Wall clock time and date at job start Tue Mar 31 2020 17:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47134 * 2 1 4 4 C 1.34778 * 120.00332 * 94.01736 * 3 2 1 5 5 O 1.21284 * 120.00018 * 184.38956 * 4 3 2 6 6 C 1.50699 * 119.99766 * 4.11543 * 4 3 2 7 7 H 1.09005 * 109.47099 * 309.13208 * 6 4 3 8 8 C 1.53003 * 109.46997 * 69.13092 * 6 4 3 9 9 O 1.42901 * 109.47159 * 189.13318 * 6 4 3 10 10 C 1.35677 * 116.99761 * 150.00122 * 9 6 4 11 11 C 1.38921 * 119.68359 * 179.73008 * 10 9 6 12 12 C 1.38369 * 119.11252 * 179.70794 * 11 10 9 13 13 C 1.38831 * 118.48499 * 0.55052 * 12 11 10 14 14 C 1.38040 * 119.28821 * 359.73101 * 13 12 11 15 15 N 1.31967 * 120.83616 * 359.97438 * 14 13 12 16 16 C 1.46509 * 119.99976 * 274.01615 * 3 2 1 17 17 H 1.08998 * 110.88524 * 9.38059 * 16 3 2 18 18 C 1.55156 * 111.00314 * 245.49502 * 16 3 2 19 19 C 1.54318 * 102.94480 * 277.42808 * 18 16 3 20 20 N 1.47026 * 107.27299 * 337.80788 * 19 18 16 21 21 C 1.36927 * 125.65219 * 178.98491 * 20 19 18 22 22 H 1.08007 * 119.99997 * 186.13782 * 21 20 19 23 23 C 1.38814 * 119.99975 * 6.13766 * 21 20 19 24 24 N 1.31610 * 119.99834 * 6.27277 * 23 21 20 25 25 Si 1.86801 * 119.99821 * 186.26709 * 23 21 20 26 26 H 1.48497 * 109.46841 * 94.99785 * 25 23 21 27 27 H 1.48505 * 109.47028 * 214.99358 * 25 23 21 28 28 H 1.48500 * 109.47642 * 334.99675 * 25 23 21 29 29 C 1.47432 * 108.70077 * 358.94042 * 20 19 18 30 30 H 1.09002 * 109.47320 * 299.99971 * 1 2 3 31 31 H 1.09004 * 109.47336 * 60.00135 * 1 2 3 32 32 H 1.09000 * 109.47525 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47320 * 240.00029 * 2 1 3 34 34 H 1.08996 * 109.47390 * 120.00145 * 2 1 3 35 35 H 1.08993 * 109.47265 * 306.00424 * 8 6 4 36 36 H 1.08999 * 109.46694 * 66.01034 * 8 6 4 37 37 H 1.09005 * 109.47043 * 186.00315 * 8 6 4 38 38 H 1.08000 * 120.43875 * 359.97438 * 11 10 9 39 39 H 1.08000 * 120.76249 * 180.28185 * 12 11 10 40 40 H 1.08005 * 120.35467 * 179.70937 * 13 12 11 41 41 H 1.08002 * 119.58390 * 179.97438 * 14 13 12 42 42 H 1.08998 * 110.72023 * 35.79478 * 18 16 3 43 43 H 1.09007 * 110.71767 * 158.88567 * 18 16 3 44 44 H 1.09001 * 109.88647 * 97.22384 * 19 18 16 45 45 H 1.09000 * 109.88374 * 218.39711 * 19 18 16 46 46 H 0.97005 * 119.99832 * 179.97438 * 24 23 21 47 47 H 1.08999 * 110.36718 * 265.28730 * 29 20 19 48 48 H 1.09001 * 110.36733 * 142.96291 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3200 1.9893 1.1643 5 8 2.6479 3.1570 1.1714 6 6 2.2440 1.2201 2.4580 7 1 1.2767 0.7226 2.5286 8 6 3.3596 0.1737 2.4954 9 8 2.3981 2.1202 3.5571 10 6 1.7702 1.7924 4.7143 11 6 1.8870 2.6250 5.8202 12 6 1.2368 2.2824 6.9925 13 6 0.4983 1.1072 7.0210 14 6 0.4307 0.3245 5.8859 15 7 1.0572 0.6806 4.7804 16 6 2.1787 2.1014 -1.2657 17 1 1.7419 1.5390 -2.0909 18 6 3.6724 2.4201 -1.5388 19 6 3.9090 3.7019 -0.7127 20 7 2.5983 4.3338 -0.5022 21 6 2.3716 5.4855 0.2028 22 1 1.3599 5.8170 0.3847 23 6 3.4420 6.2271 0.6837 24 7 4.6728 5.8930 0.3587 25 14 3.1354 7.6992 1.7920 26 1 3.2450 7.2806 3.2125 27 1 4.1434 8.7518 1.5070 28 1 1.7742 8.2355 1.5377 29 6 1.5686 3.5226 -1.1770 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.3059 -0.4468 1.6009 36 1 4.3268 0.6750 2.5324 37 1 3.2409 -0.4525 3.3797 38 1 2.4740 3.5299 5.7642 39 1 1.3057 2.9126 7.8669 40 1 -0.0175 0.8083 7.9216 41 1 -0.1421 -0.5910 5.9029 42 1 4.3104 1.6101 -1.1852 43 1 3.8394 2.6056 -2.5999 44 1 4.3559 3.4465 0.2482 45 1 4.5638 4.3800 -1.2599 46 1 5.4208 6.4114 0.6945 47 1 1.3713 3.9138 -2.1750 48 1 0.6521 3.5059 -0.5871 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715049401.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:35 Heat of formation + Delta-G solvation = 31.673534 kcal Electronic energy + Delta-G solvation = -31038.398702 eV Core-core repulsion = 27096.463009 eV Total energy + Delta-G solvation = -3941.935694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.90096 -41.14909 -39.15094 -37.54865 -36.74649 -34.28191 -33.46187 -32.79825 -31.45398 -30.98539 -30.41719 -28.74878 -26.49518 -25.89506 -24.62345 -24.15780 -23.55104 -22.24130 -21.79103 -19.64326 -19.50153 -18.74864 -17.98036 -17.47046 -17.08656 -16.86287 -16.71072 -16.49944 -16.28053 -15.65335 -15.47792 -15.33718 -14.93984 -14.58001 -14.40283 -14.18518 -14.00259 -13.70765 -13.66032 -13.51673 -13.32089 -13.20153 -12.93568 -12.84330 -12.79599 -12.74040 -12.57058 -12.16243 -12.11528 -11.99762 -11.91698 -11.65623 -11.49753 -11.34320 -10.93014 -10.60478 -10.56087 -10.10263 -9.47343 -9.33190 -8.30222 -7.64411 -4.88668 0.19327 0.30932 1.36289 1.42025 1.47460 1.66430 1.99317 2.51842 2.58137 2.81953 3.30094 3.52066 3.57794 3.83732 3.93329 3.98476 4.01069 4.06146 4.09825 4.13436 4.21441 4.22404 4.34896 4.39235 4.49604 4.54646 4.63689 4.71674 4.77218 4.78760 4.84030 4.90885 4.97563 5.05361 5.05865 5.11753 5.12940 5.16064 5.26774 5.42450 5.51155 5.55318 5.88189 5.93068 6.00634 6.27696 6.40618 6.69103 6.85966 7.31388 7.71568 8.02822 8.66311 9.45880 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009690 B = 0.005549 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.932575 B = 5044.411744 C = 7167.456490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.091 3.909 3 N -0.603 5.603 4 C 0.453 3.547 5 O -0.459 6.459 6 C 0.081 3.919 7 H 0.113 0.887 8 C -0.154 4.154 9 O -0.313 6.313 10 C 0.296 3.704 11 C -0.221 4.221 12 C -0.035 4.035 13 C -0.204 4.204 14 C 0.131 3.869 15 N -0.554 5.554 16 C 0.150 3.850 17 H 0.139 0.861 18 C -0.144 4.144 19 C 0.201 3.799 20 N -0.579 5.579 21 C -0.182 4.182 22 H 0.054 0.946 23 C -0.069 4.069 24 N -0.951 5.951 25 Si 0.955 3.045 26 H -0.303 1.303 27 H -0.293 1.293 28 H -0.272 1.272 29 C 0.124 3.876 30 H 0.031 0.969 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.043 0.957 37 H 0.079 0.921 38 H 0.122 0.878 39 H 0.169 0.831 40 H 0.177 0.823 41 H 0.196 0.804 42 H 0.072 0.928 43 H 0.086 0.914 44 H -0.005 1.005 45 H 0.000 1.000 46 H 0.234 0.766 47 H 0.034 0.966 48 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.277 -21.461 7.110 24.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.030 4.030 3 N -0.341 5.341 4 C 0.236 3.764 5 O -0.328 6.328 6 C 0.021 3.979 7 H 0.131 0.869 8 C -0.211 4.211 9 O -0.220 6.220 10 C 0.119 3.881 11 C -0.241 4.241 12 C -0.061 4.061 13 C -0.224 4.224 14 C -0.025 4.025 15 N -0.279 5.279 16 C 0.045 3.955 17 H 0.156 0.844 18 C -0.183 4.183 19 C 0.076 3.924 20 N -0.303 5.303 21 C -0.312 4.312 22 H 0.072 0.928 23 C -0.261 4.261 24 N -0.604 5.604 25 Si 0.786 3.214 26 H -0.232 1.232 27 H -0.220 1.220 28 H -0.197 1.197 29 C -0.003 4.003 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.125 0.875 34 H 0.110 0.890 35 H 0.126 0.874 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.140 0.860 39 H 0.187 0.813 40 H 0.195 0.805 41 H 0.213 0.787 42 H 0.091 0.909 43 H 0.104 0.896 44 H 0.013 0.987 45 H 0.018 0.982 46 H 0.044 0.956 47 H 0.052 0.948 48 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -9.880 -20.915 6.388 23.997 hybrid contribution 0.353 1.933 1.471 2.455 sum -9.527 -18.982 7.858 22.646 Atomic orbital electron populations 1.22167 0.95513 1.03189 1.01354 1.22073 0.94905 0.80900 1.05155 1.47823 1.67083 1.14976 1.04169 1.20977 0.80587 0.88867 0.85931 1.91535 1.40763 1.15057 1.85402 1.22186 1.02791 0.89560 0.83345 0.86934 1.22204 0.96590 0.97439 1.04879 1.86434 1.67401 1.49130 1.18989 1.20189 0.90481 0.90921 0.86518 1.21308 1.07212 1.02299 0.93324 1.21803 0.91578 0.96388 0.96309 1.22411 1.02631 0.95786 1.01538 1.23165 0.93188 0.99587 0.86529 1.67267 1.12712 1.16474 1.31404 1.22247 0.95073 0.92058 0.86081 0.84378 1.23210 0.96829 0.97700 1.00585 1.20757 0.87116 0.90195 0.94283 1.44230 1.02907 1.24486 1.58633 1.18957 0.91311 0.96808 1.24121 0.92785 1.25212 0.95373 1.01947 1.03553 1.70174 0.97508 1.42307 1.50383 0.85358 0.76988 0.79977 0.79037 1.23201 1.21993 1.19696 1.21970 0.91875 0.91430 0.95001 0.94992 0.92474 0.88881 0.87476 0.89026 0.87414 0.93789 0.90255 0.85969 0.81324 0.80534 0.78733 0.90932 0.89563 0.98654 0.98208 0.95644 0.94820 0.96250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 10.24 71.98 0.74 -2.15 16 2 C 0.09 1.74 5.46 86.38 0.47 2.21 16 3 N -0.60 -18.78 2.56 -790.13 -2.02 -20.80 16 4 C 0.45 18.58 6.50 87.66 0.57 19.15 16 5 O -0.46 -25.24 8.47 15.84 0.13 -25.10 16 6 C 0.08 2.81 2.06 29.85 0.06 2.87 16 7 H 0.11 3.49 6.16 -2.38 -0.01 3.48 16 8 C -0.15 -4.26 9.09 71.98 0.65 -3.60 16 9 O -0.31 -13.19 9.31 -71.06 -0.66 -13.86 16 10 C 0.30 10.21 7.45 84.79 0.63 10.84 16 11 C -0.22 -6.77 10.04 22.46 0.23 -6.54 16 12 C -0.04 -0.72 10.17 22.44 0.23 -0.50 16 13 C -0.20 -3.21 10.11 22.36 0.23 -2.98 16 14 C 0.13 2.43 11.18 84.63 0.95 3.38 16 15 N -0.55 -15.25 8.65 -308.96 -2.67 -17.92 16 16 C 0.15 4.91 3.79 46.38 0.18 5.09 16 17 H 0.14 3.14 8.00 -2.39 -0.02 3.12 16 18 C -0.14 -5.43 6.51 31.78 0.21 -5.23 16 19 C 0.20 10.99 4.25 86.73 0.37 11.36 16 20 N -0.58 -32.64 1.74 -691.97 -1.20 -33.84 16 21 C -0.18 -11.53 8.78 84.04 0.74 -10.80 16 22 H 0.05 3.43 7.84 -2.91 -0.02 3.40 16 23 C -0.07 -4.50 5.46 84.86 0.46 -4.04 16 24 N -0.95 -64.43 10.45 21.65 0.23 -64.21 16 25 Si 0.95 52.73 29.56 68.60 2.03 54.76 16 26 H -0.30 -17.02 7.11 99.48 0.71 -16.31 16 27 H -0.29 -15.86 7.11 99.48 0.71 -15.15 16 28 H -0.27 -14.17 7.11 99.48 0.71 -13.46 16 29 C 0.12 5.42 6.22 86.85 0.54 5.95 16 30 H 0.03 0.71 7.87 -2.39 -0.02 0.69 16 31 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.11 1.42 8.10 -2.39 -0.02 1.40 16 34 H 0.09 1.59 4.22 -2.39 -0.01 1.58 16 35 H 0.11 2.27 5.64 -2.39 -0.01 2.26 16 36 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.12 4.08 8.06 -2.91 -0.02 4.06 16 39 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 40 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16 41 H 0.20 1.96 8.06 -2.91 -0.02 1.93 16 42 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.09 2.87 8.14 -2.38 -0.02 2.85 16 44 H 0.00 -0.29 6.26 -2.39 -0.01 -0.31 16 45 H 0.00 -0.01 7.02 -2.39 -0.02 -0.02 16 46 H 0.23 15.56 8.31 -92.70 -0.77 14.79 16 47 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -91.98 376.16 4.03 -87.96 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: 0.95 Total: 8.01 kcal Atomic # 6 Polarization: 17.76 SS G_CDS: 7.24 Total: 25.01 kcal Atomic # 7 Polarization: -131.10 SS G_CDS: -5.67 Total: -136.77 kcal Atomic # 8 Polarization: -38.43 SS G_CDS: -0.53 Total: -38.96 kcal Atomic # 14 Polarization: 52.73 SS G_CDS: 2.03 Total: 54.76 kcal Total: -91.98 4.03 -87.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715049401.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.630 kcal (2) G-P(sol) polarization free energy of solvation -91.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds