Wall clock time and date at job start Tue Mar 31 2020 18:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47503 * 2 1 4 4 C 1.35428 * 117.00405 * 179.97438 * 3 2 1 5 5 N 1.32238 * 119.79628 * 359.72939 * 4 3 2 6 6 C 1.31880 * 121.79690 * 179.70912 * 5 4 3 7 7 C 1.38361 * 121.18471 * 0.56683 * 6 5 4 8 8 C 1.38329 * 119.45952 * 359.72254 * 7 6 5 9 9 C 1.50702 * 120.82704 * 180.02562 * 8 7 6 10 10 C 1.39987 * 118.35009 * 359.97438 * 8 7 6 11 11 C 1.47529 * 120.59982 * 179.97438 * 10 8 7 12 12 O 1.21593 * 119.99880 * 270.02549 * 11 10 8 13 13 N 1.34774 * 120.00202 * 90.02049 * 11 10 8 14 14 C 1.46504 * 119.99762 * 0.02562 * 13 11 10 15 15 C 1.46499 * 120.00317 * 180.02562 * 13 11 10 16 16 H 1.09002 * 110.63640 * 358.31274 * 15 13 11 17 17 C 1.55151 * 110.72196 * 234.97894 * 15 13 11 18 18 C 1.54906 * 101.57956 * 277.13498 * 17 15 13 19 19 N 1.47421 * 104.83449 * 322.99173 * 18 17 15 20 20 C 1.36940 * 125.64892 * 204.09731 * 19 18 17 21 21 H 1.07998 * 119.99716 * 180.02562 * 20 19 18 22 22 C 1.38814 * 120.00011 * 0.03198 * 20 19 18 23 23 N 1.31619 * 120.00028 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99975 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46827 * 90.00440 * 24 22 20 26 26 H 1.48497 * 109.47399 * 210.00354 * 24 22 20 27 27 H 1.48501 * 109.47266 * 330.00695 * 24 22 20 28 28 C 1.47018 * 108.70355 * 24.12464 * 19 18 17 29 29 H 1.09002 * 109.47153 * 60.00043 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00234 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47153 * 119.99957 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99586 * 2 1 3 34 34 H 1.08001 * 119.40790 * 180.28821 * 6 5 4 35 35 H 1.08001 * 120.27337 * 179.70142 * 7 6 5 36 36 H 1.09003 * 109.46790 * 269.97761 * 9 8 7 37 37 H 1.08998 * 109.46995 * 29.97329 * 9 8 7 38 38 H 1.08994 * 109.47335 * 149.97896 * 9 8 7 39 39 H 1.08996 * 109.47446 * 90.00148 * 14 13 11 40 40 H 1.09001 * 109.46556 * 209.99750 * 14 13 11 41 41 H 1.08996 * 109.47189 * 329.99428 * 14 13 11 42 42 H 1.09009 * 111.00663 * 35.20737 * 17 15 13 43 43 H 1.09000 * 111.00765 * 159.05828 * 17 15 13 44 44 H 1.09001 * 110.36667 * 204.14775 * 18 17 15 45 45 H 1.09004 * 110.46228 * 81.88073 * 18 17 15 46 46 H 0.96999 * 119.99948 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.88887 * 239.52928 * 28 19 18 48 48 H 1.09001 * 109.88143 * 118.35882 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3490 1.5246 0.0005 5 7 4.1508 0.4731 0.0065 6 6 5.4635 0.6001 0.0015 7 6 6.0626 1.8473 0.0016 8 6 5.2715 2.9820 0.0011 9 6 5.8914 4.3556 0.0005 10 6 3.8807 2.8228 0.0000 11 6 2.9901 3.9990 -0.0001 12 8 2.6227 4.4833 1.0530 13 7 2.5838 4.5366 -1.1672 14 6 3.0261 3.9527 -2.4360 15 6 1.6999 5.7049 -1.1673 16 1 1.4439 5.9930 -0.1477 17 6 0.4212 5.4258 -2.0004 18 6 0.9172 5.7179 -3.4386 19 7 1.8353 6.8626 -3.2960 20 6 2.1538 7.7578 -4.2821 21 1 2.8405 8.5657 -4.0766 22 6 1.5941 7.6269 -5.5456 23 7 0.7568 6.6427 -5.7958 24 14 2.0293 8.8477 -6.8909 25 1 3.2160 8.3589 -7.6379 26 1 0.8813 8.9879 -7.8224 27 1 2.3366 10.1668 -6.2819 28 6 2.3526 6.8834 -1.9200 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 6.0819 -0.2853 0.0019 35 1 7.1391 1.9342 0.0023 36 1 6.0404 4.6874 1.0281 37 1 6.8523 4.3204 -0.5128 38 1 5.2299 5.0526 -0.5139 39 1 2.3163 3.1878 -2.7510 40 1 3.0806 4.7327 -3.1954 41 1 4.0105 3.5032 -2.3055 42 1 0.1076 4.3868 -1.8988 43 1 -0.3841 6.1045 -1.7195 44 1 0.0786 5.9821 -4.0828 45 1 1.4469 4.8547 -3.8417 46 1 0.3660 6.5510 -6.6788 47 1 2.0864 7.8241 -1.4380 48 1 3.4359 6.7629 -1.9294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033296219.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:40 Heat of formation + Delta-G solvation = -18.914533 kcal Electronic energy + Delta-G solvation = -30234.358224 eV Core-core repulsion = 26290.228868 eV Total energy + Delta-G solvation = -3944.129357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.19450 -40.83913 -39.28836 -38.88874 -36.02429 -34.97614 -33.94195 -33.06801 -31.37226 -30.82259 -29.67089 -29.06589 -27.67256 -26.42402 -25.19256 -24.56964 -22.87406 -22.13852 -21.99212 -20.24434 -19.13446 -18.96811 -18.60808 -18.22733 -17.66043 -17.32340 -16.71818 -16.32186 -15.94969 -15.65638 -15.64059 -15.16249 -15.05059 -14.50771 -14.34065 -14.18597 -14.05239 -13.84346 -13.69248 -13.63985 -13.43842 -13.38431 -13.31709 -13.20535 -12.95628 -12.89302 -12.77517 -12.51261 -12.45363 -12.05896 -11.98690 -11.81909 -11.76186 -11.44171 -11.29308 -10.69773 -10.66228 -10.53103 -9.74994 -9.56453 -8.87272 -7.74952 -5.19331 -0.13666 0.17541 1.37907 1.49455 1.50360 1.59096 1.88615 1.92130 2.51184 2.62480 3.16941 3.35815 3.47713 3.66838 3.69825 3.83139 3.86270 3.98418 4.04256 4.08770 4.12617 4.17058 4.24625 4.38930 4.42120 4.51257 4.55955 4.62369 4.63925 4.66062 4.77366 4.80092 4.82214 4.87379 4.89559 4.98805 5.04779 5.06290 5.16639 5.21223 5.42916 5.46308 5.52838 5.63755 5.82383 6.16297 6.29067 6.31939 6.72539 6.97790 7.12586 7.78198 8.42538 9.26439 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014251 B = 0.003557 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.285267 B = 7869.543525 C = 8595.293845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.065 3.935 3 O -0.324 6.324 4 C 0.341 3.659 5 N -0.553 5.553 6 C 0.158 3.842 7 C -0.200 4.200 8 C 0.018 3.982 9 C -0.123 4.123 10 C -0.223 4.223 11 C 0.582 3.418 12 O -0.576 6.576 13 N -0.581 5.581 14 C 0.090 3.910 15 C 0.135 3.865 16 H 0.102 0.898 17 C -0.139 4.139 18 C 0.154 3.846 19 N -0.617 5.617 20 C -0.237 4.237 21 H 0.079 0.921 22 C -0.059 4.059 23 N -0.945 5.945 24 Si 0.977 3.023 25 H -0.286 1.286 26 H -0.295 1.295 27 H -0.272 1.272 28 C 0.131 3.869 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.206 0.794 35 H 0.184 0.816 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.012 0.988 46 H 0.247 0.753 47 H 0.036 0.964 48 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.790 -15.241 11.510 21.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.010 4.010 3 O -0.231 6.231 4 C 0.163 3.837 5 N -0.277 5.277 6 C 0.002 3.998 7 C -0.220 4.220 8 C 0.010 3.990 9 C -0.179 4.179 10 C -0.229 4.229 11 C 0.371 3.629 12 O -0.456 6.456 13 N -0.312 5.312 14 C -0.053 4.053 15 C 0.031 3.969 16 H 0.120 0.880 17 C -0.179 4.179 18 C 0.030 3.970 19 N -0.344 5.344 20 C -0.366 4.366 21 H 0.097 0.903 22 C -0.252 4.252 23 N -0.595 5.595 24 Si 0.806 3.194 25 H -0.213 1.213 26 H -0.222 1.222 27 H -0.198 1.198 28 C 0.005 3.995 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.126 0.874 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.222 0.778 35 H 0.201 0.799 36 H 0.109 0.891 37 H 0.130 0.870 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.030 0.970 46 H 0.057 0.943 47 H 0.054 0.946 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 8.914 -15.559 11.839 21.487 hybrid contribution 0.106 1.313 -0.922 1.608 sum 9.019 -14.247 10.916 20.087 Atomic orbital electron populations 1.21853 0.91696 1.04356 1.02824 1.22836 0.95900 0.79486 1.02759 1.86242 1.17027 1.32921 1.86955 1.19733 0.84533 0.88646 0.90797 1.67482 1.07886 1.31374 1.20993 1.23347 0.88387 0.99228 0.88858 1.22220 1.03082 0.91071 1.05611 1.20483 0.89490 0.98713 0.90319 1.20982 1.02176 0.90684 1.04042 1.19696 0.95111 0.91453 1.16617 1.18145 0.79345 0.82462 0.82992 1.90719 1.58894 1.63804 1.32190 1.47735 1.47421 1.29780 1.06221 1.21842 0.99345 0.98899 0.85193 1.21964 0.90134 0.84799 0.99968 0.88042 1.23185 0.96243 1.01315 0.97131 1.21859 0.94182 0.88362 0.92609 1.44725 1.51901 1.30771 1.06995 1.19393 1.21748 1.05414 0.90027 0.90291 1.25523 0.99838 1.00322 0.99517 1.70035 1.34873 1.33551 1.21017 0.85100 0.76681 0.78729 0.78917 1.21330 1.22171 1.19750 1.21669 0.96318 0.95691 0.85794 0.92361 0.92287 0.87450 0.91123 0.91071 0.77773 0.79898 0.89147 0.86991 0.93147 0.93040 0.90521 0.90667 0.90829 0.90506 0.91036 0.97025 0.94341 0.94642 0.95405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 10.28 71.98 0.74 -2.06 16 2 C 0.06 1.45 6.03 71.98 0.43 1.88 16 3 O -0.32 -9.96 9.57 -87.23 -0.84 -10.80 16 4 C 0.34 9.99 7.51 85.13 0.64 10.63 16 5 N -0.55 -13.06 9.21 -307.99 -2.84 -15.89 16 6 C 0.16 2.51 11.17 84.71 0.95 3.46 16 7 C -0.20 -3.06 9.79 22.32 0.22 -2.84 16 8 C 0.02 0.41 5.53 -19.42 -0.11 0.30 16 9 C -0.12 -2.46 9.69 71.24 0.69 -1.77 16 10 C -0.22 -6.71 3.94 -19.91 -0.08 -6.79 16 11 C 0.58 21.08 5.28 86.69 0.46 21.54 16 12 O -0.58 -24.38 16.47 -4.01 -0.07 -24.45 16 13 N -0.58 -20.95 2.82 -819.73 -2.31 -23.26 16 14 C 0.09 3.08 8.35 127.77 1.07 4.15 16 15 C 0.14 5.23 3.58 46.18 0.17 5.40 16 16 H 0.10 3.95 6.99 -2.39 -0.02 3.93 16 17 C -0.14 -5.55 6.53 31.98 0.21 -5.34 16 18 C 0.15 7.43 5.00 86.85 0.43 7.86 16 19 N -0.62 -31.01 2.97 -692.00 -2.05 -33.07 16 20 C -0.24 -12.95 10.27 84.03 0.86 -12.09 16 21 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 22 C -0.06 -3.26 5.49 84.86 0.47 -2.79 16 23 N -0.95 -54.67 10.09 21.65 0.22 -54.45 16 24 Si 0.98 44.73 29.55 68.60 2.03 46.76 16 25 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 26 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 C 0.13 5.58 6.24 86.73 0.54 6.13 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.07 1.47 8.10 -2.39 -0.02 1.45 16 33 H 0.07 1.50 8.11 -2.39 -0.02 1.48 16 34 H 0.21 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 36 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.11 1.50 8.10 -2.39 -0.02 1.48 16 38 H 0.05 1.29 7.19 -2.39 -0.02 1.28 16 39 H 0.05 1.76 7.99 -2.39 -0.02 1.74 16 40 H 0.08 3.09 5.19 -2.39 -0.01 3.08 16 41 H 0.07 2.24 6.55 -2.39 -0.02 2.23 16 42 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 43 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 44 H 0.07 3.97 5.87 -2.39 -0.01 3.95 16 45 H 0.01 0.59 5.55 -2.39 -0.01 0.58 16 46 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 47 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.03 1.18 8.04 -2.39 -0.02 1.16 16 Total: -1.00 -71.80 383.63 2.79 -69.01 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.96 Total: 18.47 kcal Atomic # 6 Polarization: 19.98 SS G_CDS: 7.69 Total: 27.67 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -6.99 Total: -126.67 kcal Atomic # 8 Polarization: -34.34 SS G_CDS: -0.90 Total: -35.24 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -71.80 2.79 -69.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033296219.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.096 kcal (2) G-P(sol) polarization free energy of solvation -71.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds