Wall clock time and date at job start Tue Mar 31 2020 17:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46501 * 109.47294 * 2 1 4 4 C 1.34773 * 119.99935 * 82.95855 * 3 2 1 5 5 O 1.21560 * 119.99517 * 183.50154 * 4 3 2 6 6 C 1.47825 * 120.00043 * 3.51032 * 4 3 2 7 7 N 1.32850 * 119.78548 * 353.91998 * 6 4 3 8 8 C 1.31376 * 121.69998 * 180.02562 * 7 6 4 9 9 C 1.38771 * 121.06473 * 359.97438 * 8 7 6 10 10 C 1.50696 * 120.27642 * 179.97438 * 9 8 7 11 11 C 1.38302 * 119.44116 * 359.70691 * 9 8 7 12 12 C 1.39343 * 118.44134 * 0.55383 * 11 9 8 13 13 O 1.35650 * 120.53753 * 179.73504 * 12 11 9 14 14 C 1.42900 * 117.00173 * 359.72754 * 13 12 11 15 15 C 1.46499 * 119.99746 * 262.96662 * 3 2 1 16 16 H 1.09000 * 110.64912 * 1.68286 * 15 3 2 17 17 C 1.55163 * 110.72013 * 125.02324 * 15 3 2 18 18 C 1.54909 * 101.58167 * 153.86392 * 17 15 3 19 19 N 1.47430 * 104.83250 * 322.98900 * 18 17 15 20 20 C 1.36936 * 125.64782 * 204.16422 * 19 18 17 21 21 H 1.08003 * 120.00175 * 179.97438 * 20 19 18 22 22 C 1.38814 * 119.99873 * 359.96121 * 20 19 18 23 23 N 1.31614 * 120.00172 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99620 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47251 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47446 * 120.00011 * 24 22 20 27 27 H 1.48505 * 109.47242 * 239.99726 * 24 22 20 28 28 C 1.47023 * 108.70323 * 24.12782 * 19 18 17 29 29 H 1.08996 * 109.46723 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47148 * 299.99735 * 1 2 3 31 31 H 1.08997 * 109.47328 * 60.00094 * 1 2 3 32 32 H 1.09003 * 109.47148 * 240.00265 * 2 1 3 33 33 H 1.08997 * 109.47328 * 119.99906 * 2 1 3 34 34 H 1.08000 * 119.46892 * 179.97438 * 8 7 6 35 35 H 1.08998 * 109.47397 * 90.00429 * 10 9 8 36 36 H 1.09003 * 109.47175 * 210.00609 * 10 9 8 37 37 H 1.09002 * 109.47425 * 330.00536 * 10 9 8 38 38 H 1.08003 * 120.77421 * 180.30029 * 11 9 8 39 39 H 1.08998 * 109.46967 * 179.97438 * 14 13 12 40 40 H 1.08995 * 109.47208 * 299.99696 * 14 13 12 41 41 H 1.09003 * 109.47269 * 59.99875 * 14 13 12 42 42 H 1.08997 * 111.00220 * 271.93462 * 17 15 3 43 43 H 1.08996 * 111.00407 * 35.78710 * 17 15 3 44 44 H 1.09002 * 110.36852 * 204.15238 * 18 17 15 45 45 H 1.09003 * 110.37045 * 81.82731 * 18 17 15 46 46 H 0.97005 * 119.99776 * 180.02562 * 23 22 20 47 47 H 1.08994 * 109.88301 * 239.52525 * 28 19 18 48 48 H 1.08999 * 109.87943 * 118.35854 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1081 2.0642 1.1584 5 8 2.4525 3.2300 1.1514 6 6 1.7879 1.3957 2.4373 7 7 1.2968 0.1613 2.4319 8 6 0.9987 -0.4680 3.5460 9 6 1.1866 0.1353 4.7814 10 6 0.8380 -0.6027 6.0482 11 6 1.7017 1.4175 4.8406 12 6 2.0049 2.0666 3.6454 13 8 2.5070 3.3267 3.6536 14 6 2.6978 3.9408 4.9298 15 6 2.4090 2.0200 -1.2592 16 1 2.2480 1.3442 -2.0992 17 6 1.6357 3.3496 -1.4633 18 6 2.6114 4.1408 -2.3698 19 7 3.9553 3.7852 -1.8787 20 6 5.0855 4.5441 -2.0261 21 1 6.0266 4.1942 -1.6283 22 6 5.0216 5.7632 -2.6870 23 7 3.8749 6.1893 -3.1724 24 14 6.5633 6.7988 -2.8873 25 1 7.7131 6.1019 -2.2569 26 1 6.8389 7.0020 -4.3323 27 1 6.3634 8.1161 -2.2315 28 6 3.8808 2.4811 -1.2039 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.6010 -1.4710 3.4995 35 1 1.7077 -1.1611 6.3945 36 1 0.5367 0.1121 6.8140 37 1 0.0174 -1.2930 5.8526 38 1 1.8612 1.9057 5.7907 39 1 3.1038 4.9431 4.7936 40 1 1.7419 4.0031 5.4496 41 1 3.3939 3.3443 5.5196 42 1 0.6863 3.1756 -1.9695 43 1 1.4822 3.8620 -0.5136 44 1 2.4410 5.2124 -2.2662 45 1 2.4946 3.8361 -3.4098 46 1 3.8304 7.0410 -3.6346 47 1 4.1989 2.5819 -0.1663 48 1 4.5148 1.7600 -1.7198 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033861438.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:49 Heat of formation + Delta-G solvation = 2.919431 kcal Electronic energy + Delta-G solvation = -30182.781362 eV Core-core repulsion = 26239.598797 eV Total energy + Delta-G solvation = -3943.182565 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.17751 -40.75061 -39.32081 -38.35730 -36.69108 -34.86400 -34.02138 -32.01446 -31.54695 -30.68402 -29.33589 -28.71460 -27.89246 -26.39047 -24.81841 -24.03718 -23.36712 -22.42984 -22.07009 -20.49057 -18.98810 -18.62957 -18.30756 -18.10960 -17.04873 -16.99350 -16.61082 -16.53659 -15.89451 -15.69121 -15.35205 -15.10563 -14.99378 -14.84691 -14.47053 -14.35444 -14.04196 -13.86955 -13.61887 -13.54993 -13.39955 -13.12338 -13.01137 -12.96724 -12.76279 -12.70433 -12.48475 -12.38512 -12.29434 -12.09722 -11.99255 -11.88291 -11.78862 -11.45086 -10.78560 -10.69591 -10.45619 -10.12433 -9.59971 -9.30897 -8.86749 -7.76230 -5.20491 -0.34455 0.23581 1.42208 1.45823 1.55862 1.83550 1.98369 2.22584 2.49974 2.80919 3.16268 3.32302 3.55267 3.67740 3.75000 3.92293 3.94960 3.98941 4.10276 4.18692 4.21222 4.29395 4.29715 4.34757 4.60500 4.62624 4.67418 4.70962 4.73312 4.79342 4.86346 4.88664 4.92343 5.01695 5.04301 5.14039 5.19587 5.22783 5.30079 5.42315 5.46072 5.64215 5.65921 5.79032 5.89625 6.23637 6.30368 6.52680 6.78062 7.10545 7.34383 7.77762 8.43214 9.26003 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015882 B = 0.003555 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.557302 B = 7873.409364 C = 9113.290464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.096 3.904 3 N -0.588 5.588 4 C 0.552 3.448 5 O -0.545 6.545 6 C 0.000 4.000 7 N -0.408 5.408 8 C 0.049 3.951 9 C -0.059 4.059 10 C -0.112 4.112 11 C -0.179 4.179 12 C 0.124 3.876 13 O -0.314 6.314 14 C 0.012 3.988 15 C 0.151 3.849 16 H 0.118 0.882 17 C -0.142 4.142 18 C 0.165 3.835 19 N -0.617 5.617 20 C -0.237 4.237 21 H 0.073 0.927 22 C -0.070 4.070 23 N -0.949 5.949 24 Si 0.985 3.015 25 H -0.269 1.269 26 H -0.285 1.285 27 H -0.291 1.291 28 C 0.135 3.865 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.121 0.879 34 H 0.202 0.798 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.171 0.829 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.066 0.934 45 H -0.003 1.003 46 H 0.247 0.753 47 H 0.009 0.991 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.395 -19.558 21.541 30.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 N -0.320 5.320 4 C 0.340 3.660 5 O -0.422 6.422 6 C -0.135 4.135 7 N -0.119 5.119 8 C -0.113 4.113 9 C -0.062 4.062 10 C -0.169 4.169 11 C -0.205 4.205 12 C 0.073 3.927 13 O -0.225 6.225 14 C -0.082 4.082 15 C 0.047 3.953 16 H 0.136 0.864 17 C -0.181 4.181 18 C 0.039 3.961 19 N -0.343 5.343 20 C -0.366 4.366 21 H 0.091 0.909 22 C -0.262 4.262 23 N -0.599 5.599 24 Si 0.813 3.187 25 H -0.193 1.193 26 H -0.211 1.211 27 H -0.218 1.218 28 C 0.008 3.992 29 H 0.107 0.893 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.139 0.861 34 H 0.218 0.782 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.188 0.812 39 H 0.120 0.880 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.015 0.985 46 H 0.057 0.943 47 H 0.027 0.973 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -10.173 -18.991 20.457 29.709 hybrid contribution 1.024 1.638 0.455 1.985 sum -9.148 -17.353 20.912 28.673 Atomic orbital electron populations 1.21933 0.95058 1.02723 1.00286 1.22365 0.95465 0.79922 1.04784 1.47911 1.63720 1.15498 1.04896 1.18257 0.78083 0.85693 0.83921 1.90888 1.47331 1.17309 1.86668 1.20422 1.08564 0.93253 0.91278 1.68078 1.07720 1.04958 1.31188 1.23483 0.99536 1.01835 0.86478 1.21453 0.92889 0.93083 0.98730 1.20933 1.03607 1.00499 0.91835 1.21940 1.04418 0.97072 0.97065 1.20329 0.92277 0.85455 0.94635 1.86436 1.76984 1.25317 1.33766 1.23452 1.02675 0.99125 0.82937 1.21975 0.93008 0.94351 0.85978 0.86424 1.23207 0.98082 0.96364 1.00428 1.21572 0.82631 0.99586 0.92278 1.44600 1.05908 1.18672 1.65159 1.19449 0.87622 0.99767 1.29746 0.90890 1.25688 1.00670 0.99010 1.00855 1.70089 1.24754 1.21454 1.43641 0.84912 0.78476 0.78086 0.77244 1.19333 1.21137 1.21828 1.21563 0.95616 0.87273 0.94715 0.89279 0.94015 0.94362 0.90222 0.86135 0.78151 0.88829 0.90016 0.88619 0.81159 0.87951 0.90426 0.90529 0.90272 0.92168 0.91582 0.98473 0.94332 0.97302 0.95718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.59 71.98 0.69 -2.40 16 2 C 0.10 2.40 5.71 86.38 0.49 2.89 16 3 N -0.59 -20.95 2.56 -794.63 -2.03 -22.98 16 4 C 0.55 22.32 6.68 86.78 0.58 22.90 16 5 O -0.55 -27.66 11.53 17.00 0.20 -27.46 16 6 C 0.00 0.01 6.53 41.93 0.27 0.28 16 7 N -0.41 -9.44 4.39 -184.64 -0.81 -10.25 16 8 C 0.05 0.72 10.85 84.89 0.92 1.64 16 9 C -0.06 -0.75 5.90 -19.72 -0.12 -0.87 16 10 C -0.11 -0.44 10.03 71.23 0.71 0.27 16 11 C -0.18 -3.16 8.81 22.55 0.20 -2.96 16 12 C 0.12 3.54 6.71 22.93 0.15 3.70 16 13 O -0.31 -10.47 8.58 -68.74 -0.59 -11.06 16 14 C 0.01 0.25 9.83 113.37 1.11 1.36 16 15 C 0.15 6.18 3.44 46.18 0.16 6.34 16 16 H 0.12 4.11 7.79 -2.39 -0.02 4.09 16 17 C -0.14 -6.59 6.39 31.99 0.20 -6.39 16 18 C 0.16 9.35 5.89 86.85 0.51 9.86 16 19 N -0.62 -36.84 3.39 -691.96 -2.35 -39.19 16 20 C -0.24 -15.00 10.27 84.03 0.86 -14.13 16 21 H 0.07 4.50 7.83 -2.91 -0.02 4.47 16 22 C -0.07 -4.38 5.49 84.86 0.47 -3.91 16 23 N -0.95 -61.56 10.09 21.65 0.22 -61.34 16 24 Si 0.99 49.75 29.55 68.60 2.03 51.78 16 25 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 26 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 27 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 28 C 0.13 6.77 6.51 86.73 0.56 7.34 16 29 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.04 1.03 6.83 -2.39 -0.02 1.01 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 1.73 7.82 -2.39 -0.02 1.71 16 33 H 0.12 2.86 5.17 -4.91 -0.03 2.83 16 34 H 0.20 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.08 0.22 8.09 -2.39 -0.02 0.20 16 37 H 0.10 0.08 8.09 -2.39 -0.02 0.06 16 38 H 0.17 1.91 6.46 -2.91 -0.02 1.89 16 39 H 0.10 2.05 8.14 -2.39 -0.02 2.04 16 40 H 0.08 1.14 7.71 -2.39 -0.02 1.12 16 41 H 0.08 1.14 7.69 -2.39 -0.02 1.12 16 42 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 43 H 0.06 3.15 5.69 -2.39 -0.01 3.14 16 44 H 0.07 4.27 5.87 -2.39 -0.01 4.26 16 45 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 46 H 0.25 15.34 8.31 -92.70 -0.77 14.57 16 47 H 0.01 0.49 6.39 -2.39 -0.02 0.48 16 48 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -88.52 374.83 5.40 -83.12 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.95 Total: 11.47 kcal Atomic # 6 Polarization: 18.13 SS G_CDS: 7.79 Total: 25.92 kcal Atomic # 7 Polarization: -128.79 SS G_CDS: -4.97 Total: -133.77 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -0.39 Total: -38.52 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 2.03 Total: 51.78 kcal Total: -88.52 5.40 -83.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033861438.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.037 kcal (2) G-P(sol) polarization free energy of solvation -88.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds