Wall clock time and date at job start Tue Mar 31 2020 17:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36007 * 117.00211 * 2 1 4 4 C 1.38497 * 120.08239 * 359.96749 * 3 2 1 5 5 C 1.38283 * 120.01977 * 180.02562 * 4 3 2 6 6 C 1.38257 * 120.18141 * 359.97438 * 5 4 3 7 7 C 1.38221 * 120.15609 * 359.71722 * 6 5 4 8 8 C 1.38722 * 119.98305 * 0.57845 * 7 6 5 9 9 N 1.39963 * 120.09425 * 179.69830 * 8 7 6 10 10 C 1.46950 * 111.00211 * 246.25455 * 9 8 7 11 11 C 1.53047 * 109.36744 * 183.18413 * 10 9 8 12 12 N 1.46953 * 109.36528 * 301.60246 * 11 10 9 13 13 C 1.46902 * 110.99984 * 183.18765 * 12 11 10 14 14 C 1.50705 * 109.47144 * 169.99814 * 13 12 11 15 15 O 1.21282 * 119.99689 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00071 * 179.97438 * 14 13 12 17 17 C 1.46498 * 119.99995 * 179.97438 * 16 14 13 18 18 C 1.50705 * 109.47162 * 179.72437 * 17 16 14 19 19 H 1.07998 * 120.00025 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99979 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00215 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00021 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47236 * 59.99325 * 22 20 18 24 24 H 1.48494 * 109.46933 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46717 * 299.99737 * 22 20 18 26 26 C 1.46959 * 110.88536 * 59.31655 * 12 11 10 27 27 C 1.46963 * 110.99766 * 10.05389 * 9 8 7 28 28 H 1.08994 * 109.47268 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46859 * 300.00673 * 1 2 3 30 30 H 1.09005 * 109.46507 * 60.00329 * 1 2 3 31 31 H 1.08006 * 119.99166 * 0.03504 * 4 3 2 32 32 H 1.08001 * 119.91040 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.91880 * 179.97438 * 6 5 4 34 34 H 1.08007 * 120.00953 * 180.29771 * 7 6 5 35 35 H 1.08998 * 109.48867 * 63.21694 * 10 9 8 36 36 H 1.09000 * 109.49137 * 303.15367 * 10 9 8 37 37 H 1.08998 * 109.49320 * 181.63100 * 11 10 9 38 38 H 1.09002 * 109.50652 * 61.57526 * 11 10 9 39 39 H 1.08994 * 109.47307 * 49.99579 * 13 12 11 40 40 H 1.09000 * 109.47079 * 289.99342 * 13 12 11 41 41 H 0.96995 * 119.99923 * 359.72265 * 16 14 13 42 42 H 1.09000 * 109.47307 * 299.72811 * 17 16 14 43 43 H 1.09000 * 109.47094 * 59.72716 * 17 16 14 44 44 H 0.97000 * 120.00207 * 180.02562 * 21 20 18 45 45 H 1.09004 * 109.48595 * 60.64440 * 26 12 11 46 46 H 1.08996 * 109.49076 * 180.71579 * 26 12 11 47 47 H 1.09006 * 109.48730 * 296.78109 * 27 9 8 48 48 H 1.09006 * 109.48939 * 56.81868 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2939 2.3745 -0.0007 5 6 1.9231 3.6059 -0.0012 6 6 3.3037 3.6810 -0.0005 7 6 4.0620 2.5254 0.0066 8 6 3.4378 1.2866 0.0009 9 7 4.2034 0.1149 0.0017 10 6 4.0348 -0.6253 -1.2565 11 6 4.8232 -1.9351 -1.1844 12 7 6.2410 -1.6375 -0.9377 13 6 7.0446 -2.8672 -0.9369 14 6 8.5088 -2.5104 -0.9281 15 8 8.8492 -1.3463 -0.9235 16 7 9.4399 -3.4848 -0.9254 17 6 10.8632 -3.1380 -0.9174 18 6 11.6876 -4.3995 -0.9090 19 1 11.2001 -5.3632 -0.9091 20 6 13.0642 -4.3234 -0.9001 21 7 13.6579 -3.1499 -0.8994 22 14 14.0861 -5.8870 -0.8904 23 1 13.7788 -6.6868 -2.1033 24 1 15.5288 -5.5354 -0.8822 25 1 13.7629 -6.6819 0.3216 26 6 6.4097 -0.8972 0.3206 27 6 5.6213 0.4126 0.2484 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 0.2153 2.3194 -0.0006 32 1 1.3345 4.5114 -0.0022 33 1 3.7906 4.6450 -0.0014 34 1 5.1403 2.5869 0.0119 35 1 4.4059 -0.0227 -2.0854 36 1 2.9783 -0.8448 -1.4105 37 1 4.7231 -2.4723 -2.1275 38 1 4.4342 -2.5498 -0.3726 39 1 6.8180 -3.4499 -1.8297 40 1 6.8086 -3.4549 -0.0498 41 1 9.1675 -4.4158 -0.9250 42 1 11.1001 -2.5550 -1.8074 43 1 11.0890 -2.5505 -0.0275 44 1 14.6264 -3.0963 -0.8935 45 1 6.0385 -1.4999 1.1496 46 1 7.4662 -0.6777 0.4745 47 1 6.0104 1.0270 -0.5636 48 1 5.7214 0.9502 1.1913 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000027270283.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:32 Heat of formation + Delta-G solvation = -45.598417 kcal Electronic energy + Delta-G solvation = -28378.149958 eV Core-core repulsion = 24432.863502 eV Total energy + Delta-G solvation = -3945.286457 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.70898 -40.73630 -39.56225 -38.19396 -36.39406 -35.91003 -34.33284 -32.20784 -31.62971 -30.95936 -29.90649 -28.49162 -27.85337 -25.84462 -25.01965 -24.19363 -22.75724 -22.63950 -21.35840 -20.76495 -19.20254 -18.92221 -17.82841 -17.51643 -17.20768 -17.08972 -16.61627 -16.56350 -16.38478 -15.95605 -15.79057 -15.76966 -15.38504 -15.11534 -15.06495 -14.81731 -14.33892 -14.23864 -14.04372 -13.85482 -13.46242 -13.12448 -12.97269 -12.91095 -12.74663 -12.66782 -12.54058 -12.33336 -12.23360 -12.20019 -11.94327 -11.92373 -11.68634 -11.49985 -10.78117 -10.63889 -10.53311 -9.79110 -9.53610 -9.30711 -8.63180 -8.28234 -6.44933 0.33187 0.48922 1.43269 1.47489 1.55617 1.81700 2.26621 2.41133 2.46880 2.63936 2.87201 3.03083 3.06340 3.76140 3.89695 3.93427 4.03947 4.09642 4.13378 4.17597 4.29123 4.32918 4.37085 4.43277 4.44985 4.48962 4.52107 4.55989 4.64627 4.77024 4.79938 4.81403 4.86931 4.91111 5.02537 5.12663 5.21786 5.26055 5.36621 5.50323 5.58493 5.70991 5.77200 5.85619 5.88927 5.90033 6.08489 6.10394 6.61378 6.66294 6.97154 7.24641 7.55375 8.83638 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.029934 B = 0.001985 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.173285 B =14103.508185 C =14849.217333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.325 6.325 3 C 0.105 3.895 4 C -0.193 4.193 5 C -0.103 4.103 6 C -0.140 4.140 7 C -0.146 4.146 8 C 0.054 3.946 9 N -0.486 5.486 10 C 0.069 3.931 11 C 0.062 3.938 12 N -0.541 5.541 13 C 0.050 3.950 14 C 0.495 3.505 15 O -0.584 6.584 16 N -0.710 5.710 17 C 0.270 3.730 18 C -0.556 4.556 19 H 0.084 0.916 20 C 0.002 3.998 21 N -0.931 5.931 22 Si 0.985 3.015 23 H -0.262 1.262 24 H -0.286 1.286 25 H -0.262 1.262 26 C 0.059 3.941 27 C 0.067 3.933 28 H 0.113 0.887 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.141 0.859 34 H 0.129 0.871 35 H 0.033 0.967 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.051 0.949 39 H 0.131 0.869 40 H 0.085 0.915 41 H 0.408 0.592 42 H -0.015 1.015 43 H -0.014 1.014 44 H 0.268 0.732 45 H 0.041 0.959 46 H 0.072 0.928 47 H 0.041 0.959 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.005 6.491 1.441 31.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.238 6.238 3 C 0.058 3.942 4 C -0.212 4.212 5 C -0.122 4.122 6 C -0.159 4.159 7 C -0.167 4.167 8 C -0.043 4.043 9 N -0.204 5.204 10 C -0.056 4.056 11 C -0.065 4.065 12 N -0.266 5.266 13 C -0.080 4.080 14 C 0.282 3.718 15 O -0.465 6.465 16 N -0.361 5.361 17 C 0.147 3.853 18 C -0.594 4.594 19 H 0.102 0.898 20 C -0.198 4.198 21 N -0.570 5.570 22 Si 0.808 3.192 23 H -0.186 1.186 24 H -0.212 1.212 25 H -0.186 1.186 26 C -0.069 4.069 27 C -0.061 4.061 28 H 0.132 0.868 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.170 0.830 32 H 0.168 0.832 33 H 0.159 0.841 34 H 0.147 0.853 35 H 0.051 0.949 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.069 0.931 39 H 0.149 0.851 40 H 0.103 0.897 41 H 0.244 0.756 42 H 0.003 0.997 43 H 0.003 0.997 44 H 0.077 0.923 45 H 0.059 0.941 46 H 0.091 0.909 47 H 0.059 0.941 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -30.482 7.121 1.426 31.335 hybrid contribution 0.928 -0.517 0.165 1.075 sum -29.554 6.604 1.591 30.325 Atomic orbital electron populations 1.23303 0.76989 1.05252 1.02041 1.86145 1.22771 1.26241 1.88677 1.18782 0.90275 0.85549 0.99558 1.21429 1.01044 0.91571 1.07121 1.21249 0.94474 0.97891 0.98562 1.21221 0.94448 0.98274 1.01920 1.21438 1.00736 0.91773 1.02763 1.18504 0.90398 0.89945 1.05438 1.59456 1.07907 1.19101 1.33907 1.22195 1.01149 0.94091 0.88179 1.22252 0.85284 0.96394 1.02570 1.61753 1.08714 1.20820 1.35323 1.21933 0.88235 0.92512 1.05339 1.21326 0.89365 0.85341 0.75799 1.90608 1.83349 1.21044 1.51458 1.46182 1.06864 1.09792 1.73244 1.18481 0.77143 0.95834 0.93885 1.21606 0.92002 0.92946 1.52864 0.89762 1.26087 0.99349 1.00411 0.93914 1.70136 1.10538 1.26326 1.49965 0.85201 0.76562 0.77909 0.79503 1.18628 1.21174 1.18646 1.22183 1.00320 0.94532 0.89897 1.22170 0.86011 0.96658 1.01254 0.86834 0.91983 0.91684 0.82953 0.83153 0.84145 0.85348 0.94880 0.88257 0.87829 0.93095 0.85092 0.89713 0.75639 0.99687 0.99651 0.92292 0.94077 0.90935 0.94103 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.32 -6.22 8.59 -93.63 -0.80 -7.02 16 3 C 0.11 2.18 6.44 22.59 0.15 2.33 16 4 C -0.19 -3.03 9.04 22.34 0.20 -2.82 16 5 C -0.10 -1.52 10.04 22.28 0.22 -1.30 16 6 C -0.14 -2.45 10.04 22.27 0.22 -2.23 16 7 C -0.15 -3.24 8.84 22.38 0.20 -3.04 16 8 C 0.05 1.30 5.44 38.22 0.21 1.50 16 9 N -0.49 -12.35 4.57 -694.27 -3.18 -15.52 16 10 C 0.07 1.61 5.37 86.31 0.46 2.08 16 11 C 0.06 1.36 5.61 86.31 0.48 1.85 16 12 N -0.54 -15.53 4.44 -900.29 -4.00 -19.53 16 13 C 0.05 1.38 5.45 85.56 0.47 1.85 16 14 C 0.49 19.90 7.53 87.66 0.66 20.56 16 15 O -0.58 -29.13 14.34 -3.04 -0.04 -29.18 16 16 N -0.71 -30.04 5.55 -466.78 -2.59 -32.63 16 17 C 0.27 14.94 5.43 85.63 0.46 15.41 16 18 C -0.56 -30.43 9.28 25.60 0.24 -30.19 16 19 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 20 C 0.00 0.11 5.46 84.65 0.46 0.57 16 21 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 22 Si 0.99 42.51 29.54 68.60 2.03 44.53 16 23 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 24 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 25 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 26 C 0.06 1.79 5.26 86.31 0.45 2.24 16 27 C 0.07 1.83 4.32 86.31 0.37 2.20 16 28 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.49 7.66 -2.39 -0.02 0.48 16 30 H 0.06 0.47 7.66 -2.38 -0.02 0.45 16 31 H 0.15 1.52 6.30 -2.91 -0.02 1.50 16 32 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 33 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 34 H 0.13 2.88 5.88 -2.91 -0.02 2.86 16 35 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.10 2.10 6.37 -2.39 -0.02 2.08 16 37 H 0.10 1.82 8.07 -2.39 -0.02 1.80 16 38 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.13 2.80 8.03 -2.39 -0.02 2.78 16 40 H 0.09 1.95 8.12 -2.39 -0.02 1.93 16 41 H 0.41 14.05 8.32 -92.71 -0.77 13.28 16 42 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 43 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 44 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 45 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 46 H 0.07 2.72 5.85 -2.39 -0.01 2.70 16 47 H 0.04 1.22 7.12 -2.38 -0.02 1.21 16 48 H 0.09 2.24 7.68 -2.38 -0.02 2.22 16 Total: -1.00 -76.33 382.91 -1.73 -78.05 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 0.20 Total: 25.42 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 6.38 Total: 12.28 kcal Atomic # 7 Polarization: -114.61 SS G_CDS: -9.48 Total: -124.09 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -0.85 Total: -36.20 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -76.33 -1.73 -78.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000027270283.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.455 kcal (2) G-P(sol) polarization free energy of solvation -76.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds