Wall clock time and date at job start Tue Mar 31 2020 18:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42896 * 109.47236 * 2 1 4 4 C 1.35499 * 117.00054 * 180.02562 * 3 2 1 5 5 C 1.39166 * 119.52360 * 179.97438 * 4 3 2 6 6 C 1.37961 * 119.26356 * 179.73942 * 5 4 3 7 7 C 1.40280 * 118.35385 * 0.54756 * 6 5 4 8 8 C 1.47612 * 120.49819 * 179.73355 * 7 6 5 9 9 O 1.21587 * 119.99891 * 341.32913 * 8 7 6 10 10 N 1.34777 * 120.00288 * 161.33185 * 8 7 6 11 11 C 1.47416 * 125.64942 * 185.01935 * 10 8 7 12 12 C 1.55394 * 104.87468 * 204.16839 * 11 10 8 13 13 C 1.55153 * 101.36342 * 323.02096 * 12 11 10 14 14 C 1.47018 * 125.64644 * 5.06463 * 10 8 7 15 15 H 1.09006 * 109.88636 * 59.48619 * 14 10 8 16 16 C 1.53000 * 109.88418 * 298.32055 * 14 10 8 17 17 N 1.46501 * 109.47424 * 181.79786 * 16 14 10 18 18 C 1.46497 * 120.00157 * 269.36222 * 17 16 14 19 19 C 1.36936 * 119.99441 * 89.35503 * 17 16 14 20 20 H 1.08003 * 120.00568 * 4.33993 * 19 17 16 21 21 C 1.38821 * 119.99845 * 184.33401 * 19 17 16 22 22 N 1.31622 * 119.99792 * 7.23711 * 21 19 17 23 23 Si 1.86800 * 120.00131 * 187.23508 * 21 19 17 24 24 H 1.48497 * 109.46888 * 60.00107 * 23 21 19 25 25 H 1.48496 * 109.47144 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47219 * 300.00359 * 23 21 19 27 27 C 1.39529 * 119.00245 * 359.44951 * 7 6 5 28 28 N 1.31659 * 120.62865 * 0.28480 * 27 7 6 29 29 H 1.09004 * 109.47045 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47420 * 299.99685 * 1 2 3 31 31 H 1.09002 * 109.47526 * 60.00260 * 1 2 3 32 32 H 1.09006 * 109.46691 * 240.00257 * 2 1 3 33 33 H 1.09003 * 109.47116 * 120.00397 * 2 1 3 34 34 H 1.08004 * 120.36993 * 0.02782 * 5 4 3 35 35 H 1.08001 * 120.82443 * 180.27316 * 6 5 4 36 36 H 1.09000 * 110.37098 * 323.00369 * 11 10 8 37 37 H 1.09000 * 110.36703 * 85.21604 * 11 10 8 38 38 H 1.09003 * 111.18819 * 204.98134 * 12 11 10 39 39 H 1.09002 * 111.01613 * 80.98571 * 12 11 10 40 40 H 1.09005 * 110.71471 * 277.03563 * 13 12 11 41 41 H 1.09002 * 110.71769 * 153.95105 * 13 12 11 42 42 H 1.08996 * 109.47201 * 301.80419 * 16 14 10 43 43 H 1.09004 * 109.47141 * 61.80137 * 16 14 10 44 44 H 1.08997 * 109.47008 * 354.67713 * 18 17 16 45 45 H 1.09002 * 109.47470 * 114.68719 * 18 17 16 46 46 H 1.09006 * 109.46647 * 234.68114 * 18 17 16 47 47 H 0.96997 * 119.99970 * 179.97438 * 22 21 19 48 48 H 1.08005 * 119.68719 * 180.25201 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3496 1.5247 -0.0005 5 6 3.8709 2.8151 -0.0011 6 6 5.2394 2.9897 0.0038 7 6 6.0564 1.8494 -0.0026 8 6 7.5267 1.9813 -0.0036 9 8 8.0427 3.0308 -0.3363 10 7 8.2971 0.9384 0.3642 11 6 9.7639 0.9628 0.5091 12 6 10.2079 -0.5146 0.3220 13 6 9.0498 -1.2729 1.0228 14 6 7.8139 -0.4123 0.6863 15 1 7.2914 -0.8338 -0.1725 16 6 6.8755 -0.3551 1.8933 17 7 6.4334 -1.7099 2.2330 18 6 5.2114 -2.2532 1.6350 19 6 7.1627 -2.4684 3.1093 20 1 8.0241 -2.0440 3.6037 21 6 6.7948 -3.7828 3.3623 22 7 5.8357 -4.3450 2.6577 23 14 7.6609 -4.7537 4.7027 24 1 7.4734 -4.0710 6.0081 25 1 7.0868 -6.1213 4.7729 26 1 9.1107 -4.8401 4.3932 27 6 5.4585 0.5887 -0.0018 28 7 4.1475 0.4681 -0.0009 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 3.2114 3.6704 -0.0007 35 1 5.6710 3.9797 0.0079 36 1 10.2108 1.5929 -0.2599 37 1 10.0413 1.3210 1.5004 38 1 11.1584 -0.7064 0.8199 39 1 10.2626 -0.7755 -0.7349 40 1 9.2109 -1.3121 2.1002 41 1 8.9433 -2.2775 0.6135 42 1 7.4024 0.0790 2.7430 43 1 6.0086 0.2598 1.6508 44 1 4.7210 -1.4795 1.0442 45 1 5.4651 -3.0957 0.9916 46 1 4.5387 -2.5886 2.4244 47 1 5.5789 -5.2635 2.8342 48 1 6.0771 -0.2967 -0.0026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281940509.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:25 Heat of formation + Delta-G solvation = 20.771191 kcal Electronic energy + Delta-G solvation = -30453.292021 eV Core-core repulsion = 26510.883566 eV Total energy + Delta-G solvation = -3942.408455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.40260 -40.96167 -39.03219 -38.89340 -37.01170 -34.07895 -33.59932 -33.14913 -32.57046 -31.14578 -30.16679 -28.00720 -27.02004 -25.68345 -25.39454 -23.77379 -23.44132 -22.57315 -21.84899 -20.58270 -19.59956 -19.04257 -18.63176 -17.78055 -17.36884 -17.22759 -16.75377 -16.33747 -16.23890 -15.63835 -15.36300 -15.23404 -14.97646 -14.70174 -14.66795 -14.46749 -14.26158 -13.92634 -13.73560 -13.64250 -13.40442 -13.27030 -13.13345 -12.78600 -12.63171 -12.53601 -12.49052 -12.25255 -12.02561 -11.98950 -11.85794 -11.76210 -11.47770 -11.43694 -11.21763 -10.96506 -10.61250 -10.58671 -9.85749 -9.51132 -8.85162 -7.66444 -5.12789 -0.35775 0.14231 1.50645 1.52563 1.57965 1.68326 1.86504 1.96744 2.55161 2.70541 3.09572 3.28313 3.41013 3.64434 3.71041 3.77551 3.83718 3.93943 3.99485 4.05452 4.09153 4.20659 4.24342 4.36092 4.40955 4.48945 4.58141 4.64421 4.71459 4.86406 4.87697 4.88641 4.95786 4.96441 5.05162 5.05983 5.09357 5.20020 5.24043 5.29812 5.34946 5.47763 5.60876 5.70250 5.92295 6.11565 6.32846 6.41141 6.67420 7.00509 7.22364 7.92129 8.31277 9.29866 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008701 B = 0.005347 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3217.324205 B = 5234.881749 C = 8065.470022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.059 3.941 3 O -0.306 6.306 4 C 0.333 3.667 5 C -0.198 4.198 6 C 0.020 3.980 7 C -0.252 4.252 8 C 0.585 3.415 9 O -0.572 6.572 10 N -0.606 5.606 11 C 0.104 3.896 12 C -0.122 4.122 13 C -0.102 4.102 14 C 0.103 3.897 15 H 0.074 0.926 16 C 0.133 3.867 17 N -0.610 5.610 18 C 0.178 3.822 19 C -0.240 4.240 20 H 0.081 0.919 21 C -0.056 4.056 22 N -0.942 5.942 23 Si 0.962 3.038 24 H -0.286 1.286 25 H -0.301 1.301 26 H -0.273 1.273 27 C 0.163 3.837 28 N -0.559 5.559 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.176 0.824 35 H 0.168 0.832 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.047 0.953 43 H 0.060 0.940 44 H 0.041 0.959 45 H 0.019 0.981 46 H 0.000 1.000 47 H 0.242 0.758 48 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.856 11.194 -6.852 13.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.016 4.016 3 O -0.212 6.212 4 C 0.154 3.846 5 C -0.219 4.219 6 C -0.005 4.005 7 C -0.257 4.257 8 C 0.376 3.624 9 O -0.454 6.454 10 N -0.338 5.338 11 C -0.018 4.018 12 C -0.160 4.160 13 C -0.140 4.140 14 C -0.003 4.003 15 H 0.091 0.909 16 C 0.005 3.995 17 N -0.333 5.333 18 C 0.033 3.967 19 C -0.369 4.369 20 H 0.099 0.901 21 C -0.249 4.249 22 N -0.591 5.591 23 Si 0.792 3.208 24 H -0.213 1.213 25 H -0.228 1.228 26 H -0.199 1.199 27 C 0.008 3.992 28 N -0.283 5.283 29 H 0.113 0.887 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.194 0.806 35 H 0.185 0.815 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.124 0.876 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.060 0.940 45 H 0.038 0.962 46 H 0.019 0.981 47 H 0.051 0.949 48 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -2.337 10.991 -7.015 13.246 hybrid contribution 0.569 -0.600 0.885 1.211 sum -1.768 10.390 -6.130 12.193 Atomic orbital electron populations 1.21813 0.90503 1.04171 1.03637 1.22814 0.96608 0.79942 1.02197 1.86180 1.16361 1.31974 1.86711 1.20496 0.84526 0.90645 0.88940 1.21240 0.95505 0.95917 1.09197 1.21637 0.91671 0.99077 0.88114 1.20716 0.94051 0.95812 1.15151 1.17663 0.86109 0.82304 0.76336 1.90719 1.75351 1.28637 1.50695 1.48567 1.08803 1.10373 1.66042 1.22475 0.78507 0.98570 1.02215 1.22918 0.98908 0.92314 1.01823 1.22398 0.92131 0.97848 1.01612 1.22776 0.97678 0.81677 0.98162 0.90899 1.21737 0.95965 0.86762 0.95044 1.44112 1.26019 1.11978 1.51216 1.20840 0.86214 0.94586 0.95021 1.19516 1.08327 0.93010 1.16098 0.90076 1.25499 0.99837 0.98099 1.01478 1.70412 1.33561 1.12715 1.42460 0.85407 0.78388 0.77401 0.79647 1.21273 1.22781 1.19855 1.24050 0.89998 0.98258 0.86932 1.67481 1.06241 1.33377 1.21213 0.88749 0.91419 0.90819 0.91741 0.92773 0.80621 0.81459 0.89987 0.90722 0.87567 0.90083 0.90876 0.91206 0.93461 0.92279 0.94034 0.96229 0.98089 0.94854 0.80040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 10.28 71.98 0.74 -1.77 16 2 C 0.06 1.47 6.02 71.98 0.43 1.90 16 3 O -0.31 -8.21 10.10 -88.01 -0.89 -9.10 16 4 C 0.33 9.65 7.49 84.83 0.64 10.28 16 5 C -0.20 -4.75 10.02 22.43 0.22 -4.53 16 6 C 0.02 0.52 9.70 22.70 0.22 0.74 16 7 C -0.25 -7.74 5.29 -19.99 -0.11 -7.85 16 8 C 0.59 19.17 7.61 86.72 0.66 19.83 16 9 O -0.57 -20.74 16.80 -3.99 -0.07 -20.80 16 10 N -0.61 -18.47 3.06 -790.74 -2.42 -20.89 16 11 C 0.10 2.62 6.95 87.03 0.60 3.22 16 12 C -0.12 -2.76 7.12 32.16 0.23 -2.53 16 13 C -0.10 -3.15 5.45 31.78 0.17 -2.98 16 14 C 0.10 3.37 2.44 45.34 0.11 3.48 16 15 H 0.07 2.51 5.99 -2.38 -0.01 2.50 16 16 C 0.13 5.07 4.38 86.38 0.38 5.45 16 17 N -0.61 -28.29 2.82 -726.93 -2.05 -30.34 16 18 C 0.18 8.61 8.73 127.77 1.12 9.72 16 19 C -0.24 -12.05 8.35 84.04 0.70 -11.34 16 20 H 0.08 3.88 6.95 -2.91 -0.02 3.86 16 21 C -0.06 -2.96 5.40 84.86 0.46 -2.50 16 22 N -0.94 -53.36 9.55 21.65 0.21 -53.15 16 23 Si 0.96 43.38 29.56 68.60 2.03 45.40 16 24 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 26 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 27 C 0.16 5.36 6.26 85.03 0.53 5.89 16 28 N -0.56 -18.40 7.87 -312.50 -2.46 -20.86 16 29 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.63 8.10 -2.38 -0.02 1.61 16 33 H 0.05 1.54 8.10 -2.39 -0.02 1.52 16 34 H 0.18 3.03 8.06 -2.91 -0.02 3.01 16 35 H 0.17 3.64 7.84 -2.91 -0.02 3.62 16 36 H 0.08 1.99 7.99 -2.39 -0.02 1.97 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.07 2.48 6.30 -2.38 -0.02 2.46 16 41 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.05 1.85 8.04 -2.39 -0.02 1.83 16 43 H 0.06 2.26 3.71 -5.52 -0.02 2.24 16 44 H 0.04 1.78 4.78 -2.39 -0.01 1.77 16 45 H 0.02 1.03 6.91 -2.39 -0.02 1.02 16 46 H 0.00 0.02 7.21 -2.38 -0.02 0.01 16 47 H 0.24 13.57 8.31 -92.71 -0.77 12.80 16 48 H 0.18 6.38 2.15 -2.91 -0.01 6.37 16 Total: -1.00 -63.54 370.03 2.43 -61.11 By element: Atomic # 1 Polarization: 20.64 SS G_CDS: 0.97 Total: 21.61 kcal Atomic # 6 Polarization: 19.90 SS G_CDS: 7.11 Total: 27.02 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -6.73 Total: -125.24 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.96 Total: -29.90 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -63.54 2.43 -61.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281940509.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.882 kcal (2) G-P(sol) polarization free energy of solvation -63.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds