Wall clock time and date at job start Tue Mar 31 2020 17:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.34779 * 119.99872 * 180.02562 * 3 2 1 5 5 O 1.21273 * 120.00093 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99944 * 180.02562 * 4 3 2 7 7 C 1.50701 * 109.47064 * 180.02562 * 6 4 3 8 8 O 1.21280 * 119.99781 * 359.97438 * 7 6 4 9 9 N 1.34771 * 119.99622 * 180.02562 * 7 6 4 10 10 C 1.46505 * 119.99622 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.47064 * 179.97438 * 10 9 7 12 12 C 1.38234 * 119.99770 * 269.72527 * 11 10 9 13 13 C 1.38239 * 119.99901 * 179.76875 * 12 11 10 14 14 C 1.38238 * 119.99492 * 0.48004 * 13 12 11 15 15 C 1.50706 * 119.99437 * 179.77082 * 14 13 12 16 16 C 1.53005 * 109.47127 * 270.02394 * 15 14 13 17 17 N 1.46495 * 109.46744 * 180.02562 * 16 15 14 18 18 C 1.36948 * 119.99382 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00308 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99528 * 179.97438 * 18 17 16 21 21 N 1.31620 * 120.00245 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99737 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47096 * 60.00203 * 22 20 18 24 24 H 1.48506 * 109.47221 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47110 * 299.99734 * 22 20 18 26 26 C 1.38225 * 120.00505 * 359.79428 * 14 13 12 27 27 C 1.38232 * 119.99860 * 89.99969 * 11 10 9 28 28 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46741 * 240.00224 * 2 1 3 32 32 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 33 33 H 0.97000 * 120.00420 * 0.02562 * 3 2 1 34 34 H 1.09001 * 109.46980 * 60.00059 * 6 4 3 35 35 H 1.09002 * 109.47152 * 300.00160 * 6 4 3 36 36 H 0.96996 * 120.00772 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 38 38 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 39 39 H 1.08001 * 120.00330 * 359.97438 * 12 11 10 40 40 H 1.07993 * 120.00120 * 180.25541 * 13 12 11 41 41 H 1.09002 * 109.47512 * 30.02407 * 15 14 13 42 42 H 1.09001 * 109.46797 * 150.02415 * 15 14 13 43 43 H 1.09002 * 109.46935 * 300.00366 * 16 15 14 44 44 H 1.09001 * 109.46812 * 60.00025 * 16 15 14 45 45 H 0.96991 * 120.00869 * 359.97438 * 17 16 15 46 46 H 0.97006 * 119.99942 * 179.97438 * 21 20 18 47 47 H 1.07998 * 120.00220 * 179.97438 * 26 14 13 48 48 H 1.07998 * 120.00407 * 0.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1315 0.7058 -0.0015 6 6 3.8456 3.0484 0.0001 7 6 5.3527 3.0484 -0.0013 8 8 5.9591 1.9981 -0.0022 9 7 6.0264 4.2157 -0.0006 10 6 7.4915 4.2157 -0.0014 11 6 7.9937 5.6366 -0.0009 12 6 8.2289 6.2869 -1.1978 13 6 8.6851 7.5918 -1.1975 14 6 8.9155 8.2430 -0.0001 15 6 9.4178 9.6639 0.0003 16 6 10.9479 9.6640 -0.0005 17 7 11.4360 11.0452 0.0005 18 6 12.7824 11.2955 -0.0006 19 1 13.4843 10.4747 -0.0017 20 6 13.2450 12.6043 -0.0002 21 7 12.3896 13.6046 0.0007 22 14 15.0815 12.9457 -0.0008 23 1 15.6955 12.3486 -1.2139 24 1 15.3123 14.4128 -0.0009 25 1 15.6967 12.3475 1.2111 26 6 8.6858 7.5908 1.1968 27 6 8.2247 6.2876 1.1965 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.3879 2.1185 0.0004 34 1 3.4827 3.5617 0.8906 35 1 3.4818 3.5628 -0.8894 36 1 5.5415 5.0557 0.0005 37 1 7.8553 3.7010 0.8880 38 1 7.8544 3.7027 -0.8920 39 1 8.0530 5.7766 -2.1333 40 1 8.8648 8.1013 -2.1326 41 1 9.0540 10.1782 -0.8892 42 1 9.0549 10.1772 0.8908 43 1 11.3117 9.1497 0.8890 44 1 11.3107 9.1506 -0.8910 45 1 10.8057 11.7825 0.0011 46 1 12.7129 14.5192 0.0013 47 1 8.8663 8.0995 2.1323 48 1 8.0457 5.7779 2.1316 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317370261.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:13 Heat of formation + Delta-G solvation = -47.758377 kcal Electronic energy + Delta-G solvation = -26254.501841 eV Core-core repulsion = 22309.121721 eV Total energy + Delta-G solvation = -3945.380120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.65358 -39.68379 -38.85322 -35.89753 -35.53766 -34.67439 -32.89740 -32.02901 -30.94601 -30.93257 -29.98230 -28.26815 -25.61601 -23.74136 -23.30261 -22.73552 -21.69269 -21.41045 -20.60619 -20.39867 -17.78099 -17.53626 -17.14390 -16.52909 -16.19528 -15.99001 -15.82067 -15.40348 -15.30058 -14.94933 -14.64154 -14.28652 -13.94108 -13.69942 -13.63492 -13.54656 -13.38273 -13.26067 -12.96681 -12.90802 -12.52268 -12.37778 -12.32147 -12.29729 -11.93632 -11.22496 -11.18872 -11.09372 -10.87775 -10.70169 -10.59794 -10.49915 -10.10452 -9.76341 -9.71151 -9.51110 -9.32209 -8.94045 -8.85755 -8.56127 -6.93216 -5.76870 -3.05858 1.18644 1.40225 2.23771 2.45597 2.48241 3.14671 3.44686 3.48738 3.49961 3.79197 4.10881 4.39041 4.49239 4.54351 4.57551 4.60498 4.69893 4.77818 4.77881 4.82013 4.97966 5.03458 5.15225 5.28498 5.37193 5.46476 5.49233 5.52292 5.53072 5.61646 5.76523 5.85944 5.90554 5.97151 6.07998 6.12366 6.20101 6.27232 6.44982 6.50015 6.60968 6.81068 6.92716 6.99412 7.01038 7.21812 7.69806 7.83714 8.03164 8.42132 9.53188 10.10367 10.45329 11.46023 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.047758 B = 0.001351 C = 0.001334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.150461 B =20723.685560 C =20978.838792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.738 5.738 4 C 0.510 3.490 5 O -0.492 6.492 6 C -0.166 4.166 7 C 0.510 3.490 8 O -0.497 6.497 9 N -0.728 5.728 10 C 0.167 3.833 11 C -0.126 4.126 12 C -0.099 4.099 13 C -0.118 4.118 14 C -0.052 4.052 15 C -0.094 4.094 16 C 0.161 3.839 17 N -0.734 5.734 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.935 5.935 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.118 4.118 27 C -0.099 4.099 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.399 0.601 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.401 0.599 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.384 0.616 46 H 0.256 0.744 47 H 0.125 0.875 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.439 -22.486 0.005 35.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.393 5.393 4 C 0.294 3.706 5 O -0.364 6.364 6 C -0.209 4.209 7 C 0.293 3.707 8 O -0.369 6.369 9 N -0.382 5.382 10 C 0.044 3.956 11 C -0.127 4.127 12 C -0.117 4.117 13 C -0.136 4.136 14 C -0.053 4.053 15 C -0.132 4.132 16 C 0.033 3.967 17 N -0.378 5.378 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.583 5.583 22 Si 0.739 3.261 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C -0.136 4.136 27 C -0.117 4.117 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.233 0.767 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.235 0.765 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.143 0.857 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -26.192 -24.022 0.003 35.540 hybrid contribution 0.229 1.445 -0.001 1.463 sum -25.963 -22.577 0.002 34.407 Atomic orbital electron populations 1.22005 0.94370 1.03341 1.02519 1.21278 0.94165 0.82895 1.02527 1.46051 1.06911 1.08979 1.77382 1.20024 0.82326 0.90845 0.77409 1.90881 1.54396 1.45452 1.45666 1.21595 0.95350 0.97184 1.06743 1.19947 0.88944 0.84080 0.77680 1.90878 1.69310 1.30464 1.46237 1.46100 1.07191 1.08391 1.76546 1.20132 0.79230 0.93183 1.03024 1.19711 1.03815 0.95379 0.93770 1.21017 0.98811 0.94683 0.97218 1.21126 0.99741 0.94675 0.98095 1.20084 0.95725 0.96532 0.92952 1.20875 0.97766 0.91412 1.03150 1.20589 0.89459 0.88575 0.98064 1.42360 1.04843 1.01011 1.89625 1.19201 0.83401 0.91806 1.42798 0.91218 1.24736 0.97702 0.95518 1.02953 1.69652 1.32717 0.98198 1.57767 0.86257 0.85108 0.76868 0.77906 1.21231 1.21638 1.21224 1.21124 0.99716 0.94697 0.98101 1.21017 0.98800 0.94701 0.97214 0.91943 0.91936 0.90745 0.91503 0.91505 0.76722 0.86025 0.86032 0.76529 0.90734 0.90741 0.86173 0.85724 0.90796 0.90797 0.96245 0.96247 0.78286 0.93455 0.85725 0.86173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.38 10.03 37.16 0.37 -0.01 16 2 C 0.11 0.60 6.39 -4.04 -0.03 0.57 16 3 N -0.74 -3.72 5.56 -60.29 -0.33 -4.06 16 4 C 0.51 4.40 7.82 -10.98 -0.09 4.31 16 5 O -0.49 -7.10 14.18 -18.95 -0.27 -7.37 16 6 C -0.17 -0.87 6.19 -29.03 -0.18 -1.05 16 7 C 0.51 4.94 7.82 -10.99 -0.09 4.85 16 8 O -0.50 -7.55 14.18 -18.96 -0.27 -7.82 16 9 N -0.73 -5.61 5.55 -61.47 -0.34 -5.95 16 10 C 0.17 1.57 5.80 -5.19 -0.03 1.54 16 11 C -0.13 -1.26 5.25 -104.62 -0.55 -1.81 16 12 C -0.10 -1.03 9.70 -39.58 -0.38 -1.42 16 13 C -0.12 -1.44 9.70 -39.58 -0.38 -1.82 16 14 C -0.05 -0.70 5.13 -104.62 -0.54 -1.24 16 15 C -0.09 -1.50 5.46 -27.88 -0.15 -1.65 16 16 C 0.16 3.26 6.24 -4.04 -0.03 3.24 16 17 N -0.73 -18.80 5.60 -59.91 -0.34 -19.13 16 18 C -0.24 -6.85 9.99 -15.05 -0.15 -7.00 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 22 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 26 C -0.12 -1.44 9.70 -39.58 -0.38 -1.82 16 27 C -0.10 -1.03 9.70 -39.58 -0.38 -1.42 16 28 H 0.06 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.06 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.40 0.65 8.47 -40.82 -0.35 0.30 16 34 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.40 2.09 8.46 -40.82 -0.35 1.74 16 37 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 38 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 39 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 40 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 41 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 42 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.38 10.19 7.67 -40.82 -0.31 9.88 16 46 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 47 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 48 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 LS Contribution 408.02 15.07 6.15 6.15 Total: -1.00 -38.14 408.02 -10.51 -48.65 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -7.73 Total: 4.83 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -3.08 Total: -5.18 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: -0.29 Total: -56.74 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.54 Total: -15.19 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -38.14 -10.51 -48.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317370261.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.892 kcal (2) G-P(sol) polarization free energy of solvation -38.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds