Wall clock time and date at job start Tue Mar 31 2020 17:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35918 * 116.99786 * 2 1 4 4 C 1.39140 * 120.47176 * 179.97438 * 3 2 1 5 5 C 1.38539 * 118.36978 * 180.02562 * 4 3 2 6 6 C 1.38253 * 119.22483 * 0.02562 * 5 4 3 7 7 C 1.50694 * 119.56017 * 179.97438 * 6 5 4 8 8 C 1.50691 * 109.47560 * 124.99477 * 7 6 5 9 9 O 1.21280 * 120.00210 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00339 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99813 * 0.02562 * 10 8 7 12 12 C 1.46495 * 120.00350 * 180.02562 * 10 8 7 13 13 C 1.53039 * 109.46476 * 240.00071 * 12 10 8 14 14 C 1.53192 * 109.31624 * 178.61195 * 13 12 10 15 15 N 1.46925 * 108.89163 * 54.56131 * 14 13 12 16 16 C 1.36940 * 120.62821 * 126.46045 * 15 14 13 17 17 H 1.08000 * 119.99751 * 331.92858 * 16 15 14 18 18 C 1.38810 * 120.00078 * 151.92771 * 16 15 14 19 19 N 1.31619 * 119.99689 * 343.17980 * 18 16 15 20 20 Si 1.86795 * 119.99988 * 163.18147 * 18 16 15 21 21 H 1.48509 * 109.47304 * 59.99932 * 20 18 16 22 22 H 1.48501 * 109.47440 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47535 * 299.99868 * 20 18 16 24 24 C 1.46954 * 118.71946 * 306.64559 * 15 14 13 25 25 C 1.53044 * 109.46278 * 119.92820 * 12 10 8 26 26 N 1.31849 * 120.88178 * 0.25388 * 6 5 4 27 27 C 1.31841 * 121.78299 * 359.46908 * 26 6 5 28 28 H 1.09005 * 109.47080 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47701 * 299.99584 * 1 2 3 30 30 H 1.09002 * 109.47533 * 60.00312 * 1 2 3 31 31 H 1.07995 * 120.81244 * 0.02562 * 4 3 2 32 32 H 1.08005 * 120.38827 * 180.02562 * 5 4 3 33 33 H 1.09010 * 109.46972 * 4.99307 * 7 6 5 34 34 H 1.08998 * 109.46919 * 245.00205 * 7 6 5 35 35 H 1.08998 * 109.46749 * 269.99919 * 11 10 8 36 36 H 1.08997 * 109.46972 * 29.99702 * 11 10 8 37 37 H 1.08997 * 109.46923 * 150.00230 * 11 10 8 38 38 H 1.09009 * 109.46016 * 359.97438 * 12 10 8 39 39 H 1.09005 * 109.49298 * 58.66180 * 13 12 10 40 40 H 1.08998 * 109.49763 * 298.56780 * 13 12 10 41 41 H 1.08997 * 109.58838 * 174.42439 * 14 13 12 42 42 H 1.09002 * 109.58672 * 294.71002 * 14 13 12 43 43 H 0.97000 * 119.99637 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.47125 * 293.56762 * 24 15 14 45 45 H 1.09000 * 109.71403 * 173.28134 * 24 15 14 46 46 H 1.09000 * 109.50000 * 301.34377 * 25 12 10 47 47 H 1.09003 * 109.49095 * 61.43586 * 25 12 10 48 48 H 1.08001 * 119.65778 * 180.26870 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2111 0.0000 4 6 3.4348 1.2954 0.0005 5 6 4.0180 2.5520 0.0011 6 6 3.2077 3.6722 0.0016 7 6 3.8341 5.0428 0.0027 8 6 3.3023 5.8393 -1.1607 9 8 2.4937 5.3430 -1.9163 10 7 3.7243 7.1035 -1.3612 11 6 4.7005 7.7032 -0.4482 12 6 3.2068 7.8779 -2.4919 13 6 4.3660 8.2842 -3.4048 14 6 3.8173 9.0639 -4.6039 15 7 3.0139 10.1910 -4.1111 16 6 3.2708 11.4681 -4.5332 17 1 4.2692 11.7457 -4.8374 18 6 2.2480 12.4059 -4.5701 19 7 0.9928 12.0126 -4.5259 20 14 2.6533 14.2259 -4.6824 21 1 3.4233 14.4859 -5.9253 22 1 1.3941 15.0129 -4.7071 23 1 3.4645 14.6261 -3.5047 24 6 1.9321 9.9217 -3.1536 25 6 2.5018 9.1324 -1.9707 26 7 1.8943 3.5574 0.0066 27 6 1.3001 2.3805 0.0009 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 4.0432 0.4031 0.0005 32 1 5.0931 2.6554 0.0011 33 1 4.9164 4.9478 -0.0864 34 1 3.5898 5.5531 0.9344 35 1 4.1767 8.2011 0.3678 36 1 5.3461 6.9238 -0.0435 37 1 5.3049 8.4310 -0.9895 38 1 2.4976 7.2702 -3.0541 39 1 4.8819 7.3909 -3.7569 40 1 5.0628 8.9126 -2.8502 41 1 4.6452 9.4403 -5.2047 42 1 3.1933 8.4085 -5.2114 43 1 0.2781 12.6679 -4.5520 44 1 1.1523 9.3370 -3.6414 45 1 1.5139 10.8631 -2.7971 46 1 1.6911 8.8429 -1.3022 47 1 3.2163 9.7528 -1.4296 48 1 0.2214 2.3264 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005884708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:53 Heat of formation + Delta-G solvation = -7.010797 kcal Electronic energy + Delta-G solvation = -28635.813349 eV Core-core repulsion = 24692.200177 eV Total energy + Delta-G solvation = -3943.613172 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.96657 -39.80341 -38.42420 -37.24364 -35.00015 -32.90672 -32.62286 -32.10950 -30.21549 -29.62557 -28.34902 -27.37207 -26.77573 -24.93348 -23.66080 -22.72953 -22.14275 -21.64309 -19.30088 -18.75531 -18.41901 -17.43401 -16.86177 -16.74424 -16.22948 -16.07852 -15.52900 -15.38446 -14.77164 -14.50200 -14.43923 -14.02823 -13.70532 -13.52274 -13.27726 -13.10953 -13.06704 -12.93450 -12.59042 -12.47732 -12.37121 -12.25165 -12.07820 -11.95691 -11.63099 -11.43365 -11.07670 -10.76823 -10.70417 -10.32051 -10.18703 -10.05124 -9.93930 -9.72045 -9.62580 -9.55924 -9.35586 -8.56625 -8.49482 -8.21710 -6.65750 -5.76737 -3.19557 0.89070 1.09511 2.85078 2.88233 3.18476 3.39480 3.45220 3.46093 3.63991 4.10765 4.40884 4.43832 4.50977 4.60975 4.74234 4.79866 4.87076 5.03947 5.13339 5.14269 5.24723 5.27021 5.36363 5.40311 5.43937 5.47425 5.55498 5.69631 5.72203 5.78057 5.84952 5.92935 6.12214 6.24237 6.29876 6.38681 6.53502 6.64165 6.67438 6.81090 6.89629 6.96743 7.01712 7.38569 7.63196 7.71930 7.81024 7.86671 8.45386 8.47374 9.23003 9.86376 10.43771 11.32043 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025850 B = 0.002214 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.912934 B =12641.287147 C =13146.714271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.314 6.314 3 C 0.070 3.930 4 C -0.109 4.109 5 C -0.127 4.127 6 C 0.109 3.891 7 C -0.086 4.086 8 C 0.516 3.484 9 O -0.526 6.526 10 N -0.612 5.612 11 C 0.076 3.924 12 C 0.147 3.853 13 C -0.138 4.138 14 C 0.148 3.852 15 N -0.592 5.592 16 C -0.253 4.253 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.902 5.902 20 Si 0.903 3.097 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.174 3.826 25 C -0.144 4.144 26 N -0.419 5.419 27 C 0.027 3.973 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.019 0.981 43 H 0.255 0.745 44 H 0.020 0.980 45 H 0.090 0.910 46 H 0.050 0.950 47 H 0.056 0.944 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.956 -21.057 13.775 25.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.226 6.226 3 C 0.022 3.978 4 C -0.135 4.135 5 C -0.147 4.147 6 C -0.030 4.030 7 C -0.127 4.127 8 C 0.302 3.698 9 O -0.401 6.401 10 N -0.345 5.345 11 C -0.067 4.067 12 C 0.045 3.955 13 C -0.178 4.178 14 C 0.021 3.979 15 N -0.315 5.315 16 C -0.383 4.383 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.546 5.546 20 Si 0.733 3.267 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.211 1.211 24 C 0.047 3.953 25 C -0.184 4.184 26 N -0.127 5.127 27 C -0.132 4.132 28 H 0.121 0.879 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.037 0.963 43 H 0.065 0.935 44 H 0.038 0.962 45 H 0.108 0.892 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.925 -20.660 13.347 25.084 hybrid contribution 0.438 0.351 0.021 0.561 sum 5.362 -20.309 13.367 24.898 Atomic orbital electron populations 1.23127 0.77927 1.04281 1.01816 1.86053 1.21733 1.26161 1.88701 1.20100 0.93312 0.85750 0.98613 1.20839 0.91651 0.98675 1.02385 1.21782 1.01207 0.91651 1.00025 1.20503 0.89288 0.94359 0.98858 1.20587 1.00792 0.91762 0.99545 1.20210 0.81856 0.81673 0.86047 1.90716 1.32992 1.69570 1.46868 1.48133 1.43764 1.13207 1.29399 1.21752 0.92153 0.99044 0.93780 1.21147 0.96055 0.92402 0.85908 1.22367 0.97459 0.99331 0.98624 1.20855 0.94678 0.89789 0.92603 1.44074 1.36984 1.02426 1.48018 1.19127 0.93254 0.85956 1.39938 0.91733 1.25065 0.95154 0.98686 1.00765 1.70026 0.98005 1.32774 1.53836 0.86366 0.77008 0.85262 0.78084 1.20898 1.21660 1.21061 1.20754 0.89127 0.98575 0.86806 1.22535 0.99386 0.95862 1.00619 1.67311 1.11471 1.26245 1.07711 1.22895 1.00532 0.86918 1.02832 0.87944 0.92362 0.92208 0.84048 0.84067 0.87581 0.87340 0.92682 0.91648 0.90514 0.88824 0.93029 0.92096 0.92540 0.96288 0.93547 0.96223 0.89233 0.93098 0.92511 0.82615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.82 101.05 0.99 1.14 16 2 O -0.31 -3.03 10.51 -19.48 -0.20 -3.23 16 3 C 0.07 0.76 6.71 -39.08 -0.26 0.49 16 4 C -0.11 -1.06 10.13 -39.14 -0.40 -1.46 16 5 C -0.13 -1.22 9.70 -39.46 -0.38 -1.61 16 6 C 0.11 1.34 5.76 -82.58 -0.48 0.87 16 7 C -0.09 -0.93 4.65 -29.04 -0.14 -1.06 16 8 C 0.52 7.97 7.61 -10.99 -0.08 7.88 16 9 O -0.53 -10.50 14.67 5.56 0.08 -10.42 16 10 N -0.61 -9.07 2.76 -173.89 -0.48 -9.55 16 11 C 0.08 0.81 9.33 59.85 0.56 1.37 16 12 C 0.15 2.67 2.48 -67.89 -0.17 2.50 16 13 C -0.14 -2.44 5.31 -26.61 -0.14 -2.58 16 14 C 0.15 3.16 6.51 -3.71 -0.02 3.14 16 15 N -0.59 -14.97 3.00 -172.30 -0.52 -15.49 16 16 C -0.25 -6.94 9.58 -15.06 -0.14 -7.09 16 17 H 0.06 1.73 7.88 -52.49 -0.41 1.31 16 18 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 19 N -0.90 -26.45 11.20 55.49 0.62 -25.83 16 20 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 C 0.17 4.24 5.30 -3.70 -0.02 4.22 16 25 C -0.14 -2.84 5.34 -26.61 -0.14 -2.98 16 26 N -0.42 -6.06 9.23 -9.35 -0.09 -6.14 16 27 C 0.03 0.33 10.22 -17.38 -0.18 0.15 16 28 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.30 7.68 -51.93 -0.40 -0.10 16 30 H 0.06 0.35 7.68 -51.93 -0.40 -0.04 16 31 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.14 0.89 7.95 -52.48 -0.42 0.47 16 33 H 0.11 0.77 7.13 -51.92 -0.37 0.40 16 34 H 0.11 0.99 8.11 -51.93 -0.42 0.57 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.48 6.44 -51.93 -0.33 0.15 16 37 H 0.08 0.85 6.45 -51.93 -0.34 0.52 16 38 H 0.09 1.98 6.90 -51.92 -0.36 1.62 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 1.04 6.72 -51.93 -0.35 0.69 16 41 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.06 1.09 7.72 -51.93 -0.40 0.69 16 48 H 0.16 1.54 6.32 -52.49 -0.33 1.21 16 LS Contribution 381.86 15.07 5.75 5.75 Total: -1.00 -35.24 381.86 -8.30 -43.54 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -7.35 Total: -0.25 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -1.09 Total: 4.97 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: -0.46 Total: -57.01 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.12 Total: -13.65 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.24 -8.30 -43.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005884708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.528 kcal (2) G-P(sol) polarization free energy of solvation -35.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds