Wall clock time and date at job start Tue Mar 31 2020 18:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42902 * 109.46701 * 2 1 4 4 C 1.35498 * 116.99378 * 180.02562 * 3 2 1 5 5 C 1.39178 * 119.52361 * 180.02562 * 4 3 2 6 6 C 1.37952 * 119.26171 * 179.97438 * 5 4 3 7 7 C 1.40281 * 118.36029 * 359.97438 * 6 5 4 8 8 C 1.47616 * 120.50064 * 179.97438 * 7 6 5 9 9 O 1.21586 * 119.99583 * 129.79095 * 8 7 6 10 10 N 1.34778 * 120.00378 * 309.79528 * 8 7 6 11 11 C 1.46922 * 120.62785 * 3.50436 * 10 8 7 12 12 C 1.52755 * 109.01123 * 233.58628 * 11 10 8 13 13 C 1.53036 * 109.38339 * 305.59027 * 12 11 10 14 14 C 1.53041 * 109.53814 * 61.23870 * 13 12 11 15 15 H 1.08993 * 109.49969 * 58.58467 * 14 13 12 16 16 C 1.53004 * 109.52380 * 178.66963 * 14 13 12 17 17 N 1.46500 * 109.46879 * 184.85493 * 16 14 13 18 18 C 1.36938 * 120.00015 * 179.97438 * 17 16 14 19 19 H 1.08001 * 119.99588 * 0.02562 * 18 17 16 20 20 C 1.38812 * 120.00397 * 180.02562 * 18 17 16 21 21 N 1.31617 * 120.00194 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99769 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46902 * 90.00180 * 22 20 18 24 24 H 1.48498 * 109.47457 * 210.00460 * 22 20 18 25 25 H 1.48508 * 109.47112 * 330.00322 * 22 20 18 26 26 C 1.46922 * 120.63361 * 183.78750 * 10 8 7 27 27 C 1.39529 * 119.00285 * 0.02562 * 7 6 5 28 28 N 1.31664 * 120.62712 * 359.74093 * 27 7 6 29 29 H 1.09003 * 109.47487 * 300.00307 * 1 2 3 30 30 H 1.09003 * 109.47440 * 59.99686 * 1 2 3 31 31 H 1.09004 * 109.47370 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46934 * 239.99598 * 2 1 3 33 33 H 1.09000 * 109.46862 * 119.99582 * 2 1 3 34 34 H 1.07996 * 120.36748 * 359.94634 * 5 4 3 35 35 H 1.07995 * 120.82098 * 179.97438 * 6 5 4 36 36 H 1.09003 * 109.58555 * 353.42810 * 11 10 8 37 37 H 1.09003 * 109.58637 * 113.84237 * 11 10 8 38 38 H 1.09002 * 109.56459 * 185.55050 * 12 11 10 39 39 H 1.09004 * 109.36180 * 65.50015 * 12 11 10 40 40 H 1.08999 * 109.46401 * 301.21782 * 13 12 11 41 41 H 1.08998 * 109.45147 * 181.25432 * 13 12 11 42 42 H 1.08998 * 109.47075 * 304.84861 * 16 14 13 43 43 H 1.09000 * 109.47179 * 64.85075 * 16 14 13 44 44 H 0.96999 * 120.00414 * 359.97438 * 17 16 14 45 45 H 0.97001 * 119.99786 * 179.97438 * 21 20 18 46 46 H 1.08992 * 109.58877 * 246.15567 * 26 10 8 47 47 H 1.09003 * 109.58492 * 6.43906 * 26 10 8 48 48 H 1.08001 * 119.68257 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3495 1.5248 -0.0005 5 6 3.8708 2.8153 0.0000 6 6 5.2393 2.9897 0.0000 7 6 6.0564 1.8495 0.0000 8 6 7.5267 1.9813 -0.0006 9 8 8.1926 1.3646 0.8084 10 7 8.1309 2.7853 -0.8978 11 6 7.3365 3.5955 -1.8312 12 6 7.8045 3.3135 -3.2576 13 6 9.3143 3.5449 -3.3519 14 6 10.0393 2.5855 -2.4052 15 1 9.7921 1.5574 -2.6697 16 6 11.5503 2.7943 -2.5241 17 7 12.2467 1.7985 -1.7057 18 6 13.6151 1.7894 -1.6555 19 1 14.1809 2.5165 -2.2190 20 6 14.2750 0.8456 -0.8805 21 7 15.5903 0.8372 -0.8320 22 14 13.2963 -0.4116 0.0946 23 1 13.0707 -1.6189 -0.7401 24 1 14.0523 -0.7884 1.3159 25 1 11.9877 0.1731 0.4833 26 6 9.5964 2.8636 -0.9653 27 6 5.4585 0.5888 -0.0005 28 7 4.1474 0.4682 0.0041 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.2114 3.6705 -0.0001 35 1 5.6709 3.9797 -0.0001 36 1 6.2824 3.3347 -1.7356 37 1 7.4751 4.6531 -1.6064 38 1 7.2902 3.9809 -3.9492 39 1 7.5784 2.2785 -3.5142 40 1 9.5424 4.5732 -3.0714 41 1 9.6459 3.3656 -4.3746 42 1 11.8516 2.6833 -3.5657 43 1 11.8074 3.7947 -2.1761 44 1 11.7385 1.1457 -1.1993 45 1 16.0514 0.1779 -0.2901 46 1 9.9232 3.8601 -0.6685 47 1 10.0331 2.1216 -0.2968 48 1 6.0771 -0.2965 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714064932.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:56 Heat of formation + Delta-G solvation = -48.115642 kcal Electronic energy + Delta-G solvation = -28604.289229 eV Core-core repulsion = 24658.893617 eV Total energy + Delta-G solvation = -3945.395612 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.13795 -41.03954 -39.24125 -38.61870 -36.80194 -34.74214 -33.69457 -33.27941 -33.07044 -31.86128 -31.11183 -27.56736 -26.88464 -25.47536 -24.73780 -24.51375 -23.30049 -22.62481 -21.81906 -20.45504 -19.70954 -19.63214 -18.49703 -17.96683 -17.44662 -17.26406 -16.68716 -16.29951 -16.08862 -15.78390 -15.65129 -15.32629 -15.13152 -14.97175 -14.92549 -14.65907 -14.41096 -14.15710 -14.07114 -13.83369 -13.73741 -13.41961 -13.33397 -13.30327 -12.99994 -12.71873 -12.52441 -12.26244 -12.06257 -11.91762 -11.86263 -11.76696 -11.61318 -11.40816 -11.30109 -11.03052 -10.92222 -10.69187 -9.81437 -9.59305 -9.31570 -8.06794 -5.38370 -0.28786 0.05540 1.32571 1.36146 1.42493 1.48041 1.83727 1.95148 2.42788 2.56929 3.09479 3.25255 3.34778 3.53622 3.69583 3.83402 3.85532 3.90557 3.95035 4.05561 4.06304 4.09879 4.17062 4.28070 4.40652 4.43608 4.56236 4.58646 4.66121 4.74281 4.77954 4.82459 4.85557 4.90063 4.93066 4.94198 5.03169 5.10527 5.17967 5.20115 5.26054 5.32423 5.45018 5.49422 5.73329 6.08474 6.18266 6.28413 6.61380 6.99034 7.04391 7.82174 7.98288 9.14627 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017582 B = 0.002606 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.196423 B =10741.219407 C =11808.492923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.059 3.941 3 O -0.307 6.307 4 C 0.325 3.675 5 C -0.180 4.180 6 C -0.001 4.001 7 C -0.222 4.222 8 C 0.561 3.439 9 O -0.585 6.585 10 N -0.597 5.597 11 C 0.091 3.909 12 C -0.128 4.128 13 C -0.107 4.107 14 C -0.099 4.099 15 H 0.059 0.941 16 C 0.160 3.840 17 N -0.762 5.762 18 C -0.229 4.229 19 H 0.065 0.935 20 C -0.058 4.058 21 N -0.979 5.979 22 Si 0.944 3.056 23 H -0.278 1.278 24 H -0.293 1.293 25 H -0.266 1.266 26 C 0.122 3.878 27 C 0.182 3.818 28 N -0.555 5.555 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.181 0.819 35 H 0.180 0.820 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.361 0.639 45 H 0.258 0.742 46 H 0.081 0.919 47 H 0.054 0.946 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.903 7.710 -3.461 36.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 O -0.214 6.214 4 C 0.146 3.854 5 C -0.200 4.200 6 C -0.026 4.026 7 C -0.227 4.227 8 C 0.350 3.650 9 O -0.466 6.466 10 N -0.328 5.328 11 C -0.029 4.029 12 C -0.166 4.166 13 C -0.144 4.144 14 C -0.119 4.119 15 H 0.077 0.923 16 C 0.034 3.966 17 N -0.408 5.408 18 C -0.360 4.360 19 H 0.083 0.917 20 C -0.250 4.250 21 N -0.630 5.630 22 Si 0.772 3.228 23 H -0.204 1.204 24 H -0.220 1.220 25 H -0.191 1.191 26 C -0.001 4.001 27 C 0.025 3.975 28 N -0.279 5.279 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.114 0.886 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.198 0.802 35 H 0.197 0.803 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.129 0.871 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.194 0.806 45 H 0.067 0.933 46 H 0.099 0.901 47 H 0.072 0.928 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -35.994 6.851 -3.107 36.772 hybrid contribution 1.005 -0.884 0.902 1.614 sum -34.989 5.967 -2.205 35.563 Atomic orbital electron populations 1.21834 0.90815 1.04222 1.03582 1.22829 0.96427 0.79974 1.02326 1.86214 1.16301 1.32063 1.86854 1.20440 0.84408 0.90668 0.89851 1.21323 0.95563 0.96007 1.07131 1.21845 0.91916 0.98947 0.89856 1.20548 0.92901 0.96565 1.12727 1.18478 0.87703 0.78427 0.80398 1.90834 1.67043 1.48209 1.40465 1.48160 1.06889 1.43111 1.34667 1.22325 0.96111 0.96083 0.88410 1.21838 0.95503 1.02840 0.96425 1.21508 0.94905 0.99092 0.98942 1.21614 0.94369 1.00713 0.95164 0.92278 1.20853 0.90002 0.91760 0.94024 1.42868 1.02762 1.38201 1.56930 1.19075 0.82770 1.11889 1.22239 0.91722 1.25356 0.96149 1.01560 1.01918 1.69848 1.07686 1.39360 1.46103 0.85582 0.78531 0.80094 0.78594 1.20442 1.21977 1.19136 1.21538 0.79027 1.02327 0.97212 1.22432 0.88928 0.96491 0.89677 1.67377 1.05972 1.33756 1.20750 0.91440 0.91199 0.88578 0.91730 0.92110 0.80171 0.80321 0.87734 0.88128 0.87075 0.92626 0.89956 0.90603 0.94847 0.94804 0.80581 0.93320 0.90076 0.92751 0.82395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 71.98 0.74 -0.43 16 2 C 0.06 0.80 6.02 71.98 0.43 1.24 16 3 O -0.31 -5.09 10.10 -87.99 -0.89 -5.97 16 4 C 0.33 5.85 7.49 84.83 0.64 6.49 16 5 C -0.18 -2.24 10.02 22.43 0.22 -2.02 16 6 C 0.00 -0.01 7.48 22.70 0.17 0.16 16 7 C -0.22 -4.72 5.02 -19.99 -0.10 -4.82 16 8 C 0.56 15.99 7.25 86.72 0.63 16.62 16 9 O -0.58 -23.13 16.47 -3.99 -0.07 -23.19 16 10 N -0.60 -14.25 2.98 -823.43 -2.45 -16.70 16 11 C 0.09 1.21 5.37 86.22 0.46 1.68 16 12 C -0.13 -1.69 6.06 30.52 0.19 -1.51 16 13 C -0.11 -1.95 5.17 30.62 0.16 -1.79 16 14 C -0.10 -2.81 2.37 -10.71 -0.03 -2.84 16 15 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 16 C 0.16 5.93 5.66 86.38 0.49 6.42 16 17 N -0.76 -37.13 5.18 -343.44 -1.78 -38.91 16 18 C -0.23 -13.45 10.47 84.03 0.88 -12.57 16 19 H 0.06 4.07 8.06 -2.91 -0.02 4.05 16 20 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 21 N -0.98 -64.45 13.97 21.65 0.30 -64.15 16 22 Si 0.94 49.34 27.73 68.60 1.90 51.25 16 23 H -0.28 -14.14 7.11 99.48 0.71 -13.44 16 24 H -0.29 -15.36 7.11 99.48 0.71 -14.66 16 25 H -0.27 -13.50 6.52 99.48 0.65 -12.86 16 26 C 0.12 3.66 5.51 86.36 0.48 4.14 16 27 C 0.18 4.14 10.90 85.03 0.93 5.06 16 28 N -0.55 -11.97 9.18 -307.80 -2.82 -14.79 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 33 H 0.06 0.90 8.10 -2.39 -0.02 0.89 16 34 H 0.18 1.10 8.06 -2.91 -0.02 1.07 16 35 H 0.18 1.28 7.11 -2.91 -0.02 1.26 16 36 H 0.10 1.05 4.54 -2.39 -0.01 1.04 16 37 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.36 17.71 4.76 -92.71 -0.44 17.27 16 45 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 46 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.05 2.15 6.23 -2.39 -0.01 2.13 16 48 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -81.31 385.95 1.41 -79.90 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.46 Total: 19.86 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: 6.75 Total: 12.72 kcal Atomic # 7 Polarization: -127.81 SS G_CDS: -6.75 Total: -134.56 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.95 Total: -29.17 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 1.90 Total: 51.25 kcal Total: -81.31 1.41 -79.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714064932.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.786 kcal (2) G-P(sol) polarization free energy of solvation -81.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds