Wall clock time and date at job start Tue Mar 31 2020 17:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.46640 * 2 1 4 4 C 1.36933 * 119.99583 * 271.79274 * 3 2 1 5 5 H 1.08002 * 120.00281 * 38.31440 * 4 3 2 6 6 C 1.38820 * 120.00193 * 218.30493 * 4 3 2 7 7 N 1.31616 * 119.99434 * 20.85220 * 6 4 3 8 8 Si 1.86795 * 120.00118 * 200.85253 * 6 4 3 9 9 H 1.48497 * 109.47222 * 90.00105 * 8 6 4 10 10 H 1.48497 * 109.47063 * 210.00250 * 8 6 4 11 11 H 1.48500 * 109.47073 * 329.99860 * 8 6 4 12 12 C 1.46499 * 120.00226 * 91.80045 * 3 2 1 13 13 C 1.52997 * 109.47088 * 269.99558 * 12 3 2 14 14 N 1.46499 * 109.47088 * 179.97438 * 13 12 3 15 15 C 1.34778 * 119.99896 * 180.02562 * 14 13 12 16 16 O 1.21282 * 120.00094 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99915 * 179.97438 * 15 14 13 18 18 C 1.52997 * 109.47107 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.47300 * 180.02562 * 18 17 15 20 20 C 1.37982 * 120.07726 * 98.29168 * 19 18 17 21 21 C 1.38337 * 120.14537 * 179.97438 * 20 19 18 22 22 C 1.38372 * 120.29489 * 0.02562 * 21 20 19 23 23 C 1.37936 * 120.14693 * 359.97438 * 22 21 20 24 24 C 1.39561 * 120.07266 * 278.01613 * 19 18 17 25 25 C 1.47846 * 120.14376 * 0.02562 * 24 19 18 26 26 N 1.34774 * 120.00075 * 185.08443 * 25 24 19 27 27 O 1.21556 * 120.00037 * 5.08787 * 25 24 19 28 28 H 1.09000 * 109.47542 * 300.00037 * 1 2 3 29 29 H 1.09000 * 109.47674 * 60.00356 * 1 2 3 30 30 H 1.09006 * 109.47006 * 180.02562 * 1 2 3 31 31 H 1.08991 * 109.47319 * 239.99941 * 2 1 3 32 32 H 1.09001 * 109.47258 * 119.99312 * 2 1 3 33 33 H 0.97001 * 119.99476 * 180.02562 * 7 6 4 34 34 H 1.08996 * 109.47056 * 149.99389 * 12 3 2 35 35 H 1.09000 * 109.47092 * 29.99752 * 12 3 2 36 36 H 1.09005 * 109.47096 * 59.99976 * 13 12 3 37 37 H 1.09000 * 109.47312 * 300.00059 * 13 12 3 38 38 H 0.97001 * 120.00299 * 359.97438 * 14 13 12 39 39 H 1.09005 * 109.46772 * 60.00257 * 17 15 14 40 40 H 1.09000 * 109.47473 * 300.00441 * 17 15 14 41 41 H 1.08996 * 109.47310 * 60.00465 * 18 17 15 42 42 H 1.09000 * 109.47312 * 300.00537 * 18 17 15 43 43 H 1.07999 * 119.92319 * 359.97438 * 20 19 18 44 44 H 1.07998 * 119.84959 * 179.97438 * 21 20 19 45 45 H 1.08001 * 119.92984 * 179.97438 * 22 21 20 46 46 H 1.07999 * 120.07470 * 180.02562 * 23 22 21 47 47 H 0.97006 * 119.99824 * 0.02562 * 26 25 24 48 48 H 0.97002 * 120.00041 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2114 2.0391 -1.1853 5 1 1.5185 1.8963 -2.0014 6 6 3.2977 2.8898 -1.3381 7 7 4.3442 2.7688 -0.5491 8 14 3.2742 4.2059 -2.6634 9 1 2.6905 5.4545 -2.1108 10 1 4.6612 4.4694 -3.1240 11 1 2.4524 3.7401 -3.8092 12 6 2.2999 2.0587 1.2681 13 6 1.0387 2.7751 1.7548 14 7 1.3202 3.4519 3.0231 15 6 0.3497 4.1519 3.6434 16 8 -0.7569 4.2210 3.1517 17 6 0.6391 4.8477 4.9484 18 6 -0.6225 5.5631 5.4357 19 6 -0.3329 6.2594 6.7404 20 6 -0.0394 7.6076 6.7544 21 6 0.2261 8.2484 7.9514 22 6 0.1999 7.5430 9.1415 23 6 -0.0921 6.1949 9.1415 24 6 -0.3666 5.5434 7.9378 25 6 -0.6858 4.0998 7.9309 26 7 -0.8185 3.4334 9.0948 27 8 -0.8284 3.5139 6.8754 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 5.1031 3.3635 -0.6556 34 1 3.0977 2.7868 1.1216 35 1 2.6103 1.3242 2.0112 36 1 0.2408 2.0469 1.9012 37 1 0.7283 3.5096 1.0116 38 1 2.2049 3.3958 3.4170 39 1 1.4369 5.5760 4.8026 40 1 0.9494 4.1127 5.6911 41 1 -1.4199 4.8345 5.5815 42 1 -0.9332 6.2980 4.6931 43 1 -0.0169 8.1638 5.8289 44 1 0.4557 9.3036 7.9568 45 1 0.4085 8.0491 10.0725 46 1 -0.1126 5.6456 10.0712 47 1 -0.7050 3.9010 9.9371 48 1 -1.0283 2.4863 9.0902 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663442776.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:58 Heat of formation + Delta-G solvation = -62.853936 kcal Electronic energy + Delta-G solvation = -28265.725207 eV Core-core repulsion = 24319.690495 eV Total energy + Delta-G solvation = -3946.034712 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.47008 -40.53357 -39.09804 -38.13223 -35.68289 -35.41404 -34.30037 -33.85450 -31.80563 -31.63690 -30.70125 -29.19801 -26.46063 -25.62230 -24.67123 -23.36853 -22.43793 -22.16169 -21.51768 -21.14580 -18.92974 -18.71783 -17.92614 -17.76910 -17.11078 -16.90686 -16.70567 -16.45913 -16.05095 -15.96067 -15.83810 -15.55869 -15.42359 -14.89133 -14.70308 -14.40081 -14.12052 -13.99910 -13.85746 -13.60498 -13.58261 -13.27400 -13.03767 -12.81488 -12.66056 -12.61998 -12.37929 -12.30593 -12.14442 -12.04205 -11.91098 -11.69368 -11.52512 -10.95110 -10.73273 -10.58510 -10.56274 -10.00427 -9.91746 -9.69434 -8.61265 -7.87063 -5.51541 -0.10289 0.40315 1.42945 1.46678 1.53907 1.70394 1.92040 2.25855 2.50148 2.59034 2.89728 3.20570 3.62850 3.80452 3.83451 3.93642 4.01849 4.11960 4.23899 4.29735 4.31635 4.44260 4.45829 4.49958 4.55087 4.65693 4.75371 4.80046 4.81574 4.87311 4.95144 5.05867 5.07746 5.20028 5.24719 5.25422 5.35791 5.45656 5.53253 5.53799 5.62459 5.64648 5.72282 5.93069 5.97449 6.43928 6.47501 6.63598 7.12824 7.31573 7.36144 7.80107 8.33886 9.09061 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015228 B = 0.002508 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.264771 B =11162.694186 C =12326.049981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.137 3.863 3 N -0.598 5.598 4 C -0.272 4.272 5 H 0.051 0.949 6 C -0.029 4.029 7 N -0.911 5.911 8 Si 0.954 3.046 9 H -0.289 1.289 10 H -0.286 1.286 11 H -0.271 1.271 12 C 0.148 3.852 13 C 0.120 3.880 14 N -0.717 5.717 15 C 0.508 3.492 16 O -0.593 6.593 17 C -0.108 4.108 18 C -0.065 4.065 19 C -0.039 4.039 20 C -0.137 4.137 21 C -0.087 4.087 22 C -0.130 4.130 23 C -0.078 4.078 24 C -0.158 4.158 25 C 0.548 3.452 26 N -0.833 5.833 27 O -0.570 6.570 28 H 0.037 0.963 29 H 0.035 0.965 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.048 0.952 33 H 0.254 0.746 34 H 0.074 0.926 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.028 0.972 38 H 0.410 0.590 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.134 0.866 44 H 0.153 0.847 45 H 0.161 0.839 46 H 0.160 0.840 47 H 0.416 0.584 48 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.771 9.053 27.833 29.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.012 3.988 3 N -0.320 5.320 4 C -0.403 4.403 5 H 0.069 0.931 6 C -0.227 4.227 7 N -0.554 5.554 8 Si 0.782 3.218 9 H -0.216 1.216 10 H -0.212 1.212 11 H -0.196 1.196 12 C 0.021 3.979 13 C -0.007 4.007 14 N -0.369 5.369 15 C 0.297 3.703 16 O -0.474 6.474 17 C -0.148 4.148 18 C -0.103 4.103 19 C -0.040 4.040 20 C -0.155 4.155 21 C -0.105 4.105 22 C -0.148 4.148 23 C -0.096 4.096 24 C -0.161 4.161 25 C 0.336 3.664 26 N -0.398 5.398 27 O -0.451 6.451 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.046 0.954 38 H 0.246 0.754 39 H 0.126 0.874 40 H 0.119 0.881 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.151 0.849 44 H 0.170 0.830 45 H 0.179 0.821 46 H 0.177 0.823 47 H 0.248 0.752 48 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -6.425 8.901 26.718 28.885 hybrid contribution 0.244 0.283 -0.615 0.720 sum -6.181 9.184 26.103 28.353 Atomic orbital electron populations 1.22244 0.98129 1.00887 1.00269 1.21009 0.93023 0.85490 0.99316 1.43860 1.76785 1.09662 1.01656 1.19176 1.04863 1.23288 0.92938 0.93098 1.25824 0.93993 1.02784 1.00124 1.70087 1.04869 1.38382 1.42046 0.85487 0.76790 0.79797 0.79705 1.21604 1.21246 1.19617 1.20888 0.94286 0.96361 0.86401 1.21905 1.00199 0.94900 0.83663 1.46012 1.14839 1.52215 1.23848 1.21344 0.83857 0.78235 0.86910 1.90627 1.24707 1.63544 1.68514 1.21445 0.99990 1.00507 0.92814 1.20355 0.97800 0.98830 0.93278 1.19976 0.96012 0.94371 0.93644 1.21296 1.00926 0.93219 1.00061 1.21736 0.95475 1.01449 0.91842 1.21526 0.99847 0.93867 0.99516 1.21623 0.95835 0.95553 0.96581 1.19829 1.08228 0.93026 0.95013 1.18656 0.76043 0.87644 0.84103 1.43611 1.73578 1.14485 1.08093 1.90869 1.51937 1.70299 1.32004 0.94383 0.94592 0.91118 0.93966 0.93382 0.93628 0.90782 0.93957 0.93926 0.95384 0.75399 0.87434 0.88083 0.90562 0.92093 0.84854 0.82958 0.82100 0.82292 0.75203 0.75811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.04 10.23 71.98 0.74 -5.30 16 2 C 0.14 5.97 6.43 86.38 0.56 6.52 16 3 N -0.60 -30.67 2.42 -702.01 -1.70 -32.37 16 4 C -0.27 -15.31 9.46 84.04 0.79 -14.52 16 5 H 0.05 2.91 7.91 -2.91 -0.02 2.88 16 6 C -0.03 -1.63 4.96 84.86 0.42 -1.21 16 7 N -0.91 -52.36 11.49 21.65 0.25 -52.11 16 8 Si 0.95 45.46 29.60 68.60 2.03 47.50 16 9 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 10 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 11 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 12 C 0.15 7.03 5.45 86.38 0.47 7.50 16 13 C 0.12 5.43 6.00 86.38 0.52 5.95 16 14 N -0.72 -27.24 5.56 -463.06 -2.57 -29.81 16 15 C 0.51 19.70 7.83 87.66 0.69 20.38 16 16 O -0.59 -28.17 15.98 -3.04 -0.05 -28.21 16 17 C -0.11 -3.14 5.22 29.85 0.16 -2.98 16 18 C -0.07 -1.89 3.89 29.85 0.12 -1.77 16 19 C -0.04 -0.85 5.17 -19.61 -0.10 -0.95 16 20 C -0.14 -2.30 9.66 22.23 0.21 -2.08 16 21 C -0.09 -0.95 10.04 22.33 0.22 -0.73 16 22 C -0.13 -1.07 10.03 22.23 0.22 -0.85 16 23 C -0.08 -0.77 9.53 22.53 0.21 -0.56 16 24 C -0.16 -2.87 5.87 -20.09 -0.12 -2.99 16 25 C 0.55 11.48 7.92 86.79 0.69 12.17 16 26 N -0.83 -9.10 8.82 -175.60 -1.55 -10.65 16 27 O -0.57 -17.69 12.45 -3.89 -0.05 -17.74 16 28 H 0.04 1.52 6.38 -2.39 -0.02 1.50 16 29 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.04 1.86 8.05 -2.39 -0.02 1.84 16 32 H 0.05 1.93 7.87 -2.39 -0.02 1.91 16 33 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 34 H 0.07 3.92 5.55 -2.39 -0.01 3.90 16 35 H 0.04 1.86 7.88 -2.39 -0.02 1.84 16 36 H 0.04 1.99 6.38 -2.38 -0.02 1.98 16 37 H 0.03 1.44 8.14 -2.39 -0.02 1.43 16 38 H 0.41 13.05 8.47 -92.71 -0.79 12.26 16 39 H 0.11 2.56 8.14 -2.38 -0.02 2.54 16 40 H 0.10 2.87 6.61 -2.39 -0.02 2.85 16 41 H 0.08 2.70 5.89 -2.39 -0.01 2.69 16 42 H 0.06 1.82 7.98 -2.39 -0.02 1.80 16 43 H 0.13 2.06 8.05 -2.91 -0.02 2.04 16 44 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 45 H 0.16 0.28 8.06 -2.91 -0.02 0.26 16 46 H 0.16 0.36 6.44 -2.91 -0.02 0.34 16 47 H 0.42 1.35 6.89 -92.70 -0.64 0.71 16 48 H 0.41 4.01 8.93 -92.71 -0.83 3.18 16 Total: -1.00 -79.68 391.63 0.92 -78.76 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: -1.24 Total: 26.05 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: 5.80 Total: 18.59 kcal Atomic # 7 Polarization: -119.36 SS G_CDS: -5.57 Total: -124.94 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: -0.10 Total: -45.96 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.50 kcal Total: -79.68 0.92 -78.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663442776.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.908 kcal (2) G-P(sol) polarization free energy of solvation -79.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds