Wall clock time and date at job start Tue Mar 31 2020 17:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47134 * 2 1 4 4 C 1.34778 * 120.00332 * 94.01736 * 3 2 1 5 5 O 1.21284 * 120.00018 * 184.38956 * 4 3 2 6 6 C 1.50699 * 119.99766 * 4.11543 * 4 3 2 7 7 H 1.09005 * 109.47099 * 309.13208 * 6 4 3 8 8 C 1.53003 * 109.46997 * 69.13092 * 6 4 3 9 9 O 1.42901 * 109.47159 * 189.13318 * 6 4 3 10 10 C 1.35677 * 116.99761 * 150.00122 * 9 6 4 11 11 C 1.38921 * 119.68359 * 179.73008 * 10 9 6 12 12 C 1.38369 * 119.11252 * 179.70794 * 11 10 9 13 13 C 1.38831 * 118.48499 * 0.55052 * 12 11 10 14 14 C 1.38040 * 119.28821 * 359.73101 * 13 12 11 15 15 N 1.31967 * 120.83616 * 359.97438 * 14 13 12 16 16 C 1.46509 * 119.99976 * 274.01615 * 3 2 1 17 17 H 1.08998 * 110.88524 * 9.38059 * 16 3 2 18 18 C 1.55156 * 111.00314 * 245.49502 * 16 3 2 19 19 C 1.54318 * 102.94480 * 277.42808 * 18 16 3 20 20 N 1.47026 * 107.27299 * 337.80788 * 19 18 16 21 21 C 1.36927 * 125.65219 * 178.98491 * 20 19 18 22 22 H 1.08007 * 119.99997 * 186.13782 * 21 20 19 23 23 C 1.38814 * 119.99975 * 6.13766 * 21 20 19 24 24 N 1.31610 * 119.99834 * 6.27277 * 23 21 20 25 25 Si 1.86801 * 119.99821 * 186.26709 * 23 21 20 26 26 H 1.48497 * 109.46841 * 94.99785 * 25 23 21 27 27 H 1.48505 * 109.47028 * 214.99358 * 25 23 21 28 28 H 1.48500 * 109.47642 * 334.99675 * 25 23 21 29 29 C 1.47432 * 108.70077 * 358.94042 * 20 19 18 30 30 H 1.09002 * 109.47320 * 299.99971 * 1 2 3 31 31 H 1.09004 * 109.47336 * 60.00135 * 1 2 3 32 32 H 1.09000 * 109.47525 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47320 * 240.00029 * 2 1 3 34 34 H 1.08996 * 109.47390 * 120.00145 * 2 1 3 35 35 H 1.08993 * 109.47265 * 306.00424 * 8 6 4 36 36 H 1.08999 * 109.46694 * 66.01034 * 8 6 4 37 37 H 1.09005 * 109.47043 * 186.00315 * 8 6 4 38 38 H 1.08000 * 120.43875 * 359.97438 * 11 10 9 39 39 H 1.08000 * 120.76249 * 180.28185 * 12 11 10 40 40 H 1.08005 * 120.35467 * 179.70937 * 13 12 11 41 41 H 1.08002 * 119.58390 * 179.97438 * 14 13 12 42 42 H 1.08998 * 110.72023 * 35.79478 * 18 16 3 43 43 H 1.09007 * 110.71767 * 158.88567 * 18 16 3 44 44 H 1.09001 * 109.88647 * 97.22384 * 19 18 16 45 45 H 1.09000 * 109.88374 * 218.39711 * 19 18 16 46 46 H 0.97005 * 119.99832 * 179.97438 * 24 23 21 47 47 H 1.08999 * 110.36718 * 265.28730 * 29 20 19 48 48 H 1.09001 * 110.36733 * 142.96291 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3200 1.9893 1.1643 5 8 2.6479 3.1570 1.1714 6 6 2.2440 1.2201 2.4580 7 1 1.2767 0.7226 2.5286 8 6 3.3596 0.1737 2.4954 9 8 2.3981 2.1202 3.5571 10 6 1.7702 1.7924 4.7143 11 6 1.8870 2.6250 5.8202 12 6 1.2368 2.2824 6.9925 13 6 0.4983 1.1072 7.0210 14 6 0.4307 0.3245 5.8859 15 7 1.0572 0.6806 4.7804 16 6 2.1787 2.1014 -1.2657 17 1 1.7419 1.5390 -2.0909 18 6 3.6724 2.4201 -1.5388 19 6 3.9090 3.7019 -0.7127 20 7 2.5983 4.3338 -0.5022 21 6 2.3716 5.4855 0.2028 22 1 1.3599 5.8170 0.3847 23 6 3.4420 6.2271 0.6837 24 7 4.6728 5.8930 0.3587 25 14 3.1354 7.6992 1.7920 26 1 3.2450 7.2806 3.2125 27 1 4.1434 8.7518 1.5070 28 1 1.7742 8.2355 1.5377 29 6 1.5686 3.5226 -1.1770 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.3059 -0.4468 1.6009 36 1 4.3268 0.6750 2.5324 37 1 3.2409 -0.4525 3.3797 38 1 2.4740 3.5299 5.7642 39 1 1.3057 2.9126 7.8669 40 1 -0.0175 0.8083 7.9216 41 1 -0.1421 -0.5910 5.9029 42 1 4.3104 1.6101 -1.1852 43 1 3.8394 2.6056 -2.5999 44 1 4.3559 3.4465 0.2482 45 1 4.5638 4.3800 -1.2599 46 1 5.4208 6.4114 0.6945 47 1 1.3713 3.9138 -2.1750 48 1 0.6521 3.5059 -0.5871 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715049401.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:36 Heat of formation + Delta-G solvation = 56.713961 kcal Electronic energy + Delta-G solvation = -31037.312868 eV Core-core repulsion = 27096.463009 eV Total energy + Delta-G solvation = -3940.849859 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.70332 -39.81182 -37.87809 -35.84833 -35.33075 -32.51699 -32.31227 -31.51852 -30.00006 -29.88007 -28.69988 -27.01564 -24.91235 -24.18630 -23.59577 -23.09850 -22.45855 -20.80531 -19.77193 -18.39041 -18.16049 -16.98121 -16.47073 -16.22329 -15.91497 -15.59338 -15.48675 -14.91173 -14.46868 -14.36811 -13.98607 -13.73391 -13.57301 -13.39197 -13.23257 -13.14515 -12.89868 -12.41388 -12.17064 -11.97258 -11.79140 -11.76858 -11.67170 -11.60227 -11.31456 -10.88849 -10.81667 -10.66681 -10.63629 -10.57144 -9.97032 -9.90634 -9.81781 -9.64571 -9.60667 -9.31880 -8.62882 -8.42411 -8.21442 -7.77209 -6.16276 -5.32489 -2.58314 1.15008 1.25583 2.87121 3.47361 3.60185 3.65088 3.65890 3.72602 3.78949 4.27526 4.77632 4.80917 4.82908 4.99541 5.01877 5.11127 5.16440 5.23994 5.25133 5.34092 5.41845 5.52470 5.65470 5.68590 5.72067 5.76271 5.79408 5.82735 5.86967 5.95099 5.97439 6.12709 6.16854 6.20188 6.28126 6.32231 6.43082 6.59958 6.67598 6.71338 6.83196 7.30132 7.43442 7.84064 7.85961 7.99791 8.04710 8.16569 8.64056 9.18128 9.59247 10.21863 10.88173 11.79764 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009690 B = 0.005549 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.932575 B = 5044.411744 C = 7167.456490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.097 3.903 3 N -0.609 5.609 4 C 0.459 3.541 5 O -0.385 6.385 6 C 0.074 3.926 7 H 0.100 0.900 8 C -0.166 4.166 9 O -0.267 6.267 10 C 0.331 3.669 11 C -0.189 4.189 12 C -0.041 4.041 13 C -0.222 4.222 14 C 0.137 3.863 15 N -0.544 5.544 16 C 0.135 3.865 17 H 0.082 0.918 18 C -0.159 4.159 19 C 0.188 3.812 20 N -0.565 5.565 21 C -0.183 4.183 22 H 0.064 0.936 23 C -0.009 4.009 24 N -0.924 5.924 25 Si 0.899 3.101 26 H -0.294 1.294 27 H -0.296 1.296 28 H -0.286 1.286 29 C 0.131 3.869 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.144 0.856 39 H 0.139 0.861 40 H 0.133 0.867 41 H 0.156 0.844 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.042 0.958 45 H 0.046 0.954 46 H 0.243 0.757 47 H 0.022 0.978 48 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.710 -17.603 6.730 20.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.026 4.026 3 N -0.348 5.348 4 C 0.241 3.759 5 O -0.248 6.248 6 C 0.014 3.986 7 H 0.118 0.882 8 C -0.224 4.224 9 O -0.171 6.171 10 C 0.152 3.848 11 C -0.210 4.210 12 C -0.067 4.067 13 C -0.243 4.243 14 C -0.019 4.019 15 N -0.269 5.269 16 C 0.031 3.969 17 H 0.100 0.900 18 C -0.199 4.199 19 C 0.064 3.936 20 N -0.290 5.290 21 C -0.312 4.312 22 H 0.082 0.918 23 C -0.203 4.203 24 N -0.574 5.574 25 Si 0.731 3.269 26 H -0.222 1.222 27 H -0.223 1.223 28 H -0.212 1.212 29 C 0.003 3.997 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.162 0.838 39 H 0.156 0.844 40 H 0.151 0.849 41 H 0.173 0.827 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.054 0.946 47 H 0.039 0.961 48 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -7.250 -16.984 6.035 19.428 hybrid contribution -0.280 0.865 1.464 1.723 sum -7.531 -16.119 7.499 19.307 Atomic orbital electron populations 1.22218 0.96495 1.01493 1.02601 1.21694 0.94208 0.83862 1.02878 1.47717 1.68361 1.13181 1.05570 1.20273 0.82174 0.89301 0.84128 1.91570 1.37272 1.11940 1.84034 1.22191 1.01300 0.89952 0.85183 0.88219 1.22264 0.99097 0.98150 1.02868 1.86495 1.65933 1.47292 1.17416 1.19999 0.88624 0.89167 0.87001 1.21184 1.05501 1.02464 0.91819 1.21391 0.92839 0.95478 0.96963 1.21905 1.04475 0.97404 1.00481 1.22358 0.94046 0.98309 0.87198 1.67289 1.12554 1.17386 1.29675 1.22283 0.96921 0.93654 0.84014 0.89966 1.23370 0.95033 1.00924 1.00550 1.21125 0.88216 0.88198 0.96091 1.44085 1.01128 1.24808 1.58965 1.18753 0.91881 0.95904 1.24701 0.91824 1.24525 0.95367 0.98925 1.01527 1.69936 0.97106 1.41270 1.49069 0.86266 0.76504 0.82688 0.81396 1.22231 1.22335 1.21223 1.21744 0.93293 0.89093 0.95579 0.92639 0.92289 0.92101 0.90987 0.90108 0.90220 0.91166 0.91654 0.83845 0.84358 0.84882 0.82694 0.92554 0.91913 0.94055 0.93623 0.94606 0.96094 0.94907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 10.24 37.16 0.38 -1.43 16 2 C 0.10 1.13 5.46 -4.05 -0.02 1.11 16 3 N -0.61 -10.01 2.56 -163.67 -0.42 -10.43 16 4 C 0.46 9.19 6.50 -10.99 -0.07 9.12 16 5 O -0.39 -9.95 8.47 -14.20 -0.12 -10.07 16 6 C 0.07 1.26 2.06 -27.88 -0.06 1.20 16 7 H 0.10 1.56 6.16 -51.93 -0.32 1.24 16 8 C -0.17 -2.33 9.09 37.16 0.34 -1.99 16 9 O -0.27 -5.23 9.31 -38.49 -0.36 -5.59 16 10 C 0.33 5.47 7.45 -17.12 -0.13 5.34 16 11 C -0.19 -2.75 10.04 -39.28 -0.39 -3.15 16 12 C -0.04 -0.45 10.17 -39.31 -0.40 -0.85 16 13 C -0.22 -2.16 10.11 -39.43 -0.40 -2.56 16 14 C 0.14 1.48 11.18 -17.57 -0.20 1.29 16 15 N -0.54 -7.75 8.65 -13.33 -0.12 -7.87 16 16 C 0.14 2.39 3.79 -65.78 -0.25 2.14 16 17 H 0.08 1.17 8.00 -51.93 -0.42 0.75 16 18 C -0.16 -3.10 6.51 -24.90 -0.16 -3.26 16 19 C 0.19 4.88 4.25 -3.07 -0.01 4.87 16 20 N -0.56 -15.26 1.74 -170.07 -0.30 -15.55 16 21 C -0.18 -5.52 8.78 -15.06 -0.13 -5.66 16 22 H 0.06 1.91 7.84 -52.48 -0.41 1.50 16 23 C -0.01 -0.27 5.46 -17.43 -0.10 -0.36 16 24 N -0.92 -29.29 10.45 55.49 0.58 -28.71 16 25 Si 0.90 24.28 29.56 -169.99 -5.02 19.25 16 26 H -0.29 -8.04 7.11 56.52 0.40 -7.64 16 27 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 28 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 29 C 0.13 2.86 6.22 -2.52 -0.02 2.85 16 30 H 0.05 0.68 7.87 -51.93 -0.41 0.27 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 34 H 0.08 0.86 4.22 -51.93 -0.22 0.64 16 35 H 0.08 0.94 5.64 -51.93 -0.29 0.64 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.14 2.12 8.06 -52.49 -0.42 1.70 16 39 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 41 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.04 1.22 6.26 -51.93 -0.33 0.89 16 45 H 0.05 1.33 7.02 -51.93 -0.36 0.97 16 46 H 0.24 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 376.16 15.07 5.67 5.67 Total: -1.00 -36.83 376.16 -9.09 -45.92 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -7.39 Total: -1.27 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -1.62 Total: 8.64 kcal Atomic # 7 Polarization: -62.31 SS G_CDS: -0.25 Total: -62.56 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -0.48 Total: -15.65 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -5.02 Total: 19.25 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.83 -9.09 -45.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715049401.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.631 kcal (2) G-P(sol) polarization free energy of solvation -36.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds