Wall clock time and date at job start Tue Mar 31 2020 17:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47294 * 2 1 4 4 C 1.34773 * 119.99935 * 82.95855 * 3 2 1 5 5 O 1.21560 * 119.99517 * 183.50154 * 4 3 2 6 6 C 1.47825 * 120.00043 * 3.51032 * 4 3 2 7 7 N 1.32850 * 119.78548 * 353.91998 * 6 4 3 8 8 C 1.31376 * 121.69998 * 180.02562 * 7 6 4 9 9 C 1.38771 * 121.06473 * 359.97438 * 8 7 6 10 10 C 1.50696 * 120.27642 * 179.97438 * 9 8 7 11 11 C 1.38302 * 119.44116 * 359.70691 * 9 8 7 12 12 C 1.39343 * 118.44134 * 0.55383 * 11 9 8 13 13 O 1.35650 * 120.53753 * 179.73504 * 12 11 9 14 14 C 1.42900 * 117.00173 * 359.72754 * 13 12 11 15 15 C 1.46499 * 119.99746 * 262.96662 * 3 2 1 16 16 H 1.09000 * 110.64912 * 1.68286 * 15 3 2 17 17 C 1.55163 * 110.72013 * 125.02324 * 15 3 2 18 18 C 1.54909 * 101.58167 * 153.86392 * 17 15 3 19 19 N 1.47430 * 104.83250 * 322.98900 * 18 17 15 20 20 C 1.36936 * 125.64782 * 204.16422 * 19 18 17 21 21 H 1.08003 * 120.00175 * 179.97438 * 20 19 18 22 22 C 1.38814 * 119.99873 * 359.96121 * 20 19 18 23 23 N 1.31614 * 120.00172 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99620 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47251 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47446 * 120.00011 * 24 22 20 27 27 H 1.48505 * 109.47242 * 239.99726 * 24 22 20 28 28 C 1.47023 * 108.70323 * 24.12782 * 19 18 17 29 29 H 1.08996 * 109.46723 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47148 * 299.99735 * 1 2 3 31 31 H 1.08997 * 109.47328 * 60.00094 * 1 2 3 32 32 H 1.09003 * 109.47148 * 240.00265 * 2 1 3 33 33 H 1.08997 * 109.47328 * 119.99906 * 2 1 3 34 34 H 1.08000 * 119.46892 * 179.97438 * 8 7 6 35 35 H 1.08998 * 109.47397 * 90.00429 * 10 9 8 36 36 H 1.09003 * 109.47175 * 210.00609 * 10 9 8 37 37 H 1.09002 * 109.47425 * 330.00536 * 10 9 8 38 38 H 1.08003 * 120.77421 * 180.30029 * 11 9 8 39 39 H 1.08998 * 109.46967 * 179.97438 * 14 13 12 40 40 H 1.08995 * 109.47208 * 299.99696 * 14 13 12 41 41 H 1.09003 * 109.47269 * 59.99875 * 14 13 12 42 42 H 1.08997 * 111.00220 * 271.93462 * 17 15 3 43 43 H 1.08996 * 111.00407 * 35.78710 * 17 15 3 44 44 H 1.09002 * 110.36852 * 204.15238 * 18 17 15 45 45 H 1.09003 * 110.37045 * 81.82731 * 18 17 15 46 46 H 0.97005 * 119.99776 * 180.02562 * 23 22 20 47 47 H 1.08994 * 109.88301 * 239.52525 * 28 19 18 48 48 H 1.08999 * 109.87943 * 118.35854 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1081 2.0642 1.1584 5 8 2.4525 3.2300 1.1514 6 6 1.7879 1.3957 2.4373 7 7 1.2968 0.1613 2.4319 8 6 0.9987 -0.4680 3.5460 9 6 1.1866 0.1353 4.7814 10 6 0.8380 -0.6027 6.0482 11 6 1.7017 1.4175 4.8406 12 6 2.0049 2.0666 3.6454 13 8 2.5070 3.3267 3.6536 14 6 2.6978 3.9408 4.9298 15 6 2.4090 2.0200 -1.2592 16 1 2.2480 1.3442 -2.0992 17 6 1.6357 3.3496 -1.4633 18 6 2.6114 4.1408 -2.3698 19 7 3.9553 3.7852 -1.8787 20 6 5.0855 4.5441 -2.0261 21 1 6.0266 4.1942 -1.6283 22 6 5.0216 5.7632 -2.6870 23 7 3.8749 6.1893 -3.1724 24 14 6.5633 6.7988 -2.8873 25 1 7.7131 6.1019 -2.2569 26 1 6.8389 7.0020 -4.3323 27 1 6.3634 8.1161 -2.2315 28 6 3.8808 2.4811 -1.2039 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.6010 -1.4710 3.4995 35 1 1.7077 -1.1611 6.3945 36 1 0.5367 0.1121 6.8140 37 1 0.0174 -1.2930 5.8526 38 1 1.8612 1.9057 5.7907 39 1 3.1038 4.9431 4.7936 40 1 1.7419 4.0031 5.4496 41 1 3.3939 3.3443 5.5196 42 1 0.6863 3.1756 -1.9695 43 1 1.4822 3.8620 -0.5136 44 1 2.4410 5.2124 -2.2662 45 1 2.4946 3.8361 -3.4098 46 1 3.8304 7.0410 -3.6346 47 1 4.1989 2.5819 -0.1663 48 1 4.5148 1.7600 -1.7198 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033861438.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:50 Heat of formation + Delta-G solvation = 26.388627 kcal Electronic energy + Delta-G solvation = -30181.763661 eV Core-core repulsion = 26239.598797 eV Total energy + Delta-G solvation = -3942.164864 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.18234 -39.38766 -38.38664 -36.53185 -35.30283 -33.85733 -32.12193 -31.13457 -29.99613 -28.93853 -28.33864 -27.59181 -26.52529 -24.39149 -23.78448 -23.06975 -22.40641 -20.99336 -19.96538 -19.12449 -17.71726 -17.42971 -16.93972 -16.67598 -16.07555 -15.56604 -15.28948 -14.68942 -14.52097 -14.34580 -14.14547 -14.07585 -13.96417 -13.55509 -13.15469 -13.04837 -13.00223 -12.90849 -12.63142 -12.43040 -11.93987 -11.72564 -11.66564 -11.58204 -11.48785 -11.31684 -10.87383 -10.84969 -10.73137 -10.60929 -10.30933 -9.94143 -9.80183 -9.68157 -9.52728 -9.26334 -8.87718 -8.55611 -8.44667 -7.98771 -6.60005 -5.45628 -2.85400 0.55310 1.03883 2.96065 3.03196 3.32048 3.51479 3.56203 3.59281 3.85553 4.11681 4.29670 4.46585 4.62762 4.65846 4.68516 4.87260 4.97676 5.11193 5.15096 5.19022 5.32589 5.39871 5.50421 5.55426 5.57187 5.64853 5.72445 5.77791 5.80897 5.83484 5.93305 6.01449 6.05905 6.13381 6.27480 6.56392 6.58750 6.74935 6.80684 6.83196 6.96833 7.08409 7.42314 7.58597 7.72484 7.83481 7.92147 8.07355 8.57155 8.70663 9.41885 10.03247 10.69392 11.58354 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015882 B = 0.003555 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.557302 B = 7873.409364 C = 9113.290464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.100 3.900 3 N -0.589 5.589 4 C 0.560 3.440 5 O -0.485 6.485 6 C 0.043 3.957 7 N -0.404 5.404 8 C 0.045 3.955 9 C -0.079 4.079 10 C -0.113 4.113 11 C -0.181 4.181 12 C 0.143 3.857 13 O -0.267 6.267 14 C 0.020 3.980 15 C 0.135 3.865 16 H 0.088 0.912 17 C -0.157 4.157 18 C 0.159 3.841 19 N -0.596 5.596 20 C -0.210 4.210 21 H 0.075 0.925 22 C -0.015 4.015 23 N -0.923 5.923 24 Si 0.912 3.088 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.134 3.866 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.112 0.888 34 H 0.161 0.839 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.143 0.857 39 H 0.107 0.893 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.085 0.915 44 H 0.106 0.894 45 H 0.008 0.992 46 H 0.249 0.751 47 H 0.034 0.966 48 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.504 -16.239 19.235 26.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 N -0.322 5.322 4 C 0.346 3.654 5 O -0.357 6.357 6 C -0.096 4.096 7 N -0.115 5.115 8 C -0.115 4.115 9 C -0.081 4.081 10 C -0.171 4.171 11 C -0.208 4.208 12 C 0.092 3.908 13 O -0.176 6.176 14 C -0.076 4.076 15 C 0.032 3.968 16 H 0.106 0.894 17 C -0.197 4.197 18 C 0.034 3.966 19 N -0.322 5.322 20 C -0.338 4.338 21 H 0.093 0.907 22 C -0.210 4.210 23 N -0.573 5.573 24 Si 0.744 3.256 25 H -0.207 1.207 26 H -0.220 1.220 27 H -0.219 1.219 28 C 0.007 3.993 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.129 0.871 34 H 0.179 0.821 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.161 0.839 39 H 0.125 0.875 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.104 0.896 44 H 0.123 0.877 45 H 0.026 0.974 46 H 0.060 0.940 47 H 0.051 0.949 48 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -9.269 -15.622 18.145 25.675 hybrid contribution 0.803 0.719 0.992 1.465 sum -8.467 -14.904 19.137 25.691 Atomic orbital electron populations 1.22017 0.96397 1.01103 1.01455 1.22063 0.94448 0.82356 1.03476 1.47818 1.64055 1.14095 1.06272 1.17590 0.79368 0.86133 0.82353 1.90936 1.44557 1.14677 1.85555 1.20971 1.04463 0.91462 0.92660 1.68221 1.07654 1.06218 1.29448 1.22719 1.01081 1.00692 0.87015 1.20937 0.95946 0.93980 0.97236 1.20797 1.02300 1.00157 0.93817 1.21598 1.05148 0.96447 0.97579 1.20067 0.91576 0.85636 0.93544 1.86504 1.76327 1.24003 1.30739 1.23217 1.00883 0.99244 0.84207 1.22219 0.96385 0.94706 0.83463 0.89400 1.23465 0.97756 0.95847 1.02585 1.21829 0.81688 1.01189 0.91923 1.44311 1.05910 1.17120 1.64840 1.19106 0.86799 0.98713 1.29214 0.90717 1.24749 0.97178 0.97952 1.01124 1.69824 1.22748 1.21337 1.43393 0.86013 0.82126 0.80326 0.77169 1.20674 1.21959 1.21910 1.21477 0.92474 0.88687 0.96659 0.92436 0.92657 0.93394 0.91873 0.87084 0.82135 0.90389 0.91188 0.90659 0.83903 0.87455 0.92670 0.92675 0.93119 0.89617 0.87652 0.97391 0.94039 0.94859 0.96622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.59 37.16 0.36 -1.46 16 2 C 0.10 1.33 5.71 -4.04 -0.02 1.31 16 3 N -0.59 -10.37 2.56 -165.13 -0.42 -10.79 16 4 C 0.56 10.77 6.68 -12.34 -0.08 10.69 16 5 O -0.49 -11.36 11.53 -16.55 -0.19 -11.55 16 6 C 0.04 0.67 6.53 -82.89 -0.54 0.13 16 7 N -0.40 -5.03 4.39 -9.71 -0.04 -5.07 16 8 C 0.05 0.42 10.85 -17.55 -0.19 0.23 16 9 C -0.08 -0.66 5.90 -104.40 -0.62 -1.27 16 10 C -0.11 -0.53 10.03 36.00 0.36 -0.17 16 11 C -0.18 -1.81 8.81 -39.15 -0.34 -2.15 16 12 C 0.14 2.02 6.71 -38.56 -0.26 1.76 16 13 O -0.27 -4.18 8.58 -40.51 -0.35 -4.53 16 14 C 0.02 0.20 9.83 101.05 0.99 1.19 16 15 C 0.14 2.73 3.44 -66.09 -0.23 2.50 16 16 H 0.09 1.59 7.79 -51.93 -0.40 1.19 16 17 C -0.16 -3.52 6.39 -24.58 -0.16 -3.67 16 18 C 0.16 4.28 5.89 -2.53 -0.01 4.26 16 19 N -0.60 -16.93 3.39 -170.06 -0.58 -17.51 16 20 C -0.21 -6.36 10.27 -15.06 -0.15 -6.52 16 21 H 0.07 2.21 7.83 -52.48 -0.41 1.80 16 22 C -0.02 -0.46 5.49 -17.43 -0.10 -0.56 16 23 N -0.92 -28.72 10.09 55.49 0.56 -28.16 16 24 Si 0.91 23.52 29.55 -169.99 -5.02 18.50 16 25 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 27 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 28 C 0.13 3.23 6.51 -3.06 -0.02 3.21 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.73 6.83 -51.93 -0.35 0.37 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.77 7.82 -51.93 -0.41 0.36 16 33 H 0.11 1.43 5.17 -53.21 -0.28 1.15 16 34 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 37 H 0.07 0.26 8.09 -51.93 -0.42 -0.16 16 38 H 0.14 1.03 6.46 -52.48 -0.34 0.69 16 39 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.43 7.71 -51.93 -0.40 0.03 16 41 H 0.05 0.43 7.69 -51.93 -0.40 0.03 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.09 2.10 5.69 -51.93 -0.30 1.81 16 44 H 0.11 3.19 5.87 -51.93 -0.31 2.89 16 45 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 46 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.03 0.86 6.39 -51.93 -0.33 0.53 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 374.83 15.07 5.65 5.65 Total: -1.00 -36.87 374.83 -8.69 -45.56 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -7.28 Total: -1.57 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -1.02 Total: 9.47 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: -0.48 Total: -61.54 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -0.54 Total: -16.07 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.02 Total: 18.50 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.87 -8.69 -45.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033861438.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.952 kcal (2) G-P(sol) polarization free energy of solvation -36.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds