Wall clock time and date at job start Tue Mar 31 2020 17:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.46840 * 2 1 4 4 C 1.34779 * 119.99872 * 180.02562 * 3 2 1 5 5 O 1.21273 * 120.00093 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99944 * 180.02562 * 4 3 2 7 7 C 1.50701 * 109.47064 * 180.02562 * 6 4 3 8 8 O 1.21280 * 119.99781 * 359.97438 * 7 6 4 9 9 N 1.34771 * 119.99622 * 180.02562 * 7 6 4 10 10 C 1.46505 * 119.99622 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.47064 * 179.97438 * 10 9 7 12 12 C 1.38234 * 119.99770 * 269.72527 * 11 10 9 13 13 C 1.38239 * 119.99901 * 179.76875 * 12 11 10 14 14 C 1.38238 * 119.99492 * 0.48004 * 13 12 11 15 15 C 1.50706 * 119.99437 * 179.77082 * 14 13 12 16 16 C 1.53005 * 109.47127 * 270.02394 * 15 14 13 17 17 N 1.46495 * 109.46744 * 180.02562 * 16 15 14 18 18 C 1.36948 * 119.99382 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00308 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99528 * 179.97438 * 18 17 16 21 21 N 1.31620 * 120.00245 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99737 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47096 * 60.00203 * 22 20 18 24 24 H 1.48506 * 109.47221 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47110 * 299.99734 * 22 20 18 26 26 C 1.38225 * 120.00505 * 359.79428 * 14 13 12 27 27 C 1.38232 * 119.99860 * 89.99969 * 11 10 9 28 28 H 1.09001 * 109.47194 * 299.99493 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99666 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46741 * 240.00224 * 2 1 3 32 32 H 1.09002 * 109.47398 * 120.00326 * 2 1 3 33 33 H 0.97000 * 120.00420 * 0.02562 * 3 2 1 34 34 H 1.09001 * 109.46980 * 60.00059 * 6 4 3 35 35 H 1.09002 * 109.47152 * 300.00160 * 6 4 3 36 36 H 0.96996 * 120.00772 * 359.97438 * 9 7 6 37 37 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 38 38 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 39 39 H 1.08001 * 120.00330 * 359.97438 * 12 11 10 40 40 H 1.07993 * 120.00120 * 180.25541 * 13 12 11 41 41 H 1.09002 * 109.47512 * 30.02407 * 15 14 13 42 42 H 1.09001 * 109.46797 * 150.02415 * 15 14 13 43 43 H 1.09002 * 109.46935 * 300.00366 * 16 15 14 44 44 H 1.09001 * 109.46812 * 60.00025 * 16 15 14 45 45 H 0.96991 * 120.00869 * 359.97438 * 17 16 15 46 46 H 0.97006 * 119.99942 * 179.97438 * 21 20 18 47 47 H 1.07998 * 120.00220 * 179.97438 * 26 14 13 48 48 H 1.07998 * 120.00407 * 0.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1315 0.7058 -0.0015 6 6 3.8456 3.0484 0.0001 7 6 5.3527 3.0484 -0.0013 8 8 5.9591 1.9981 -0.0022 9 7 6.0264 4.2157 -0.0006 10 6 7.4915 4.2157 -0.0014 11 6 7.9937 5.6366 -0.0009 12 6 8.2289 6.2869 -1.1978 13 6 8.6851 7.5918 -1.1975 14 6 8.9155 8.2430 -0.0001 15 6 9.4178 9.6639 0.0003 16 6 10.9479 9.6640 -0.0005 17 7 11.4360 11.0452 0.0005 18 6 12.7824 11.2955 -0.0006 19 1 13.4843 10.4747 -0.0017 20 6 13.2450 12.6043 -0.0002 21 7 12.3896 13.6046 0.0007 22 14 15.0815 12.9457 -0.0008 23 1 15.6955 12.3486 -1.2139 24 1 15.3123 14.4128 -0.0009 25 1 15.6967 12.3475 1.2111 26 6 8.6858 7.5908 1.1968 27 6 8.2247 6.2876 1.1965 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.3879 2.1185 0.0004 34 1 3.4827 3.5617 0.8906 35 1 3.4818 3.5628 -0.8894 36 1 5.5415 5.0557 0.0005 37 1 7.8553 3.7010 0.8880 38 1 7.8544 3.7027 -0.8920 39 1 8.0530 5.7766 -2.1333 40 1 8.8648 8.1013 -2.1326 41 1 9.0540 10.1782 -0.8892 42 1 9.0549 10.1772 0.8908 43 1 11.3117 9.1497 0.8890 44 1 11.3107 9.1506 -0.8910 45 1 10.8057 11.7825 0.0011 46 1 12.7129 14.5192 0.0013 47 1 8.8663 8.0995 2.1323 48 1 8.0457 5.7779 2.1316 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317370261.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:12 Heat of formation + Delta-G solvation = -74.678914 kcal Electronic energy + Delta-G solvation = -26255.669203 eV Core-core repulsion = 22309.121721 eV Total energy + Delta-G solvation = -3946.547482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.35523 -40.53953 -39.62535 -37.19616 -36.27596 -35.85646 -34.29360 -32.89136 -32.22720 -31.82995 -30.66081 -29.46661 -26.88273 -25.18703 -23.94687 -23.62271 -23.12319 -22.13031 -21.56712 -21.15047 -19.22070 -18.41568 -18.14367 -17.13791 -16.93362 -16.77927 -16.66709 -16.62965 -16.19256 -15.94505 -15.76458 -15.39642 -15.11520 -15.08770 -14.76259 -14.55420 -14.37641 -14.26203 -13.70745 -13.67074 -13.48330 -13.25049 -12.94130 -12.89479 -12.82433 -12.67133 -12.51020 -12.34561 -12.32367 -12.17087 -12.01495 -11.78881 -11.68138 -11.22019 -10.94361 -10.55045 -10.07486 -10.05442 -9.80672 -9.53134 -9.02853 -7.96750 -5.26450 0.27564 0.51764 1.47296 1.50348 1.56634 1.64590 1.75838 1.93187 2.52762 2.56695 2.92585 3.36785 3.58948 3.64737 3.83999 3.89115 4.03675 4.16080 4.18900 4.20641 4.22262 4.38707 4.42132 4.45609 4.46727 4.51693 4.53353 4.58459 4.73490 4.76598 4.80037 4.97773 5.07255 5.08189 5.12308 5.26354 5.27699 5.28273 5.42399 5.46088 5.50852 5.51813 5.63902 5.79733 6.08220 6.25714 6.57642 6.64342 7.29001 7.32001 7.42474 8.06391 8.30995 9.26480 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.047758 B = 0.001351 C = 0.001334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.150461 B =20723.685560 C =20978.838792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.111 3.889 3 N -0.719 5.719 4 C 0.501 3.499 5 O -0.561 6.561 6 C -0.153 4.153 7 C 0.504 3.496 8 O -0.559 6.559 9 N -0.713 5.713 10 C 0.171 3.829 11 C -0.112 4.112 12 C -0.096 4.096 13 C -0.125 4.125 14 C -0.071 4.071 15 C -0.079 4.079 16 C 0.161 3.839 17 N -0.747 5.747 18 C -0.253 4.253 19 H 0.073 0.927 20 C -0.071 4.071 21 N -0.968 5.968 22 Si 0.974 3.026 23 H -0.278 1.278 24 H -0.292 1.292 25 H -0.278 1.278 26 C -0.125 4.125 27 C -0.096 4.096 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.419 0.581 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.416 0.584 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.139 0.861 40 H 0.127 0.873 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.375 0.625 46 H 0.253 0.747 47 H 0.127 0.873 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.193 -22.594 0.007 36.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.013 4.013 3 N -0.375 5.375 4 C 0.287 3.713 5 O -0.438 6.438 6 C -0.195 4.195 7 C 0.290 3.710 8 O -0.436 6.436 9 N -0.367 5.367 10 C 0.047 3.953 11 C -0.113 4.113 12 C -0.114 4.114 13 C -0.143 4.143 14 C -0.072 4.072 15 C -0.116 4.116 16 C 0.035 3.965 17 N -0.390 5.390 18 C -0.385 4.385 19 H 0.091 0.909 20 C -0.264 4.264 21 N -0.619 5.619 22 Si 0.802 3.198 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.204 1.204 26 C -0.143 4.143 27 C -0.114 4.114 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.257 0.743 34 H 0.180 0.820 35 H 0.180 0.820 36 H 0.254 0.746 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.157 0.843 40 H 0.145 0.855 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.207 0.793 46 H 0.062 0.938 47 H 0.145 0.855 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -28.022 -24.098 0.006 36.958 hybrid contribution 0.698 1.382 -0.002 1.548 sum -27.324 -22.716 0.004 35.533 Atomic orbital electron populations 1.21942 0.91660 1.04035 1.03531 1.21302 0.96260 0.82848 1.00922 1.45936 1.06339 1.09668 1.75519 1.20698 0.82751 0.91664 0.76196 1.90864 1.56241 1.47648 1.49065 1.21645 0.91780 0.95519 1.10511 1.20715 0.90787 0.83307 0.76164 1.90869 1.70872 1.32693 1.49145 1.45943 1.06468 1.08834 1.75486 1.19985 0.80398 0.92458 1.02431 1.19752 1.02744 0.95256 0.93541 1.21191 0.97988 0.93993 0.98240 1.21214 0.99927 0.95398 0.97744 1.19901 0.97771 0.95372 0.94146 1.20637 0.94431 0.93508 1.03070 1.20705 0.92631 0.85774 0.97427 1.42571 1.04003 1.02862 1.89545 1.19602 0.84852 0.92112 1.41904 0.90924 1.25565 1.02128 0.95369 1.03308 1.69804 1.34587 0.98303 1.59161 0.85212 0.79905 0.76415 0.78236 1.20372 1.21802 1.20362 1.21212 0.99904 0.95419 0.97750 1.21190 0.97973 0.94008 0.98235 0.90857 0.90853 0.90306 0.93234 0.93231 0.74321 0.81975 0.81985 0.74639 0.91457 0.91463 0.84319 0.85491 0.90894 0.90896 0.96559 0.96559 0.79268 0.93836 0.85491 0.84315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.43 10.03 71.98 0.72 0.29 16 2 C 0.11 1.12 6.39 86.38 0.55 1.67 16 3 N -0.72 -6.02 5.56 -463.06 -2.57 -8.59 16 4 C 0.50 8.13 7.82 87.66 0.69 8.82 16 5 O -0.56 -16.88 14.18 20.44 0.29 -16.59 16 6 C -0.15 -1.12 6.19 29.10 0.18 -0.94 16 7 C 0.50 9.00 7.82 87.66 0.69 9.69 16 8 O -0.56 -17.34 14.18 20.41 0.29 -17.05 16 9 N -0.71 -9.26 5.55 -466.78 -2.59 -11.85 16 10 C 0.17 2.93 5.80 85.63 0.50 3.43 16 11 C -0.11 -1.99 5.25 -19.87 -0.10 -2.09 16 12 C -0.10 -1.79 9.70 22.27 0.22 -1.57 16 13 C -0.12 -2.85 9.70 22.27 0.22 -2.63 16 14 C -0.07 -1.84 5.13 -19.87 -0.10 -1.94 16 15 C -0.08 -2.48 5.46 29.85 0.16 -2.32 16 16 C 0.16 6.57 6.24 86.38 0.54 7.11 16 17 N -0.75 -38.69 5.60 -343.45 -1.92 -40.62 16 18 C -0.25 -14.44 9.99 84.03 0.84 -13.60 16 19 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 20 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 21 N -0.97 -59.31 13.06 21.65 0.28 -59.03 16 22 Si 0.97 46.27 29.55 68.60 2.03 48.29 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 24 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 26 C -0.12 -2.85 9.70 22.27 0.22 -2.63 16 27 C -0.10 -1.79 9.70 22.27 0.22 -1.57 16 28 H 0.07 0.07 8.14 -2.39 -0.02 0.06 16 29 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.42 0.00 8.47 -92.71 -0.79 -0.79 16 34 H 0.16 -0.09 8.14 -2.39 -0.02 -0.11 16 35 H 0.16 -0.09 8.14 -2.39 -0.02 -0.11 16 36 H 0.42 2.83 8.46 -92.71 -0.78 2.04 16 37 H 0.07 1.29 8.09 -2.39 -0.02 1.27 16 38 H 0.07 1.29 8.08 -2.39 -0.02 1.27 16 39 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 40 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 41 H 0.07 2.28 8.09 -2.39 -0.02 2.26 16 42 H 0.07 2.28 8.09 -2.39 -0.02 2.26 16 43 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.38 20.34 7.67 -92.71 -0.71 19.63 16 46 H 0.25 14.97 8.31 -92.70 -0.77 14.20 16 47 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 48 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 Total: -1.00 -86.59 408.02 0.49 -86.10 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -1.30 Total: 21.29 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 5.99 Total: -1.95 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -6.80 Total: -120.09 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: 0.58 Total: -33.65 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Total: -86.59 0.49 -86.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317370261.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.424 kcal (2) G-P(sol) polarization free energy of solvation -86.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds