Wall clock time and date at job start Tue Mar 31 2020 17:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35918 * 116.99786 * 2 1 4 4 C 1.39140 * 120.47176 * 179.97438 * 3 2 1 5 5 C 1.38539 * 118.36978 * 180.02562 * 4 3 2 6 6 C 1.38253 * 119.22483 * 0.02562 * 5 4 3 7 7 C 1.50694 * 119.56017 * 179.97438 * 6 5 4 8 8 C 1.50691 * 109.47560 * 124.99477 * 7 6 5 9 9 O 1.21280 * 120.00210 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00339 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99813 * 0.02562 * 10 8 7 12 12 C 1.46495 * 120.00350 * 180.02562 * 10 8 7 13 13 C 1.53039 * 109.46476 * 240.00071 * 12 10 8 14 14 C 1.53192 * 109.31624 * 178.61195 * 13 12 10 15 15 N 1.46925 * 108.89163 * 54.56131 * 14 13 12 16 16 C 1.36940 * 120.62821 * 126.46045 * 15 14 13 17 17 H 1.08000 * 119.99751 * 331.92858 * 16 15 14 18 18 C 1.38810 * 120.00078 * 151.92771 * 16 15 14 19 19 N 1.31619 * 119.99689 * 343.17980 * 18 16 15 20 20 Si 1.86795 * 119.99988 * 163.18147 * 18 16 15 21 21 H 1.48509 * 109.47304 * 59.99932 * 20 18 16 22 22 H 1.48501 * 109.47440 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47535 * 299.99868 * 20 18 16 24 24 C 1.46954 * 118.71946 * 306.64559 * 15 14 13 25 25 C 1.53044 * 109.46278 * 119.92820 * 12 10 8 26 26 N 1.31849 * 120.88178 * 0.25388 * 6 5 4 27 27 C 1.31841 * 121.78299 * 359.46908 * 26 6 5 28 28 H 1.09005 * 109.47080 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47701 * 299.99584 * 1 2 3 30 30 H 1.09002 * 109.47533 * 60.00312 * 1 2 3 31 31 H 1.07995 * 120.81244 * 0.02562 * 4 3 2 32 32 H 1.08005 * 120.38827 * 180.02562 * 5 4 3 33 33 H 1.09010 * 109.46972 * 4.99307 * 7 6 5 34 34 H 1.08998 * 109.46919 * 245.00205 * 7 6 5 35 35 H 1.08998 * 109.46749 * 269.99919 * 11 10 8 36 36 H 1.08997 * 109.46972 * 29.99702 * 11 10 8 37 37 H 1.08997 * 109.46923 * 150.00230 * 11 10 8 38 38 H 1.09009 * 109.46016 * 359.97438 * 12 10 8 39 39 H 1.09005 * 109.49298 * 58.66180 * 13 12 10 40 40 H 1.08998 * 109.49763 * 298.56780 * 13 12 10 41 41 H 1.08997 * 109.58838 * 174.42439 * 14 13 12 42 42 H 1.09002 * 109.58672 * 294.71002 * 14 13 12 43 43 H 0.97000 * 119.99637 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.47125 * 293.56762 * 24 15 14 45 45 H 1.09000 * 109.71403 * 173.28134 * 24 15 14 46 46 H 1.09000 * 109.50000 * 301.34377 * 25 12 10 47 47 H 1.09003 * 109.49095 * 61.43586 * 25 12 10 48 48 H 1.08001 * 119.65778 * 180.26870 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2111 0.0000 4 6 3.4348 1.2954 0.0005 5 6 4.0180 2.5520 0.0011 6 6 3.2077 3.6722 0.0016 7 6 3.8341 5.0428 0.0027 8 6 3.3023 5.8393 -1.1607 9 8 2.4937 5.3430 -1.9163 10 7 3.7243 7.1035 -1.3612 11 6 4.7005 7.7032 -0.4482 12 6 3.2068 7.8779 -2.4919 13 6 4.3660 8.2842 -3.4048 14 6 3.8173 9.0639 -4.6039 15 7 3.0139 10.1910 -4.1111 16 6 3.2708 11.4681 -4.5332 17 1 4.2692 11.7457 -4.8374 18 6 2.2480 12.4059 -4.5701 19 7 0.9928 12.0126 -4.5259 20 14 2.6533 14.2259 -4.6824 21 1 3.4233 14.4859 -5.9253 22 1 1.3941 15.0129 -4.7071 23 1 3.4645 14.6261 -3.5047 24 6 1.9321 9.9217 -3.1536 25 6 2.5018 9.1324 -1.9707 26 7 1.8943 3.5574 0.0066 27 6 1.3001 2.3805 0.0009 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 4.0432 0.4031 0.0005 32 1 5.0931 2.6554 0.0011 33 1 4.9164 4.9478 -0.0864 34 1 3.5898 5.5531 0.9344 35 1 4.1767 8.2011 0.3678 36 1 5.3461 6.9238 -0.0435 37 1 5.3049 8.4310 -0.9895 38 1 2.4976 7.2702 -3.0541 39 1 4.8819 7.3909 -3.7569 40 1 5.0628 8.9126 -2.8502 41 1 4.6452 9.4403 -5.2047 42 1 3.1933 8.4085 -5.2114 43 1 0.2781 12.6679 -4.5520 44 1 1.1523 9.3370 -3.6414 45 1 1.5139 10.8631 -2.7971 46 1 1.6911 8.8429 -1.3022 47 1 3.2163 9.7528 -1.4296 48 1 0.2214 2.3264 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005884708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:53 Heat of formation + Delta-G solvation = -30.435539 kcal Electronic energy + Delta-G solvation = -28636.829122 eV Core-core repulsion = 24692.200177 eV Total energy + Delta-G solvation = -3944.628945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.78182 -40.96008 -39.33716 -38.70718 -36.47860 -34.40372 -33.38974 -33.33939 -31.90571 -31.36738 -29.13354 -28.13994 -27.83449 -26.69817 -24.52993 -23.93630 -23.85135 -22.92724 -20.84729 -20.04661 -19.12042 -18.75068 -18.27481 -17.80266 -17.30699 -16.86512 -16.79819 -16.44949 -16.42285 -15.63643 -15.39005 -15.24655 -15.07821 -14.89844 -14.74243 -14.34995 -14.16761 -14.02047 -13.93556 -13.80781 -13.32400 -13.17441 -13.01028 -12.94461 -12.87766 -12.74090 -12.56472 -12.52551 -12.31840 -12.09895 -12.00536 -11.87985 -11.46220 -11.31419 -10.78995 -10.62571 -10.56099 -10.31578 -9.50815 -9.34726 -8.72330 -7.87763 -5.34641 0.11799 0.32641 1.48240 1.50652 1.57811 1.75189 2.07049 2.23744 2.51798 2.80461 3.27992 3.33201 3.62989 3.66325 3.70047 3.75070 3.96017 4.05430 4.09601 4.30567 4.32054 4.33256 4.38614 4.40342 4.45917 4.52807 4.58426 4.64191 4.67658 4.71929 4.74839 4.78821 4.86556 4.96916 5.02467 5.05926 5.08676 5.12068 5.15452 5.29417 5.44996 5.52924 5.63115 5.66619 5.69304 6.20362 6.37772 6.55340 7.06492 7.12624 7.31783 7.82806 8.36775 9.19529 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025850 B = 0.002214 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.912934 B =12641.287147 C =13146.714271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.065 3.935 4 C -0.115 4.115 5 C -0.116 4.116 6 C 0.082 3.918 7 C -0.075 4.075 8 C 0.508 3.492 9 O -0.582 6.582 10 N -0.610 5.610 11 C 0.067 3.933 12 C 0.156 3.844 13 C -0.119 4.119 14 C 0.142 3.858 15 N -0.608 5.608 16 C -0.262 4.262 17 H 0.073 0.927 18 C -0.055 4.055 19 N -0.940 5.940 20 Si 0.972 3.028 21 H -0.274 1.274 22 H -0.297 1.297 23 H -0.274 1.274 24 C 0.182 3.818 25 C -0.125 4.125 26 N -0.463 5.463 27 C 0.004 3.996 28 H 0.127 0.873 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.167 0.833 32 H 0.182 0.818 33 H 0.152 0.848 34 H 0.127 0.873 35 H 0.063 0.937 36 H 0.109 0.891 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.002 0.998 43 H 0.250 0.750 44 H -0.016 1.016 45 H 0.059 0.941 46 H 0.050 0.950 47 H 0.070 0.930 48 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.423 -21.950 15.613 28.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.236 6.236 3 C 0.017 3.983 4 C -0.142 4.142 5 C -0.135 4.135 6 C -0.057 4.057 7 C -0.115 4.115 8 C 0.297 3.703 9 O -0.461 6.461 10 N -0.342 5.342 11 C -0.074 4.074 12 C 0.052 3.948 13 C -0.159 4.159 14 C 0.016 3.984 15 N -0.332 5.332 16 C -0.392 4.392 17 H 0.091 0.909 18 C -0.250 4.250 19 N -0.586 5.586 20 Si 0.800 3.200 21 H -0.200 1.200 22 H -0.224 1.224 23 H -0.199 1.199 24 C 0.055 3.945 25 C -0.165 4.165 26 N -0.172 5.172 27 C -0.155 4.155 28 H 0.145 0.855 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.185 0.815 32 H 0.199 0.801 33 H 0.170 0.830 34 H 0.145 0.855 35 H 0.081 0.919 36 H 0.127 0.873 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.020 0.980 43 H 0.059 0.941 44 H 0.002 0.998 45 H 0.078 0.922 46 H 0.069 0.931 47 H 0.088 0.912 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 8.438 -21.570 15.217 27.713 hybrid contribution -0.687 0.531 -0.591 1.050 sum 7.751 -21.039 14.626 26.770 Atomic orbital electron populations 1.23376 0.76391 1.05980 1.02109 1.86040 1.23404 1.25645 1.88504 1.20268 0.94102 0.85696 0.98189 1.21275 0.91407 0.99927 1.01544 1.22179 1.02922 0.90557 0.97875 1.20934 0.89069 0.95968 0.99761 1.20684 1.02946 0.90242 0.97619 1.21126 0.80901 0.81645 0.86595 1.90700 1.35499 1.70761 1.49143 1.48105 1.44255 1.12999 1.28861 1.22098 0.91726 1.00520 0.93053 1.20688 0.95623 0.91268 0.87195 1.22141 0.97158 0.99723 0.96855 1.21014 0.94163 0.88873 0.94331 1.44326 1.37277 1.03007 1.48552 1.19523 0.93557 0.86986 1.39124 0.90934 1.25908 0.94952 1.03030 1.01077 1.70211 0.98966 1.33849 1.55539 0.85272 0.76464 0.79771 0.78511 1.20002 1.22370 1.19925 1.20498 0.88698 0.97134 0.88151 1.22247 0.99621 0.96240 0.98392 1.67247 1.13245 1.27525 1.09196 1.23037 1.01149 0.87206 1.04075 0.85520 0.91574 0.92482 0.81533 0.80073 0.83024 0.85474 0.91883 0.87269 0.90575 0.92578 0.90957 0.90420 0.91658 0.97989 0.94131 0.99802 0.92237 0.93081 0.91155 0.82163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.82 113.37 1.11 1.30 16 2 O -0.32 -5.98 10.51 -92.63 -0.97 -6.95 16 3 C 0.07 1.37 6.71 22.60 0.15 1.52 16 4 C -0.12 -1.98 10.13 22.56 0.23 -1.75 16 5 C -0.12 -1.87 9.70 22.35 0.22 -1.65 16 6 C 0.08 1.86 5.76 42.56 0.24 2.11 16 7 C -0.08 -1.36 4.65 29.10 0.14 -1.22 16 8 C 0.51 14.94 7.61 87.65 0.67 15.61 16 9 O -0.58 -23.69 14.67 -3.03 -0.04 -23.73 16 10 N -0.61 -16.80 2.76 -822.45 -2.27 -19.07 16 11 C 0.07 1.16 9.33 127.77 1.19 2.35 16 12 C 0.16 5.65 2.48 45.02 0.11 5.76 16 13 C -0.12 -4.04 5.31 30.67 0.16 -3.87 16 14 C 0.14 6.11 6.51 86.36 0.56 6.67 16 15 N -0.61 -31.36 3.00 -699.03 -2.10 -33.46 16 16 C -0.26 -14.47 9.58 84.03 0.81 -13.66 16 17 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 18 C -0.05 -3.09 4.92 84.86 0.42 -2.67 16 19 N -0.94 -57.19 11.20 21.65 0.24 -56.95 16 20 Si 0.97 44.97 29.59 68.60 2.03 47.00 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 24 C 0.18 9.28 5.30 86.36 0.46 9.74 16 25 C -0.13 -4.98 5.34 30.67 0.16 -4.81 16 26 N -0.46 -13.46 9.23 -183.50 -1.69 -15.15 16 27 C 0.00 0.09 10.22 84.80 0.87 0.95 16 28 H 0.13 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.07 0.66 7.68 -2.39 -0.02 0.64 16 30 H 0.06 0.70 7.68 -2.39 -0.02 0.68 16 31 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 32 H 0.18 1.31 7.95 -2.91 -0.02 1.28 16 33 H 0.15 1.28 7.13 -2.38 -0.02 1.26 16 34 H 0.13 1.83 8.11 -2.39 -0.02 1.81 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.11 0.94 6.44 -2.39 -0.02 0.93 16 37 H 0.08 1.36 6.45 -2.39 -0.02 1.34 16 38 H 0.06 2.48 6.90 -2.38 -0.02 2.46 16 39 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 40 H 0.08 2.42 6.72 -2.39 -0.02 2.40 16 41 H 0.06 2.65 7.93 -2.39 -0.02 2.63 16 42 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 44 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 45 H 0.06 3.38 6.07 -2.39 -0.01 3.36 16 46 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.07 2.61 7.72 -2.39 -0.02 2.59 16 48 H 0.16 3.42 6.32 -2.91 -0.02 3.40 16 Total: -1.00 -82.21 381.86 3.65 -78.56 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.96 Total: 13.39 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 7.50 Total: 16.37 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -5.82 Total: -124.63 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -1.02 Total: -30.68 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -82.21 3.65 -78.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005884708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.127 kcal (2) G-P(sol) polarization free energy of solvation -82.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds