Wall clock time and date at job start Tue Mar 31 2020 17:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36007 * 117.00211 * 2 1 4 4 C 1.38497 * 120.08239 * 359.96749 * 3 2 1 5 5 C 1.38283 * 120.01977 * 180.02562 * 4 3 2 6 6 C 1.38257 * 120.18141 * 359.97438 * 5 4 3 7 7 C 1.38221 * 120.15609 * 359.71722 * 6 5 4 8 8 C 1.38722 * 119.98305 * 0.57845 * 7 6 5 9 9 N 1.39963 * 120.09425 * 179.69830 * 8 7 6 10 10 C 1.46950 * 111.00211 * 246.25455 * 9 8 7 11 11 C 1.53047 * 109.36744 * 183.18413 * 10 9 8 12 12 N 1.46953 * 109.36528 * 301.60246 * 11 10 9 13 13 C 1.46902 * 110.99984 * 183.18765 * 12 11 10 14 14 C 1.50705 * 109.47144 * 169.99814 * 13 12 11 15 15 O 1.21282 * 119.99689 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00071 * 179.97438 * 14 13 12 17 17 C 1.46498 * 119.99995 * 179.97438 * 16 14 13 18 18 C 1.50705 * 109.47162 * 179.72437 * 17 16 14 19 19 H 1.07998 * 120.00025 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99979 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00215 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00021 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47236 * 59.99325 * 22 20 18 24 24 H 1.48494 * 109.46933 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46717 * 299.99737 * 22 20 18 26 26 C 1.46959 * 110.88536 * 59.31655 * 12 11 10 27 27 C 1.46963 * 110.99766 * 10.05389 * 9 8 7 28 28 H 1.08994 * 109.47268 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46859 * 300.00673 * 1 2 3 30 30 H 1.09005 * 109.46507 * 60.00329 * 1 2 3 31 31 H 1.08006 * 119.99166 * 0.03504 * 4 3 2 32 32 H 1.08001 * 119.91040 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.91880 * 179.97438 * 6 5 4 34 34 H 1.08007 * 120.00953 * 180.29771 * 7 6 5 35 35 H 1.08998 * 109.48867 * 63.21694 * 10 9 8 36 36 H 1.09000 * 109.49137 * 303.15367 * 10 9 8 37 37 H 1.08998 * 109.49320 * 181.63100 * 11 10 9 38 38 H 1.09002 * 109.50652 * 61.57526 * 11 10 9 39 39 H 1.08994 * 109.47307 * 49.99579 * 13 12 11 40 40 H 1.09000 * 109.47079 * 289.99342 * 13 12 11 41 41 H 0.96995 * 119.99923 * 359.72265 * 16 14 13 42 42 H 1.09000 * 109.47307 * 299.72811 * 17 16 14 43 43 H 1.09000 * 109.47094 * 59.72716 * 17 16 14 44 44 H 0.97000 * 120.00207 * 180.02562 * 21 20 18 45 45 H 1.09004 * 109.48595 * 60.64440 * 26 12 11 46 46 H 1.08996 * 109.49076 * 180.71579 * 26 12 11 47 47 H 1.09006 * 109.48730 * 296.78109 * 27 9 8 48 48 H 1.09006 * 109.48939 * 56.81868 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2939 2.3745 -0.0007 5 6 1.9231 3.6059 -0.0012 6 6 3.3037 3.6810 -0.0005 7 6 4.0620 2.5254 0.0066 8 6 3.4378 1.2866 0.0009 9 7 4.2034 0.1149 0.0017 10 6 4.0348 -0.6253 -1.2565 11 6 4.8232 -1.9351 -1.1844 12 7 6.2410 -1.6375 -0.9377 13 6 7.0446 -2.8672 -0.9369 14 6 8.5088 -2.5104 -0.9281 15 8 8.8492 -1.3463 -0.9235 16 7 9.4399 -3.4848 -0.9254 17 6 10.8632 -3.1380 -0.9174 18 6 11.6876 -4.3995 -0.9090 19 1 11.2001 -5.3632 -0.9091 20 6 13.0642 -4.3234 -0.9001 21 7 13.6579 -3.1499 -0.8994 22 14 14.0861 -5.8870 -0.8904 23 1 13.7788 -6.6868 -2.1033 24 1 15.5288 -5.5354 -0.8822 25 1 13.7629 -6.6819 0.3216 26 6 6.4097 -0.8972 0.3206 27 6 5.6213 0.4126 0.2484 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 0.2153 2.3194 -0.0006 32 1 1.3345 4.5114 -0.0022 33 1 3.7906 4.6450 -0.0014 34 1 5.1403 2.5869 0.0119 35 1 4.4059 -0.0227 -2.0854 36 1 2.9783 -0.8448 -1.4105 37 1 4.7231 -2.4723 -2.1275 38 1 4.4342 -2.5498 -0.3726 39 1 6.8180 -3.4499 -1.8297 40 1 6.8086 -3.4549 -0.0498 41 1 9.1675 -4.4158 -0.9250 42 1 11.1001 -2.5550 -1.8074 43 1 11.0890 -2.5505 -0.0275 44 1 14.6264 -3.0963 -0.8935 45 1 6.0385 -1.4999 1.1496 46 1 7.4662 -0.6777 0.4745 47 1 6.0104 1.0270 -0.5636 48 1 5.7214 0.9502 1.1913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000027270283.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:33 Heat of formation + Delta-G solvation = -20.691847 kcal Electronic energy + Delta-G solvation = -28377.069928 eV Core-core repulsion = 24432.863502 eV Total energy + Delta-G solvation = -3944.206427 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.88238 -39.44142 -38.39705 -37.36186 -35.25468 -34.08185 -32.32060 -31.24215 -30.63626 -30.20210 -28.49040 -27.49111 -26.70711 -24.55849 -24.02707 -22.38438 -21.90748 -21.82504 -19.79330 -19.61004 -18.47172 -17.11348 -16.96126 -16.43593 -15.99756 -15.80136 -15.52875 -15.32511 -15.06837 -14.85944 -14.75681 -14.36157 -14.34481 -14.14189 -13.94662 -13.64703 -13.37261 -12.77244 -12.64756 -12.41642 -12.25859 -12.01655 -11.89442 -11.81649 -11.52959 -11.35949 -11.34656 -11.18513 -11.01689 -10.92894 -10.86626 -10.72256 -10.29824 -9.69713 -9.39902 -8.98498 -8.78014 -8.71599 -8.19090 -7.83393 -7.80543 -6.15542 -4.22512 1.07823 1.22268 3.02892 3.25807 3.30572 3.32017 3.40540 3.43716 3.67783 3.72463 4.26924 4.44322 4.55827 4.66617 4.75324 4.83040 4.84773 4.97727 5.03668 5.07472 5.17558 5.20275 5.22589 5.29187 5.30696 5.35888 5.47980 5.51386 5.54947 5.57958 5.63177 5.75865 5.82353 5.96590 6.04375 6.06714 6.15230 6.29921 6.48932 6.80039 6.85005 7.01173 7.15159 7.33714 7.35795 7.47318 7.53855 7.68973 7.98603 8.65714 8.80424 9.14788 9.44246 10.94556 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.029934 B = 0.001985 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.173285 B =14103.508185 C =14849.217333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.305 6.305 3 C 0.114 3.886 4 C -0.192 4.192 5 C -0.107 4.107 6 C -0.132 4.132 7 C -0.132 4.132 8 C 0.084 3.916 9 N -0.484 5.484 10 C 0.066 3.934 11 C 0.057 3.943 12 N -0.521 5.521 13 C 0.036 3.964 14 C 0.499 3.501 15 O -0.540 6.540 16 N -0.715 5.715 17 C 0.252 3.748 18 C -0.544 4.544 19 H 0.062 0.938 20 C 0.063 3.937 21 N -0.885 5.885 22 Si 0.904 3.096 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.053 3.947 27 C 0.057 3.943 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.136 0.864 35 H 0.048 0.952 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.043 0.957 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.389 0.611 42 H 0.026 0.974 43 H 0.026 0.974 44 H 0.266 0.734 45 H 0.036 0.964 46 H 0.107 0.893 47 H 0.057 0.943 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.281 8.180 1.551 29.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.218 6.218 3 C 0.067 3.933 4 C -0.212 4.212 5 C -0.126 4.126 6 C -0.151 4.151 7 C -0.153 4.153 8 C -0.014 4.014 9 N -0.201 5.201 10 C -0.060 4.060 11 C -0.071 4.071 12 N -0.246 5.246 13 C -0.095 4.095 14 C 0.283 3.717 15 O -0.418 6.418 16 N -0.364 5.364 17 C 0.131 3.869 18 C -0.582 4.582 19 H 0.080 0.920 20 C -0.141 4.141 21 N -0.523 5.523 22 Si 0.731 3.269 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.075 4.075 27 C -0.070 4.070 28 H 0.116 0.884 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.154 0.846 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.061 0.939 39 H 0.117 0.883 40 H 0.077 0.923 41 H 0.222 0.778 42 H 0.044 0.956 43 H 0.044 0.956 44 H 0.076 0.924 45 H 0.054 0.946 46 H 0.125 0.875 47 H 0.075 0.925 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -27.688 8.836 1.537 29.104 hybrid contribution 0.201 -1.170 0.132 1.195 sum -27.487 7.665 1.669 28.585 Atomic orbital electron populations 1.23039 0.79046 1.03800 1.01024 1.86189 1.20587 1.26287 1.88699 1.18636 0.90516 0.84593 0.99513 1.21095 0.99765 0.92121 1.08179 1.20861 0.94633 0.96827 1.00267 1.20948 0.93776 0.98127 1.02264 1.21349 1.00741 0.91157 1.02068 1.18302 0.89596 0.90009 1.03482 1.59405 1.08792 1.18332 1.33558 1.22210 1.00703 0.94289 0.88773 1.22191 0.87425 0.96226 1.01267 1.61804 1.06863 1.20497 1.35438 1.21997 0.92791 0.92085 1.02647 1.20296 0.87229 0.86393 0.77770 1.90618 1.82195 1.19013 1.49953 1.46455 1.08856 1.08333 1.72782 1.19070 0.73646 0.96505 0.97660 1.21197 0.91479 0.92259 1.53279 0.91976 1.24955 0.97765 0.96600 0.94732 1.69964 1.10106 1.23382 1.48823 0.86473 0.78994 0.82753 0.78669 1.20078 1.21083 1.20089 1.22365 1.02204 0.93554 0.89352 1.22346 0.85320 0.97774 1.01599 0.88356 0.92873 0.92948 0.85490 0.86017 0.85859 0.84645 0.93368 0.89262 0.89993 0.93881 0.88314 0.92337 0.77831 0.95566 0.95640 0.92403 0.94587 0.87482 0.92530 0.89888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.30 -3.15 8.59 -19.76 -0.17 -3.32 16 3 C 0.11 1.25 6.44 -39.08 -0.25 1.00 16 4 C -0.19 -1.72 9.04 -39.47 -0.36 -2.08 16 5 C -0.11 -0.91 10.04 -39.56 -0.40 -1.31 16 6 C -0.13 -1.22 10.04 -39.58 -0.40 -1.62 16 7 C -0.13 -1.43 8.84 -39.41 -0.35 -1.78 16 8 C 0.08 1.00 5.44 -83.56 -0.45 0.55 16 9 N -0.48 -6.11 4.57 -170.79 -0.78 -6.89 16 10 C 0.07 0.78 5.37 -3.77 -0.02 0.76 16 11 C 0.06 0.68 5.61 -3.77 -0.02 0.66 16 12 N -0.52 -7.62 4.44 -235.91 -1.05 -8.67 16 13 C 0.04 0.52 5.45 -4.97 -0.03 0.50 16 14 C 0.50 9.87 7.53 -10.98 -0.08 9.78 16 15 O -0.54 -12.76 14.34 5.56 0.08 -12.68 16 16 N -0.72 -14.94 5.55 -61.47 -0.34 -15.28 16 17 C 0.25 6.67 5.43 -5.19 -0.03 6.65 16 18 C -0.54 -14.76 9.28 -34.44 -0.32 -15.08 16 19 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 20 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 21 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 22 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 C 0.05 0.78 5.26 -3.77 -0.02 0.76 16 27 C 0.06 0.74 4.32 -3.77 -0.02 0.72 16 28 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 30 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 31 H 0.13 0.84 6.30 -52.48 -0.33 0.51 16 32 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.14 1.40 5.88 -52.48 -0.31 1.09 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 0.99 6.37 -51.93 -0.33 0.66 16 37 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 38 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 1.22 8.03 -51.93 -0.42 0.81 16 40 H 0.06 0.76 8.12 -51.93 -0.42 0.33 16 41 H 0.39 6.93 8.32 -40.82 -0.34 6.59 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.11 1.87 5.85 -51.93 -0.30 1.57 16 47 H 0.06 0.78 7.12 -51.93 -0.37 0.41 16 48 H 0.08 0.99 7.68 -51.93 -0.40 0.60 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -33.34 382.91 -9.97 -43.31 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.35 Total: 5.00 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -1.85 Total: 2.32 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -1.43 Total: -56.25 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -0.09 Total: -16.00 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.34 -9.97 -43.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027270283.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.621 kcal (2) G-P(sol) polarization free energy of solvation -33.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds