Wall clock time and date at job start Tue Mar 31 2020 18:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42896 * 109.47236 * 2 1 4 4 C 1.35499 * 117.00054 * 180.02562 * 3 2 1 5 5 C 1.39166 * 119.52360 * 179.97438 * 4 3 2 6 6 C 1.37961 * 119.26356 * 179.73942 * 5 4 3 7 7 C 1.40280 * 118.35385 * 0.54756 * 6 5 4 8 8 C 1.47612 * 120.49819 * 179.73355 * 7 6 5 9 9 O 1.21587 * 119.99891 * 341.32913 * 8 7 6 10 10 N 1.34777 * 120.00288 * 161.33185 * 8 7 6 11 11 C 1.47416 * 125.64942 * 185.01935 * 10 8 7 12 12 C 1.55394 * 104.87468 * 204.16839 * 11 10 8 13 13 C 1.55153 * 101.36342 * 323.02096 * 12 11 10 14 14 C 1.47018 * 125.64644 * 5.06463 * 10 8 7 15 15 H 1.09006 * 109.88636 * 59.48619 * 14 10 8 16 16 C 1.53000 * 109.88418 * 298.32055 * 14 10 8 17 17 N 1.46501 * 109.47424 * 181.79786 * 16 14 10 18 18 C 1.46497 * 120.00157 * 269.36222 * 17 16 14 19 19 C 1.36936 * 119.99441 * 89.35503 * 17 16 14 20 20 H 1.08003 * 120.00568 * 4.33993 * 19 17 16 21 21 C 1.38821 * 119.99845 * 184.33401 * 19 17 16 22 22 N 1.31622 * 119.99792 * 7.23711 * 21 19 17 23 23 Si 1.86800 * 120.00131 * 187.23508 * 21 19 17 24 24 H 1.48497 * 109.46888 * 60.00107 * 23 21 19 25 25 H 1.48496 * 109.47144 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47219 * 300.00359 * 23 21 19 27 27 C 1.39529 * 119.00245 * 359.44951 * 7 6 5 28 28 N 1.31659 * 120.62865 * 0.28480 * 27 7 6 29 29 H 1.09004 * 109.47045 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47420 * 299.99685 * 1 2 3 31 31 H 1.09002 * 109.47526 * 60.00260 * 1 2 3 32 32 H 1.09006 * 109.46691 * 240.00257 * 2 1 3 33 33 H 1.09003 * 109.47116 * 120.00397 * 2 1 3 34 34 H 1.08004 * 120.36993 * 0.02782 * 5 4 3 35 35 H 1.08001 * 120.82443 * 180.27316 * 6 5 4 36 36 H 1.09000 * 110.37098 * 323.00369 * 11 10 8 37 37 H 1.09000 * 110.36703 * 85.21604 * 11 10 8 38 38 H 1.09003 * 111.18819 * 204.98134 * 12 11 10 39 39 H 1.09002 * 111.01613 * 80.98571 * 12 11 10 40 40 H 1.09005 * 110.71471 * 277.03563 * 13 12 11 41 41 H 1.09002 * 110.71769 * 153.95105 * 13 12 11 42 42 H 1.08996 * 109.47201 * 301.80419 * 16 14 10 43 43 H 1.09004 * 109.47141 * 61.80137 * 16 14 10 44 44 H 1.08997 * 109.47008 * 354.67713 * 18 17 16 45 45 H 1.09002 * 109.47470 * 114.68719 * 18 17 16 46 46 H 1.09006 * 109.46647 * 234.68114 * 18 17 16 47 47 H 0.96997 * 119.99970 * 179.97438 * 22 21 19 48 48 H 1.08005 * 119.68719 * 180.25201 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3496 1.5247 -0.0005 5 6 3.8709 2.8151 -0.0011 6 6 5.2394 2.9897 0.0038 7 6 6.0564 1.8494 -0.0026 8 6 7.5267 1.9813 -0.0036 9 8 8.0427 3.0308 -0.3363 10 7 8.2971 0.9384 0.3642 11 6 9.7639 0.9628 0.5091 12 6 10.2079 -0.5146 0.3220 13 6 9.0498 -1.2729 1.0228 14 6 7.8139 -0.4123 0.6863 15 1 7.2914 -0.8338 -0.1725 16 6 6.8755 -0.3551 1.8933 17 7 6.4334 -1.7099 2.2330 18 6 5.2114 -2.2532 1.6350 19 6 7.1627 -2.4684 3.1093 20 1 8.0241 -2.0440 3.6037 21 6 6.7948 -3.7828 3.3623 22 7 5.8357 -4.3450 2.6577 23 14 7.6609 -4.7537 4.7027 24 1 7.4734 -4.0710 6.0081 25 1 7.0868 -6.1213 4.7729 26 1 9.1107 -4.8401 4.3932 27 6 5.4585 0.5887 -0.0018 28 7 4.1475 0.4681 -0.0009 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 3.2114 3.6704 -0.0007 35 1 5.6710 3.9797 0.0079 36 1 10.2108 1.5929 -0.2599 37 1 10.0413 1.3210 1.5004 38 1 11.1584 -0.7064 0.8199 39 1 10.2626 -0.7755 -0.7349 40 1 9.2109 -1.3121 2.1002 41 1 8.9433 -2.2775 0.6135 42 1 7.4024 0.0790 2.7430 43 1 6.0086 0.2598 1.6508 44 1 4.7210 -1.4795 1.0442 45 1 5.4651 -3.0957 0.9916 46 1 4.5387 -2.5886 2.4244 47 1 5.5789 -5.2635 2.8342 48 1 6.0771 -0.2967 -0.0026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281940509.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:26 Heat of formation + Delta-G solvation = 38.489676 kcal Electronic energy + Delta-G solvation = -30452.523689 eV Core-core repulsion = 26510.883566 eV Total energy + Delta-G solvation = -3941.640123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.14830 -39.74286 -37.83685 -37.51694 -35.31766 -32.77095 -32.39831 -31.63367 -31.41634 -29.80006 -28.78990 -26.09344 -25.57233 -24.49692 -24.06377 -22.60622 -22.16458 -21.16279 -20.46124 -19.26016 -18.46148 -17.65784 -16.92614 -16.53084 -16.27593 -15.82930 -15.20236 -15.01506 -14.73986 -14.40168 -14.07218 -13.86035 -13.60509 -13.48932 -13.19684 -13.14356 -12.89411 -12.70058 -12.55384 -12.42626 -12.27570 -11.83198 -11.72917 -11.56066 -11.17473 -10.94172 -10.85743 -10.84625 -10.71997 -10.45749 -10.41570 -10.12912 -10.01834 -9.94415 -9.73957 -9.64452 -9.35258 -8.66864 -8.49164 -8.25672 -6.96593 -5.67565 -3.13073 0.86324 1.29166 2.97297 2.99668 3.16908 3.34858 3.41357 3.41788 3.92422 4.30725 4.41671 4.59764 4.87767 4.95477 4.96162 4.99901 5.01540 5.07083 5.16403 5.23126 5.36354 5.40229 5.48829 5.55006 5.62023 5.67364 5.74370 5.75698 5.82071 5.85497 5.92414 5.99341 6.07602 6.10258 6.16981 6.28908 6.41331 6.46597 6.51020 6.69414 6.78624 6.90733 7.24596 7.61289 7.67515 7.72650 7.87910 7.92327 8.31084 8.33419 9.21038 9.82587 10.25054 11.29810 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008701 B = 0.005347 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3217.324205 B = 5234.881749 C = 8065.470022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.306 6.306 4 C 0.346 3.654 5 C -0.214 4.214 6 C 0.017 3.983 7 C -0.242 4.242 8 C 0.586 3.414 9 O -0.553 6.553 10 N -0.607 5.607 11 C 0.109 3.891 12 C -0.139 4.139 13 C -0.102 4.102 14 C 0.089 3.911 15 H 0.077 0.923 16 C 0.128 3.872 17 N -0.600 5.600 18 C 0.154 3.846 19 C -0.247 4.247 20 H 0.073 0.927 21 C 0.000 4.000 22 N -0.913 5.913 23 Si 0.905 3.095 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.174 3.826 28 N -0.539 5.539 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.053 0.947 43 H 0.056 0.944 44 H 0.018 0.982 45 H 0.045 0.955 46 H 0.035 0.965 47 H 0.250 0.750 48 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.446 9.455 -6.599 11.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.213 6.213 4 C 0.167 3.833 5 C -0.235 4.235 6 C -0.008 4.008 7 C -0.248 4.248 8 C 0.376 3.624 9 O -0.432 6.432 10 N -0.340 5.340 11 C -0.014 4.014 12 C -0.177 4.177 13 C -0.140 4.140 14 C -0.016 4.016 15 H 0.094 0.906 16 C -0.001 4.001 17 N -0.323 5.323 18 C 0.010 3.990 19 C -0.376 4.376 20 H 0.091 0.909 21 C -0.197 4.197 22 N -0.560 5.560 23 Si 0.735 3.265 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.211 1.211 27 C 0.018 3.982 28 N -0.263 5.263 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.161 0.839 35 H 0.166 0.834 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.036 0.964 45 H 0.063 0.937 46 H 0.053 0.947 47 H 0.061 0.939 48 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -2.960 9.219 -6.759 11.809 hybrid contribution 0.809 -0.171 0.837 1.177 sum -2.151 9.048 -5.922 11.025 Atomic orbital electron populations 1.21815 0.93149 1.02978 1.02947 1.22698 0.94548 0.80626 1.03400 1.86163 1.16950 1.31308 1.86890 1.20159 0.84203 0.90154 0.88774 1.20906 0.95383 0.95728 1.11479 1.21377 0.91553 0.98887 0.89011 1.20673 0.94312 0.95333 1.14459 1.17513 0.85686 0.82498 0.76690 1.90734 1.74918 1.28010 1.49582 1.48561 1.07742 1.11079 1.66613 1.22276 0.79977 0.97649 1.01469 1.22958 0.99355 0.94091 1.01326 1.22500 0.90893 0.98349 1.02255 1.23163 0.97882 0.80941 0.99631 0.90560 1.21705 0.95289 0.88802 0.94328 1.44019 1.26213 1.10875 1.51148 1.21243 0.86395 0.94781 0.96582 1.19208 1.08688 0.93045 1.16666 0.90880 1.24826 0.98670 0.96889 0.99343 1.70215 1.31830 1.13018 1.40895 0.86326 0.78865 0.79307 0.81976 1.21292 1.21682 1.21070 1.24295 0.89959 0.98334 0.85609 1.67575 1.06082 1.32087 1.20564 0.90167 0.91756 0.91935 0.91289 0.90774 0.83861 0.83394 0.90762 0.91478 0.90067 0.91131 0.89453 0.89694 0.92906 0.92636 0.96387 0.93669 0.94659 0.93902 0.78740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 37.16 0.38 -1.04 16 2 C 0.06 0.78 6.02 37.16 0.22 1.00 16 3 O -0.31 -4.29 10.10 -18.19 -0.18 -4.47 16 4 C 0.35 5.21 7.49 -16.96 -0.13 5.08 16 5 C -0.21 -2.83 10.02 -39.34 -0.39 -3.22 16 6 C 0.02 0.24 9.70 -38.92 -0.38 -0.14 16 7 C -0.24 -3.85 5.29 -104.82 -0.55 -4.41 16 8 C 0.59 9.97 7.61 -12.43 -0.09 9.87 16 9 O -0.55 -10.46 16.80 5.29 0.09 -10.37 16 10 N -0.61 -9.63 3.06 -163.91 -0.50 -10.13 16 11 C 0.11 1.49 6.95 -2.27 -0.02 1.47 16 12 C -0.14 -1.75 7.12 -24.32 -0.17 -1.92 16 13 C -0.10 -1.62 5.45 -24.90 -0.14 -1.76 16 14 C 0.09 1.48 2.44 -66.96 -0.16 1.32 16 15 H 0.08 1.30 5.99 -51.93 -0.31 0.99 16 16 C 0.13 2.44 4.38 -4.04 -0.02 2.43 16 17 N -0.60 -13.66 2.82 -181.12 -0.51 -14.17 16 18 C 0.15 3.59 8.73 59.85 0.52 4.11 16 19 C -0.25 -6.15 8.35 -15.06 -0.13 -6.28 16 20 H 0.07 1.76 6.95 -52.48 -0.36 1.40 16 21 C 0.00 -0.01 5.40 -17.43 -0.09 -0.11 16 22 N -0.91 -25.00 9.55 55.49 0.53 -24.47 16 23 Si 0.90 20.89 29.56 -169.99 -5.02 15.87 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 C 0.17 2.86 6.26 -17.14 -0.11 2.75 16 28 N -0.54 -8.90 7.87 -14.44 -0.11 -9.01 16 29 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 33 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 34 H 0.14 1.51 8.06 -52.48 -0.42 1.08 16 35 H 0.15 1.82 7.84 -52.49 -0.41 1.41 16 36 H 0.07 0.99 7.99 -51.93 -0.41 0.58 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 1.52 6.30 -51.93 -0.33 1.19 16 41 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 42 H 0.05 1.04 8.04 -51.93 -0.42 0.63 16 43 H 0.06 1.06 3.71 -55.26 -0.21 0.86 16 44 H 0.02 0.37 4.78 -51.93 -0.25 0.12 16 45 H 0.04 1.15 6.91 -51.93 -0.36 0.79 16 46 H 0.03 0.92 7.21 -51.93 -0.37 0.54 16 47 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 48 H 0.20 3.37 2.15 -52.48 -0.11 3.26 16 LS Contribution 370.03 15.07 5.58 5.58 Total: -1.00 -29.24 370.03 -8.30 -37.54 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.90 Total: 4.48 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: -1.25 Total: 9.17 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.60 Total: -57.79 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.09 Total: -14.84 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.24 -8.30 -37.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281940509.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.028 kcal (2) G-P(sol) polarization free energy of solvation -29.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds