Wall clock time and date at job start Tue Mar 31 2020 17:25:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42904 * 1
3 3 C 1.36007 * 117.00211 * 2 1
4 4 C 1.38497 * 120.08239 * 359.96749 * 3 2 1
5 5 C 1.38283 * 120.01977 * 180.02562 * 4 3 2
6 6 C 1.38257 * 120.18141 * 359.97438 * 5 4 3
7 7 C 1.38221 * 120.15609 * 359.71722 * 6 5 4
8 8 C 1.38722 * 119.98305 * 0.57845 * 7 6 5
9 9 N 1.39963 * 120.09425 * 179.69830 * 8 7 6
10 10 C 1.46950 * 111.00211 * 246.25455 * 9 8 7
11 11 C 1.53047 * 109.36744 * 183.18413 * 10 9 8
12 12 N 1.46953 * 109.36528 * 301.60246 * 11 10 9
13 13 C 1.46902 * 110.99984 * 183.18765 * 12 11 10
14 14 C 1.50705 * 109.47144 * 169.99814 * 13 12 11
15 15 O 1.21282 * 119.99689 * 359.97438 * 14 13 12
16 16 N 1.34776 * 120.00071 * 179.97438 * 14 13 12
17 17 C 1.46498 * 119.99995 * 179.97438 * 16 14 13
18 18 C 1.50705 * 109.47162 * 179.72437 * 17 16 14
19 19 H 1.07998 * 120.00025 * 359.97438 * 18 17 16
20 20 C 1.37873 * 119.99979 * 180.02562 * 18 17 16
21 21 N 1.31514 * 120.00215 * 359.97438 * 20 18 17
22 22 Si 1.86801 * 120.00021 * 180.02562 * 20 18 17
23 23 H 1.48497 * 109.47236 * 59.99325 * 22 20 18
24 24 H 1.48494 * 109.46933 * 179.97438 * 22 20 18
25 25 H 1.48498 * 109.46717 * 299.99737 * 22 20 18
26 26 C 1.46959 * 110.88536 * 59.31655 * 12 11 10
27 27 C 1.46963 * 110.99766 * 10.05389 * 9 8 7
28 28 H 1.08994 * 109.47268 * 180.02562 * 1 2 3
29 29 H 1.08997 * 109.46859 * 300.00673 * 1 2 3
30 30 H 1.09005 * 109.46507 * 60.00329 * 1 2 3
31 31 H 1.08006 * 119.99166 * 0.03504 * 4 3 2
32 32 H 1.08001 * 119.91040 * 179.97438 * 5 4 3
33 33 H 1.08000 * 119.91880 * 179.97438 * 6 5 4
34 34 H 1.08007 * 120.00953 * 180.29771 * 7 6 5
35 35 H 1.08998 * 109.48867 * 63.21694 * 10 9 8
36 36 H 1.09000 * 109.49137 * 303.15367 * 10 9 8
37 37 H 1.08998 * 109.49320 * 181.63100 * 11 10 9
38 38 H 1.09002 * 109.50652 * 61.57526 * 11 10 9
39 39 H 1.08994 * 109.47307 * 49.99579 * 13 12 11
40 40 H 1.09000 * 109.47079 * 289.99342 * 13 12 11
41 41 H 0.96995 * 119.99923 * 359.72265 * 16 14 13
42 42 H 1.09000 * 109.47307 * 299.72811 * 17 16 14
43 43 H 1.09000 * 109.47094 * 59.72716 * 17 16 14
44 44 H 0.97000 * 120.00207 * 180.02562 * 21 20 18
45 45 H 1.09004 * 109.48595 * 60.64440 * 26 12 11
46 46 H 1.08996 * 109.49076 * 180.71579 * 26 12 11
47 47 H 1.09006 * 109.48730 * 296.78109 * 27 9 8
48 48 H 1.09006 * 109.48939 * 56.81868 * 27 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0465 1.2118 0.0000
4 6 1.2939 2.3745 -0.0007
5 6 1.9231 3.6059 -0.0012
6 6 3.3037 3.6810 -0.0005
7 6 4.0620 2.5254 0.0066
8 6 3.4378 1.2866 0.0009
9 7 4.2034 0.1149 0.0017
10 6 4.0348 -0.6253 -1.2565
11 6 4.8232 -1.9351 -1.1844
12 7 6.2410 -1.6375 -0.9377
13 6 7.0446 -2.8672 -0.9369
14 6 8.5088 -2.5104 -0.9281
15 8 8.8492 -1.3463 -0.9235
16 7 9.4399 -3.4848 -0.9254
17 6 10.8632 -3.1380 -0.9174
18 6 11.6876 -4.3995 -0.9090
19 1 11.2001 -5.3632 -0.9091
20 6 13.0642 -4.3234 -0.9001
21 7 13.6579 -3.1499 -0.8994
22 14 14.0861 -5.8870 -0.8904
23 1 13.7788 -6.6868 -2.1033
24 1 15.5288 -5.5354 -0.8822
25 1 13.7629 -6.6819 0.3216
26 6 6.4097 -0.8972 0.3206
27 6 5.6213 0.4126 0.2484
28 1 -0.3633 -1.0276 0.0005
29 1 -0.3633 0.5139 0.8899
30 1 -0.3632 0.5138 -0.8901
31 1 0.2153 2.3194 -0.0006
32 1 1.3345 4.5114 -0.0022
33 1 3.7906 4.6450 -0.0014
34 1 5.1403 2.5869 0.0119
35 1 4.4059 -0.0227 -2.0854
36 1 2.9783 -0.8448 -1.4105
37 1 4.7231 -2.4723 -2.1275
38 1 4.4342 -2.5498 -0.3726
39 1 6.8180 -3.4499 -1.8297
40 1 6.8086 -3.4549 -0.0498
41 1 9.1675 -4.4158 -0.9250
42 1 11.1001 -2.5550 -1.8074
43 1 11.0890 -2.5505 -0.0275
44 1 14.6264 -3.0963 -0.8935
45 1 6.0385 -1.4999 1.1496
46 1 7.4662 -0.6777 0.4745
47 1 6.0104 1.0270 -0.5636
48 1 5.7214 0.9502 1.1913
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000027270283.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:25:33
Heat of formation + Delta-G solvation = -20.691847 kcal
Electronic energy + Delta-G solvation = -28377.069928 eV
Core-core repulsion = 24432.863502 eV
Total energy + Delta-G solvation = -3944.206427 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 333.184 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-40.88238 -39.44142 -38.39705 -37.36186 -35.25468 -34.08185 -32.32060 -31.24215
-30.63626 -30.20210 -28.49040 -27.49111 -26.70711 -24.55849 -24.02707 -22.38438
-21.90748 -21.82504 -19.79330 -19.61004 -18.47172 -17.11348 -16.96126 -16.43593
-15.99756 -15.80136 -15.52875 -15.32511 -15.06837 -14.85944 -14.75681 -14.36157
-14.34481 -14.14189 -13.94662 -13.64703 -13.37261 -12.77244 -12.64756 -12.41642
-12.25859 -12.01655 -11.89442 -11.81649 -11.52959 -11.35949 -11.34656 -11.18513
-11.01689 -10.92894 -10.86626 -10.72256 -10.29824 -9.69713 -9.39902 -8.98498
-8.78014 -8.71599 -8.19090 -7.83393 -7.80543 -6.15542 -4.22512 1.07823
1.22268 3.02892 3.25807 3.30572 3.32017 3.40540 3.43716 3.67783
3.72463 4.26924 4.44322 4.55827 4.66617 4.75324 4.83040 4.84773
4.97727 5.03668 5.07472 5.17558 5.20275 5.22589 5.29187 5.30696
5.35888 5.47980 5.51386 5.54947 5.57958 5.63177 5.75865 5.82353
5.96590 6.04375 6.06714 6.15230 6.29921 6.48932 6.80039 6.85005
7.01173 7.15159 7.33714 7.35795 7.47318 7.53855 7.68973 7.98603
8.65714 8.80424 9.14788 9.44246 10.94556
Molecular weight = 333.18amu
Principal moments of inertia in cm(-1)
A = 0.029934 B = 0.001985 C = 0.001885
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 935.173285 B =14103.508185 C =14849.217333
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.305 6.305
3 C 0.114 3.886
4 C -0.192 4.192
5 C -0.107 4.107
6 C -0.132 4.132
7 C -0.132 4.132
8 C 0.084 3.916
9 N -0.484 5.484
10 C 0.066 3.934
11 C 0.057 3.943
12 N -0.521 5.521
13 C 0.036 3.964
14 C 0.499 3.501
15 O -0.540 6.540
16 N -0.715 5.715
17 C 0.252 3.748
18 C -0.544 4.544
19 H 0.062 0.938
20 C 0.063 3.937
21 N -0.885 5.885
22 Si 0.904 3.096
23 H -0.275 1.275
24 H -0.285 1.285
25 H -0.275 1.275
26 C 0.053 3.947
27 C 0.057 3.943
28 H 0.098 0.902
29 H 0.053 0.947
30 H 0.052 0.948
31 H 0.127 0.873
32 H 0.122 0.878
33 H 0.123 0.877
34 H 0.136 0.864
35 H 0.048 0.952
36 H 0.089 0.911
37 H 0.082 0.918
38 H 0.043 0.957
39 H 0.099 0.901
40 H 0.059 0.941
41 H 0.389 0.611
42 H 0.026 0.974
43 H 0.026 0.974
44 H 0.266 0.734
45 H 0.036 0.964
46 H 0.107 0.893
47 H 0.057 0.943
48 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -28.281 8.180 1.551 29.481
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 O -0.218 6.218
3 C 0.067 3.933
4 C -0.212 4.212
5 C -0.126 4.126
6 C -0.151 4.151
7 C -0.153 4.153
8 C -0.014 4.014
9 N -0.201 5.201
10 C -0.060 4.060
11 C -0.071 4.071
12 N -0.246 5.246
13 C -0.095 4.095
14 C 0.283 3.717
15 O -0.418 6.418
16 N -0.364 5.364
17 C 0.131 3.869
18 C -0.582 4.582
19 H 0.080 0.920
20 C -0.141 4.141
21 N -0.523 5.523
22 Si 0.731 3.269
23 H -0.201 1.201
24 H -0.211 1.211
25 H -0.201 1.201
26 C -0.075 4.075
27 C -0.070 4.070
28 H 0.116 0.884
29 H 0.071 0.929
30 H 0.071 0.929
31 H 0.145 0.855
32 H 0.140 0.860
33 H 0.141 0.859
34 H 0.154 0.846
35 H 0.066 0.934
36 H 0.107 0.893
37 H 0.100 0.900
38 H 0.061 0.939
39 H 0.117 0.883
40 H 0.077 0.923
41 H 0.222 0.778
42 H 0.044 0.956
43 H 0.044 0.956
44 H 0.076 0.924
45 H 0.054 0.946
46 H 0.125 0.875
47 H 0.075 0.925
48 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges -27.688 8.836 1.537 29.104
hybrid contribution 0.201 -1.170 0.132 1.195
sum -27.487 7.665 1.669 28.585
Atomic orbital electron populations
1.23039 0.79046 1.03800 1.01024 1.86189 1.20587 1.26287 1.88699
1.18636 0.90516 0.84593 0.99513 1.21095 0.99765 0.92121 1.08179
1.20861 0.94633 0.96827 1.00267 1.20948 0.93776 0.98127 1.02264
1.21349 1.00741 0.91157 1.02068 1.18302 0.89596 0.90009 1.03482
1.59405 1.08792 1.18332 1.33558 1.22210 1.00703 0.94289 0.88773
1.22191 0.87425 0.96226 1.01267 1.61804 1.06863 1.20497 1.35438
1.21997 0.92791 0.92085 1.02647 1.20296 0.87229 0.86393 0.77770
1.90618 1.82195 1.19013 1.49953 1.46455 1.08856 1.08333 1.72782
1.19070 0.73646 0.96505 0.97660 1.21197 0.91479 0.92259 1.53279
0.91976 1.24955 0.97765 0.96600 0.94732 1.69964 1.10106 1.23382
1.48823 0.86473 0.78994 0.82753 0.78669 1.20078 1.21083 1.20089
1.22365 1.02204 0.93554 0.89352 1.22346 0.85320 0.97774 1.01599
0.88356 0.92873 0.92948 0.85490 0.86017 0.85859 0.84645 0.93368
0.89262 0.89993 0.93881 0.88314 0.92337 0.77831 0.95566 0.95640
0.92403 0.94587 0.87482 0.92530 0.89888
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.16 9.81 101.05 0.99 1.15 16
2 O -0.30 -3.15 8.59 -19.76 -0.17 -3.32 16
3 C 0.11 1.25 6.44 -39.08 -0.25 1.00 16
4 C -0.19 -1.72 9.04 -39.47 -0.36 -2.08 16
5 C -0.11 -0.91 10.04 -39.56 -0.40 -1.31 16
6 C -0.13 -1.22 10.04 -39.58 -0.40 -1.62 16
7 C -0.13 -1.43 8.84 -39.41 -0.35 -1.78 16
8 C 0.08 1.00 5.44 -83.56 -0.45 0.55 16
9 N -0.48 -6.11 4.57 -170.79 -0.78 -6.89 16
10 C 0.07 0.78 5.37 -3.77 -0.02 0.76 16
11 C 0.06 0.68 5.61 -3.77 -0.02 0.66 16
12 N -0.52 -7.62 4.44 -235.91 -1.05 -8.67 16
13 C 0.04 0.52 5.45 -4.97 -0.03 0.50 16
14 C 0.50 9.87 7.53 -10.98 -0.08 9.78 16
15 O -0.54 -12.76 14.34 5.56 0.08 -12.68 16
16 N -0.72 -14.94 5.55 -61.47 -0.34 -15.28 16
17 C 0.25 6.67 5.43 -5.19 -0.03 6.65 16
18 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16
19 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16
20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16
21 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16
22 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16
23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16
25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
26 C 0.05 0.78 5.26 -3.77 -0.02 0.76 16
27 C 0.06 0.74 4.32 -3.77 -0.02 0.72 16
28 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16
29 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16
30 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16
31 H 0.13 0.84 6.30 -52.48 -0.33 0.51 16
32 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16
33 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16
34 H 0.14 1.40 5.88 -52.48 -0.31 1.09 16
35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16
36 H 0.09 0.99 6.37 -51.93 -0.33 0.66 16
37 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16
38 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16
39 H 0.10 1.22 8.03 -51.93 -0.42 0.81 16
40 H 0.06 0.76 8.12 -51.93 -0.42 0.33 16
41 H 0.39 6.93 8.32 -40.82 -0.34 6.59 16
42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16
43 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16
44 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16
45 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16
46 H 0.11 1.87 5.85 -51.93 -0.30 1.57 16
47 H 0.06 0.78 7.12 -51.93 -0.37 0.41 16
48 H 0.08 0.99 7.68 -51.93 -0.40 0.60 16
LS Contribution 382.91 15.07 5.77 5.77
Total: -1.00 -33.34 382.91 -9.97 -43.31
By element:
Atomic # 1 Polarization: 12.35 SS G_CDS: -7.35 Total: 5.00 kcal
Atomic # 6 Polarization: 4.16 SS G_CDS: -1.85 Total: 2.32 kcal
Atomic # 7 Polarization: -54.82 SS G_CDS: -1.43 Total: -56.25 kcal
Atomic # 8 Polarization: -15.91 SS G_CDS: -0.09 Total: -16.00 kcal
Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal
Total LS contribution 5.77 Total: 5.77 kcal
Total: -33.34 -9.97 -43.31 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000027270283.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.621 kcal
(2) G-P(sol) polarization free energy of solvation -33.341 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.720 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.313 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.692 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds