Wall clock time and date at job start Tue Mar 31 2020 17:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35902 * 117.00050 * 2 1 4 4 C 1.38812 * 120.01619 * 0.02562 * 3 2 1 5 5 C 1.38180 * 120.09085 * 179.97438 * 4 3 2 6 6 C 1.38151 * 120.12695 * 359.97438 * 5 4 3 7 7 C 1.38929 * 120.03832 * 0.05229 * 6 5 4 8 8 N 1.39669 * 120.04736 * 179.97438 * 7 6 5 9 9 C 1.46955 * 110.99894 * 359.97438 * 8 7 6 10 10 C 1.53055 * 109.36220 * 183.18994 * 9 8 7 11 11 N 1.46965 * 109.36354 * 301.59453 * 10 9 8 12 12 C 1.46889 * 110.99870 * 183.18786 * 11 10 9 13 13 C 1.50706 * 109.47109 * 170.00198 * 12 11 10 14 14 O 1.21281 * 119.99699 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00080 * 180.02562 * 13 12 11 16 16 C 1.46506 * 119.99969 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.47148 * 179.72251 * 16 15 13 18 18 H 1.08002 * 120.00318 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99922 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99824 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99920 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47212 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46550 * 120.00565 * 21 19 17 24 24 H 1.48492 * 109.47285 * 240.00185 * 21 19 17 25 25 C 1.46959 * 110.87772 * 59.32159 * 11 10 9 26 26 C 1.46955 * 110.99999 * 123.79695 * 8 7 6 27 27 C 1.38573 * 120.01808 * 180.32091 * 3 2 1 28 28 H 1.09004 * 109.46790 * 59.99703 * 1 2 3 29 29 H 1.08996 * 109.47269 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46642 * 300.00186 * 1 2 3 31 31 H 1.08001 * 119.95767 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.93539 * 180.02562 * 5 4 3 33 33 H 1.08005 * 119.98284 * 180.02562 * 6 5 4 34 34 H 1.08990 * 109.49170 * 63.22100 * 9 8 7 35 35 H 1.08995 * 109.50433 * 303.16397 * 9 8 7 36 36 H 1.08995 * 109.48843 * 181.63413 * 10 9 8 37 37 H 1.08996 * 109.50922 * 61.57420 * 10 9 8 38 38 H 1.09004 * 109.47256 * 50.00565 * 12 11 10 39 39 H 1.08998 * 109.47820 * 290.00375 * 12 11 10 40 40 H 0.97005 * 120.00161 * 359.72088 * 15 13 12 41 41 H 1.09001 * 109.46512 * 299.72412 * 16 15 13 42 42 H 1.08998 * 109.47174 * 59.71534 * 16 15 13 43 43 H 0.97005 * 119.99648 * 179.97438 * 20 19 17 44 44 H 1.09007 * 109.48694 * 60.64644 * 25 11 10 45 45 H 1.09001 * 109.48949 * 180.71065 * 25 11 10 46 46 H 1.09002 * 109.49203 * 296.78096 * 26 8 7 47 47 H 1.09009 * 109.49103 * 56.82295 * 26 8 7 48 48 H 1.07996 * 120.06259 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2903 2.3753 0.0005 5 6 1.9161 3.6073 0.0011 6 6 3.2954 3.6844 0.0016 7 6 4.0570 2.5225 0.0005 8 7 5.4515 2.6002 0.0005 9 6 5.9009 3.9994 0.0012 10 6 7.4287 4.0416 -0.0792 11 7 7.9971 3.3084 1.0606 12 6 9.4637 3.3902 1.0606 13 6 9.9973 2.8451 2.3603 14 8 9.2311 2.4299 3.2038 15 7 11.3258 2.8200 2.5858 16 6 11.8445 2.2896 3.8491 17 6 13.3494 2.3679 3.8467 18 1 13.8678 2.7719 2.9896 19 6 14.0646 1.9237 4.9386 20 7 13.4335 1.4313 5.9820 21 14 15.9302 2.0201 4.9352 22 1 16.3931 2.6087 3.6528 23 1 16.3837 2.8729 6.0632 24 1 16.4966 0.6559 5.0872 25 6 7.5476 1.9093 1.0600 26 6 6.0199 1.8666 1.1399 27 6 3.4298 1.2838 -0.0067 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2118 2.3183 0.0005 32 1 1.3257 4.5116 0.0019 33 1 3.7821 4.6486 0.0024 34 1 5.5714 4.4868 0.9186 35 1 5.4770 4.5181 -0.8586 36 1 7.7659 5.0777 -0.0496 37 1 7.7572 3.5787 -1.0097 38 1 9.7697 4.4306 0.9501 39 1 9.8604 2.8048 0.2310 40 1 11.9388 3.1491 1.9098 41 1 11.4514 2.8775 4.6786 42 1 11.5348 1.2506 3.9614 43 1 13.9367 1.1185 6.7500 44 1 7.8772 1.4219 0.1424 45 1 7.9715 1.3908 1.9200 46 1 5.6917 2.3293 2.0707 47 1 5.6824 0.8304 1.1102 48 1 4.0193 0.3789 -0.0124 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043765043.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:36 Heat of formation + Delta-G solvation = -22.533519 kcal Electronic energy + Delta-G solvation = -27904.561861 eV Core-core repulsion = 23960.275573 eV Total energy + Delta-G solvation = -3944.286288 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.80656 -39.69618 -38.74892 -37.24372 -35.04984 -34.09843 -32.33811 -31.67158 -30.76463 -30.11062 -28.34891 -27.61366 -26.75535 -24.60946 -24.25706 -22.37110 -22.09940 -21.56838 -19.92400 -19.65603 -18.52345 -17.15736 -16.65224 -16.31372 -16.15447 -16.02542 -15.66185 -15.40526 -15.31785 -15.06779 -14.85312 -14.44076 -14.19861 -14.15348 -13.79138 -13.72273 -13.32967 -12.86024 -12.70540 -12.54408 -12.38468 -12.11594 -11.96383 -11.79318 -11.55012 -11.41854 -11.34571 -11.25707 -11.04215 -10.96297 -10.92930 -10.77154 -10.31381 -9.88827 -9.38136 -9.01653 -8.73913 -8.56206 -8.25933 -8.03669 -7.85625 -6.17160 -4.23994 1.12038 1.22989 2.89868 3.23063 3.30096 3.33042 3.37322 3.41474 3.63202 3.75429 4.24182 4.41311 4.51529 4.64546 4.76635 4.79547 4.80785 4.91592 4.94095 4.99253 5.12206 5.15359 5.18888 5.19294 5.30441 5.31916 5.37806 5.46870 5.51571 5.58850 5.60403 5.66471 5.73186 5.95254 5.97117 6.04220 6.12709 6.20827 6.28009 6.76225 6.88456 7.03435 7.07495 7.18070 7.32528 7.45234 7.52186 7.67493 7.96951 8.63680 8.78969 9.12400 9.42913 10.93040 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026303 B = 0.001853 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.266763 B =15104.917866 C =15800.610120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.150 3.850 4 C -0.239 4.239 5 C -0.055 4.055 6 C -0.208 4.208 7 C 0.157 3.843 8 N -0.492 5.492 9 C 0.056 3.944 10 C 0.055 3.945 11 N -0.521 5.521 12 C 0.036 3.964 13 C 0.499 3.501 14 O -0.539 6.539 15 N -0.715 5.715 16 C 0.251 3.749 17 C -0.543 4.543 18 H 0.063 0.937 19 C 0.063 3.937 20 N -0.885 5.885 21 Si 0.904 3.096 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.051 3.949 26 C 0.065 3.935 27 C -0.175 4.175 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.390 0.610 41 H 0.027 0.973 42 H 0.026 0.974 43 H 0.265 0.735 44 H 0.037 0.963 45 H 0.109 0.891 46 H 0.058 0.942 47 H 0.086 0.914 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.607 3.775 -16.345 28.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.231 6.231 3 C 0.104 3.896 4 C -0.258 4.258 5 C -0.073 4.073 6 C -0.229 4.229 7 C 0.058 3.942 8 N -0.207 5.207 9 C -0.071 4.071 10 C -0.073 4.073 11 N -0.246 5.246 12 C -0.095 4.095 13 C 0.282 3.718 14 O -0.418 6.418 15 N -0.364 5.364 16 C 0.130 3.870 17 C -0.582 4.582 18 H 0.081 0.919 19 C -0.141 4.141 20 N -0.522 5.522 21 Si 0.731 3.269 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.077 4.077 26 C -0.060 4.060 27 C -0.196 4.196 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.061 0.939 38 H 0.118 0.882 39 H 0.077 0.923 40 H 0.222 0.778 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.075 0.925 44 H 0.055 0.945 45 H 0.127 0.873 46 H 0.076 0.924 47 H 0.104 0.896 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -23.922 3.185 -15.501 28.682 hybrid contribution 1.116 0.318 -0.421 1.234 sum -22.806 3.503 -15.921 28.033 Atomic orbital electron populations 1.23048 0.78369 1.03883 1.01344 1.86073 1.21384 1.27033 1.88599 1.18760 0.91830 0.84074 0.94948 1.21116 0.99802 0.92365 1.12534 1.20749 0.94107 0.96885 0.95591 1.21232 0.94172 0.97858 1.09599 1.18642 0.88218 0.92758 0.94532 1.59195 1.05052 1.14501 1.41942 1.22346 0.95210 0.87598 1.01984 1.22218 0.93616 0.99277 0.92231 1.61798 1.07124 1.13825 1.41838 1.21998 0.88363 1.02591 0.96546 1.20287 0.83195 0.79887 0.88382 1.90625 1.56817 1.47762 1.46552 1.46458 1.05587 1.62732 1.21589 1.19086 0.93403 0.94567 0.79911 1.21272 0.90831 1.43266 1.02782 0.91859 1.24960 0.99201 0.94757 0.95148 1.69987 1.35859 1.40552 1.05846 0.86362 0.84584 0.77836 0.78127 1.19647 1.20800 1.20810 1.22403 0.93797 0.89002 1.02491 1.22324 0.94672 0.98582 0.90431 1.19910 0.91369 0.97458 1.10895 0.92682 0.88275 0.92617 0.85765 0.85836 0.85320 0.92330 0.89565 0.89727 0.93875 0.88247 0.92280 0.77816 0.95534 0.95612 0.92504 0.94450 0.87282 0.92372 0.89553 0.84938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.25 10.49 -19.43 -0.20 -3.46 16 3 C 0.15 1.62 6.68 -39.25 -0.26 1.36 16 4 C -0.24 -2.19 9.04 -39.39 -0.36 -2.54 16 5 C -0.05 -0.48 10.03 -39.63 -0.40 -0.88 16 6 C -0.21 -2.07 8.81 -39.36 -0.35 -2.41 16 7 C 0.16 1.79 5.63 -83.81 -0.47 1.32 16 8 N -0.49 -5.72 4.75 -170.98 -0.81 -6.53 16 9 C 0.06 0.57 4.29 -3.77 -0.02 0.55 16 10 C 0.05 0.58 5.61 -3.76 -0.02 0.56 16 11 N -0.52 -7.24 4.45 -235.91 -1.05 -8.29 16 12 C 0.04 0.51 5.45 -4.98 -0.03 0.48 16 13 C 0.50 9.68 7.53 -10.98 -0.08 9.60 16 14 O -0.54 -12.62 14.34 5.56 0.08 -12.54 16 15 N -0.71 -14.73 5.55 -61.47 -0.34 -15.07 16 16 C 0.25 6.60 5.43 -5.19 -0.03 6.58 16 17 C -0.54 -14.66 9.28 -34.44 -0.32 -14.98 16 18 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 20 N -0.88 -26.05 13.29 55.43 0.74 -25.31 16 21 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C 0.05 0.72 5.26 -3.77 -0.02 0.70 16 26 C 0.06 0.83 5.38 -3.77 -0.02 0.81 16 27 C -0.18 -2.04 9.13 -39.24 -0.36 -2.40 16 28 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.28 7.66 -51.93 -0.40 -0.11 16 31 H 0.12 0.85 6.29 -52.49 -0.33 0.52 16 32 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.13 1.09 5.80 -52.48 -0.30 0.79 16 34 H 0.06 0.63 7.58 -51.93 -0.39 0.24 16 35 H 0.09 0.72 7.17 -51.93 -0.37 0.35 16 36 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 37 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.10 1.17 8.03 -51.93 -0.42 0.75 16 39 H 0.06 0.73 8.12 -51.93 -0.42 0.30 16 40 H 0.39 6.82 8.32 -40.82 -0.34 6.48 16 41 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 45 H 0.11 1.87 5.85 -51.93 -0.30 1.56 16 46 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.09 1.02 6.83 -51.92 -0.35 0.66 16 48 H 0.13 1.52 7.20 -52.49 -0.38 1.14 16 LS Contribution 383.94 15.07 5.79 5.79 Total: -1.00 -33.26 383.94 -9.98 -43.25 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.32 Total: 4.86 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -1.83 Total: 1.54 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -1.47 Total: -55.20 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.12 Total: -16.00 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.26 -9.98 -43.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043765043.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.712 kcal (2) G-P(sol) polarization free energy of solvation -33.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds