Wall clock time and date at job start Tue Mar 31 2020 18:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46701 * 2 1 4 4 C 1.35498 * 116.99378 * 180.02562 * 3 2 1 5 5 C 1.39178 * 119.52361 * 180.02562 * 4 3 2 6 6 C 1.37952 * 119.26171 * 179.97438 * 5 4 3 7 7 C 1.40281 * 118.36029 * 359.97438 * 6 5 4 8 8 C 1.47616 * 120.50064 * 179.97438 * 7 6 5 9 9 O 1.21586 * 119.99583 * 129.79095 * 8 7 6 10 10 N 1.34778 * 120.00378 * 309.79528 * 8 7 6 11 11 C 1.46922 * 120.62785 * 3.50436 * 10 8 7 12 12 C 1.52755 * 109.01123 * 233.58628 * 11 10 8 13 13 C 1.53036 * 109.38339 * 305.59027 * 12 11 10 14 14 C 1.53041 * 109.53814 * 61.23870 * 13 12 11 15 15 H 1.08993 * 109.49969 * 58.58467 * 14 13 12 16 16 C 1.53004 * 109.52380 * 178.66963 * 14 13 12 17 17 N 1.46500 * 109.46879 * 184.85493 * 16 14 13 18 18 C 1.36938 * 120.00015 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99588 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00397 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00194 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99769 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46902 * 90.00180 * 22 20 18 24 24 H 1.48498 * 109.47457 * 210.00460 * 22 20 18 25 25 H 1.48508 * 109.47112 * 330.00322 * 22 20 18 26 26 C 1.46922 * 120.63361 * 183.78750 * 10 8 7 27 27 C 1.39529 * 119.00285 * 0.02562 * 7 6 5 28 28 N 1.31664 * 120.62712 * 359.74093 * 27 7 6 29 29 H 1.09003 * 109.47487 * 300.00307 * 1 2 3 30 30 H 1.09003 * 109.47440 * 59.99686 * 1 2 3 31 31 H 1.09004 * 109.47370 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46934 * 239.99598 * 2 1 3 33 33 H 1.09000 * 109.46862 * 119.99582 * 2 1 3 34 34 H 1.07996 * 120.36748 * 359.94634 * 5 4 3 35 35 H 1.07995 * 120.82098 * 179.97438 * 6 5 4 36 36 H 1.09003 * 109.58555 * 353.42810 * 11 10 8 37 37 H 1.09003 * 109.58637 * 113.84237 * 11 10 8 38 38 H 1.09002 * 109.56459 * 185.55050 * 12 11 10 39 39 H 1.09004 * 109.36180 * 65.50015 * 12 11 10 40 40 H 1.08999 * 109.46401 * 301.21782 * 13 12 11 41 41 H 1.08998 * 109.45147 * 181.25432 * 13 12 11 42 42 H 1.08998 * 109.47075 * 304.84861 * 16 14 13 43 43 H 1.09000 * 109.47179 * 64.85075 * 16 14 13 44 44 H 0.96999 * 120.00414 * 359.97438 * 17 16 14 45 45 H 0.97001 * 119.99786 * 179.97438 * 21 20 18 46 46 H 1.08992 * 109.58877 * 246.15567 * 26 10 8 47 47 H 1.09003 * 109.58492 * 6.43906 * 26 10 8 48 48 H 1.08001 * 119.68257 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3495 1.5248 -0.0005 5 6 3.8708 2.8153 0.0000 6 6 5.2393 2.9897 0.0000 7 6 6.0564 1.8495 0.0000 8 6 7.5267 1.9813 -0.0006 9 8 8.1926 1.3646 0.8084 10 7 8.1309 2.7853 -0.8978 11 6 7.3365 3.5955 -1.8312 12 6 7.8045 3.3135 -3.2576 13 6 9.3143 3.5449 -3.3519 14 6 10.0393 2.5855 -2.4052 15 1 9.7921 1.5574 -2.6697 16 6 11.5503 2.7943 -2.5241 17 7 12.2467 1.7985 -1.7057 18 6 13.6151 1.7894 -1.6555 19 1 14.1809 2.5165 -2.2190 20 6 14.2750 0.8456 -0.8805 21 7 15.5903 0.8372 -0.8320 22 14 13.2963 -0.4116 0.0946 23 1 13.0707 -1.6189 -0.7401 24 1 14.0523 -0.7884 1.3159 25 1 11.9877 0.1731 0.4833 26 6 9.5964 2.8636 -0.9653 27 6 5.4585 0.5888 -0.0005 28 7 4.1474 0.4682 0.0041 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.2114 3.6705 -0.0001 35 1 5.6709 3.9797 -0.0001 36 1 6.2824 3.3347 -1.7356 37 1 7.4751 4.6531 -1.6064 38 1 7.2902 3.9809 -3.9492 39 1 7.5784 2.2785 -3.5142 40 1 9.5424 4.5732 -3.0714 41 1 9.6459 3.3656 -4.3746 42 1 11.8516 2.6833 -3.5657 43 1 11.8074 3.7947 -2.1761 44 1 11.7385 1.1457 -1.1993 45 1 16.0514 0.1779 -0.2901 46 1 9.9232 3.8601 -0.6685 47 1 10.0331 2.1216 -0.2968 48 1 6.0771 -0.2965 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714064932.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:57 Heat of formation + Delta-G solvation = -22.610465 kcal Electronic energy + Delta-G solvation = -28603.183242 eV Core-core repulsion = 24658.893617 eV Total energy + Delta-G solvation = -3944.289624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.31102 -40.11070 -38.39756 -37.54914 -35.19339 -33.44470 -32.72770 -32.41989 -31.81124 -30.64160 -30.04034 -26.12752 -25.82274 -24.77910 -23.84396 -23.02250 -22.62604 -21.32367 -20.59550 -19.47831 -18.96695 -17.82576 -17.37584 -17.10366 -16.73993 -16.25634 -15.30284 -15.02861 -14.94137 -14.68910 -14.50808 -14.37330 -14.27262 -13.95073 -13.89084 -13.54524 -13.13711 -13.05701 -12.99463 -12.81761 -12.68929 -12.56755 -12.43256 -12.01384 -11.68613 -11.45286 -11.23886 -11.16170 -10.93562 -10.72670 -10.50852 -10.37221 -10.33553 -10.17992 -10.05056 -9.76490 -9.52849 -8.93999 -8.86137 -8.65248 -7.19430 -5.72670 -3.08378 0.51030 0.75107 2.49855 2.57209 2.85985 3.35993 3.45422 3.52406 3.54262 3.84345 4.20500 4.39296 4.52708 4.56706 4.58606 4.64150 4.65580 4.67709 4.79160 4.83164 4.94239 5.04524 5.16520 5.18871 5.27285 5.30746 5.37662 5.39446 5.50091 5.57394 5.58350 5.61754 5.63505 5.71875 5.79514 5.87201 5.91301 5.98753 6.00993 6.26678 6.32070 6.45844 6.65596 6.74949 6.77734 7.26659 7.38926 8.02671 8.05122 8.46154 9.25209 9.98039 10.17080 11.45444 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017582 B = 0.002606 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.196423 B =10741.219407 C =11808.492923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.304 6.304 4 C 0.338 3.662 5 C -0.194 4.194 6 C -0.013 4.013 7 C -0.213 4.213 8 C 0.564 3.436 9 O -0.525 6.525 10 N -0.603 5.603 11 C 0.098 3.902 12 C -0.134 4.134 13 C -0.112 4.112 14 C -0.111 4.111 15 H 0.074 0.926 16 C 0.165 3.835 17 N -0.757 5.757 18 C -0.245 4.245 19 H 0.090 0.910 20 C 0.006 3.994 21 N -0.934 5.934 22 Si 0.880 3.120 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.272 1.272 26 C 0.118 3.882 27 C 0.194 3.806 28 N -0.540 5.540 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.031 0.969 43 H 0.029 0.971 44 H 0.362 0.638 45 H 0.259 0.741 46 H 0.072 0.928 47 H 0.099 0.901 48 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.070 5.723 -2.489 32.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.211 6.211 4 C 0.159 3.841 5 C -0.215 4.215 6 C -0.038 4.038 7 C -0.219 4.219 8 C 0.351 3.649 9 O -0.402 6.402 10 N -0.336 5.336 11 C -0.025 4.025 12 C -0.172 4.172 13 C -0.150 4.150 14 C -0.131 4.131 15 H 0.092 0.908 16 C 0.037 3.963 17 N -0.403 5.403 18 C -0.375 4.375 19 H 0.108 0.892 20 C -0.190 4.190 21 N -0.582 5.582 22 Si 0.710 3.290 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.198 1.198 26 C -0.003 4.003 27 C 0.037 3.963 28 N -0.264 5.264 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.049 0.951 43 H 0.046 0.954 44 H 0.195 0.805 45 H 0.069 0.931 46 H 0.090 0.910 47 H 0.117 0.883 48 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -32.090 4.820 -2.077 32.517 hybrid contribution -0.130 -0.352 0.680 0.777 sum -32.220 4.469 -1.397 32.559 Atomic orbital electron populations 1.21831 0.92833 1.03072 1.03345 1.22677 0.94858 0.80689 1.02884 1.86202 1.16732 1.31161 1.87029 1.20036 0.84149 0.90016 0.89946 1.20981 0.95425 0.95913 1.09157 1.21570 0.92126 0.98796 0.91325 1.20781 0.94716 0.95487 1.10891 1.18000 0.86559 0.79274 0.81095 1.90869 1.65535 1.45801 1.37948 1.48100 1.07763 1.43231 1.34506 1.21941 0.95797 0.95307 0.89458 1.21841 0.97135 1.02489 0.95759 1.21512 0.93764 0.99715 1.00006 1.21753 0.96973 1.00150 0.94232 0.90787 1.20613 0.87531 0.93065 0.95057 1.42767 1.04280 1.36993 1.56232 1.19032 0.80757 1.13530 1.24140 0.89229 1.24660 0.95273 0.99075 1.00020 1.69703 1.06038 1.38018 1.44442 0.86613 0.79889 0.82356 0.80186 1.21133 1.21695 1.19767 1.21790 0.77182 1.03383 0.97956 1.22525 0.88683 0.96360 0.88724 1.67421 1.06173 1.32704 1.20060 0.91605 0.91592 0.90144 0.91332 0.91333 0.83396 0.83335 0.89613 0.90969 0.90661 0.91537 0.91484 0.91226 0.95103 0.95357 0.80517 0.93093 0.90970 0.88310 0.81436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.28 37.16 0.38 -0.37 16 2 C 0.06 0.47 6.02 37.16 0.22 0.69 16 3 O -0.30 -2.82 10.10 -18.19 -0.18 -3.00 16 4 C 0.34 3.38 7.49 -16.95 -0.13 3.25 16 5 C -0.19 -1.57 10.02 -39.34 -0.39 -1.97 16 6 C -0.01 -0.11 7.48 -38.92 -0.29 -0.40 16 7 C -0.21 -2.40 5.02 -104.82 -0.53 -2.93 16 8 C 0.56 8.11 7.25 -12.43 -0.09 8.02 16 9 O -0.53 -9.98 16.47 5.29 0.09 -9.89 16 10 N -0.60 -7.68 2.98 -174.24 -0.52 -8.20 16 11 C 0.10 0.85 5.37 -3.94 -0.02 0.83 16 12 C -0.13 -1.17 6.06 -26.84 -0.16 -1.33 16 13 C -0.11 -1.21 5.17 -26.69 -0.14 -1.35 16 14 C -0.11 -1.65 2.37 -90.50 -0.21 -1.86 16 15 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 16 C 0.17 3.10 5.66 -4.04 -0.02 3.08 16 17 N -0.76 -18.24 5.18 -59.91 -0.31 -18.55 16 18 C -0.24 -7.05 10.47 -15.06 -0.16 -7.21 16 19 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 20 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 21 N -0.93 -29.93 13.97 55.49 0.78 -29.15 16 22 Si 0.88 23.17 27.73 -169.99 -4.71 18.45 16 23 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 25 H -0.27 -6.96 6.52 56.52 0.37 -6.59 16 26 C 0.12 1.81 5.51 -3.71 -0.02 1.79 16 27 C 0.19 2.21 10.90 -17.14 -0.19 2.02 16 28 N -0.54 -6.00 9.18 -12.96 -0.12 -6.12 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 33 H 0.07 0.53 8.10 -51.93 -0.42 0.10 16 34 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.15 0.91 7.11 -52.49 -0.37 0.54 16 36 H 0.09 0.63 4.54 -51.93 -0.24 0.40 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.36 8.75 4.76 -40.82 -0.19 8.56 16 45 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 46 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.10 1.89 6.23 -51.93 -0.32 1.57 16 48 H 0.17 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 385.95 15.07 5.82 5.82 Total: -1.00 -35.53 385.95 -8.49 -44.02 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.48 Total: 4.27 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -1.84 Total: 2.35 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: -0.17 Total: -62.02 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.10 Total: -12.89 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -4.71 Total: 18.45 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.53 -8.49 -44.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714064932.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.413 kcal (2) G-P(sol) polarization free energy of solvation -35.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds