Wall clock time and date at job start Tue Mar 31 2020 17:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35902 * 117.00050 * 2 1 4 4 C 1.38812 * 120.01619 * 0.02562 * 3 2 1 5 5 C 1.38180 * 120.09085 * 179.97438 * 4 3 2 6 6 C 1.38151 * 120.12695 * 359.97438 * 5 4 3 7 7 C 1.38929 * 120.03832 * 0.05229 * 6 5 4 8 8 N 1.39669 * 120.04736 * 179.97438 * 7 6 5 9 9 C 1.46955 * 110.99894 * 359.97438 * 8 7 6 10 10 C 1.53055 * 109.36220 * 183.18994 * 9 8 7 11 11 N 1.46965 * 109.36354 * 301.59453 * 10 9 8 12 12 C 1.46889 * 110.99870 * 183.18786 * 11 10 9 13 13 C 1.50706 * 109.47109 * 170.00198 * 12 11 10 14 14 O 1.21281 * 119.99699 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00080 * 180.02562 * 13 12 11 16 16 C 1.46506 * 119.99969 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.47148 * 179.72251 * 16 15 13 18 18 H 1.08002 * 120.00318 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99922 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99824 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99920 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47212 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46550 * 120.00565 * 21 19 17 24 24 H 1.48492 * 109.47285 * 240.00185 * 21 19 17 25 25 C 1.46959 * 110.87772 * 59.32159 * 11 10 9 26 26 C 1.46955 * 110.99999 * 123.79695 * 8 7 6 27 27 C 1.38573 * 120.01808 * 180.32091 * 3 2 1 28 28 H 1.09004 * 109.46790 * 59.99703 * 1 2 3 29 29 H 1.08996 * 109.47269 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46642 * 300.00186 * 1 2 3 31 31 H 1.08001 * 119.95767 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.93539 * 180.02562 * 5 4 3 33 33 H 1.08005 * 119.98284 * 180.02562 * 6 5 4 34 34 H 1.08990 * 109.49170 * 63.22100 * 9 8 7 35 35 H 1.08995 * 109.50433 * 303.16397 * 9 8 7 36 36 H 1.08995 * 109.48843 * 181.63413 * 10 9 8 37 37 H 1.08996 * 109.50922 * 61.57420 * 10 9 8 38 38 H 1.09004 * 109.47256 * 50.00565 * 12 11 10 39 39 H 1.08998 * 109.47820 * 290.00375 * 12 11 10 40 40 H 0.97005 * 120.00161 * 359.72088 * 15 13 12 41 41 H 1.09001 * 109.46512 * 299.72412 * 16 15 13 42 42 H 1.08998 * 109.47174 * 59.71534 * 16 15 13 43 43 H 0.97005 * 119.99648 * 179.97438 * 20 19 17 44 44 H 1.09007 * 109.48694 * 60.64644 * 25 11 10 45 45 H 1.09001 * 109.48949 * 180.71065 * 25 11 10 46 46 H 1.09002 * 109.49203 * 296.78096 * 26 8 7 47 47 H 1.09009 * 109.49103 * 56.82295 * 26 8 7 48 48 H 1.07996 * 120.06259 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2903 2.3753 0.0005 5 6 1.9161 3.6073 0.0011 6 6 3.2954 3.6844 0.0016 7 6 4.0570 2.5225 0.0005 8 7 5.4515 2.6002 0.0005 9 6 5.9009 3.9994 0.0012 10 6 7.4287 4.0416 -0.0792 11 7 7.9971 3.3084 1.0606 12 6 9.4637 3.3902 1.0606 13 6 9.9973 2.8451 2.3603 14 8 9.2311 2.4299 3.2038 15 7 11.3258 2.8200 2.5858 16 6 11.8445 2.2896 3.8491 17 6 13.3494 2.3679 3.8467 18 1 13.8678 2.7719 2.9896 19 6 14.0646 1.9237 4.9386 20 7 13.4335 1.4313 5.9820 21 14 15.9302 2.0201 4.9352 22 1 16.3931 2.6087 3.6528 23 1 16.3837 2.8729 6.0632 24 1 16.4966 0.6559 5.0872 25 6 7.5476 1.9093 1.0600 26 6 6.0199 1.8666 1.1399 27 6 3.4298 1.2838 -0.0067 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2118 2.3183 0.0005 32 1 1.3257 4.5116 0.0019 33 1 3.7821 4.6486 0.0024 34 1 5.5714 4.4868 0.9186 35 1 5.4770 4.5181 -0.8586 36 1 7.7659 5.0777 -0.0496 37 1 7.7572 3.5787 -1.0097 38 1 9.7697 4.4306 0.9501 39 1 9.8604 2.8048 0.2310 40 1 11.9388 3.1491 1.9098 41 1 11.4514 2.8775 4.6786 42 1 11.5348 1.2506 3.9614 43 1 13.9367 1.1185 6.7500 44 1 7.8772 1.4219 0.1424 45 1 7.9715 1.3908 1.9200 46 1 5.6917 2.3293 2.0707 47 1 5.6824 0.8304 1.1102 48 1 4.0193 0.3789 -0.0124 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043765043.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:35 Heat of formation + Delta-G solvation = -47.816471 kcal Electronic energy + Delta-G solvation = -27905.658212 eV Core-core repulsion = 23960.275573 eV Total energy + Delta-G solvation = -3945.382639 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.63867 -40.78182 -39.97636 -38.19942 -36.22412 -35.78908 -34.33457 -32.52040 -31.70382 -31.01709 -29.75624 -28.46648 -27.96731 -25.85488 -25.16058 -24.20360 -22.90753 -22.43090 -21.34537 -20.82126 -19.29001 -18.92732 -17.56805 -17.45584 -17.26844 -16.90100 -16.74738 -16.67709 -16.57393 -16.21345 -15.93313 -15.70654 -15.50973 -15.30749 -14.95337 -14.59235 -14.35477 -14.15535 -14.06165 -13.88535 -13.47234 -13.19344 -13.14049 -12.89138 -12.84655 -12.74677 -12.52459 -12.30539 -12.22042 -12.13958 -12.03230 -11.94507 -11.73195 -11.44775 -10.80894 -10.76012 -10.56066 -9.78968 -9.35731 -9.28976 -8.85265 -8.28986 -6.45454 0.34667 0.47235 1.43379 1.44465 1.57954 1.82193 2.23589 2.27682 2.45898 2.63727 2.96290 3.02627 3.06063 3.72594 3.85786 3.93576 4.04108 4.11420 4.15166 4.19161 4.23579 4.28928 4.35521 4.39577 4.40127 4.45994 4.52852 4.53931 4.58358 4.72971 4.75332 4.83558 4.86943 4.92335 5.02227 5.12804 5.22668 5.25809 5.32100 5.45619 5.50559 5.55786 5.71259 5.84817 5.87284 5.91235 6.09514 6.23243 6.47112 6.66571 6.97389 7.24441 7.55898 8.83385 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.026303 B = 0.001853 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.266763 B =15104.917866 C =15800.610120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.137 3.863 4 C -0.237 4.237 5 C -0.054 4.054 6 C -0.212 4.212 7 C 0.140 3.860 8 N -0.494 5.494 9 C 0.055 3.945 10 C 0.057 3.943 11 N -0.541 5.541 12 C 0.051 3.949 13 C 0.493 3.507 14 O -0.585 6.585 15 N -0.710 5.710 16 C 0.268 3.732 17 C -0.555 4.555 18 H 0.085 0.915 19 C 0.002 3.998 20 N -0.932 5.932 21 Si 0.985 3.015 22 H -0.252 1.252 23 H -0.279 1.279 24 H -0.280 1.280 25 C 0.058 3.942 26 C 0.075 3.925 27 C -0.197 4.197 28 H 0.068 0.932 29 H 0.116 0.884 30 H 0.065 0.935 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.144 0.856 34 H 0.051 0.949 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.052 0.948 38 H 0.133 0.867 39 H 0.086 0.914 40 H 0.408 0.592 41 H -0.015 1.015 42 H -0.015 1.015 43 H 0.268 0.732 44 H 0.045 0.955 45 H 0.071 0.929 46 H 0.036 0.964 47 H 0.086 0.914 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.754 5.863 -18.961 30.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.254 6.254 3 C 0.091 3.909 4 C -0.256 4.256 5 C -0.072 4.072 6 C -0.233 4.233 7 C 0.042 3.958 8 N -0.209 5.209 9 C -0.071 4.071 10 C -0.070 4.070 11 N -0.267 5.267 12 C -0.079 4.079 13 C 0.280 3.720 14 O -0.466 6.466 15 N -0.360 5.360 16 C 0.145 3.855 17 C -0.593 4.593 18 H 0.103 0.897 19 C -0.198 4.198 20 N -0.570 5.570 21 Si 0.808 3.192 22 H -0.175 1.175 23 H -0.205 1.205 24 H -0.206 1.206 25 C -0.071 4.071 26 C -0.051 4.051 27 C -0.218 4.218 28 H 0.086 0.914 29 H 0.134 0.866 30 H 0.083 0.917 31 H 0.167 0.833 32 H 0.172 0.828 33 H 0.162 0.838 34 H 0.069 0.931 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.070 0.930 38 H 0.151 0.849 39 H 0.103 0.897 40 H 0.244 0.756 41 H 0.003 0.997 42 H 0.003 0.997 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.089 0.911 46 H 0.055 0.945 47 H 0.104 0.896 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -24.089 5.301 -18.181 30.642 hybrid contribution 0.979 -0.363 0.404 1.120 sum -23.110 4.938 -17.777 29.572 Atomic orbital electron populations 1.23341 0.76262 1.05471 1.02393 1.86044 1.23670 1.27141 1.88593 1.18938 0.91781 0.84985 0.95191 1.21439 1.01048 0.91851 1.11302 1.21141 0.93950 0.97928 0.94214 1.21480 0.94817 0.97868 1.09145 1.18771 0.88155 0.93290 0.95609 1.59209 1.05478 1.15295 1.40936 1.22452 0.95180 0.86853 1.02664 1.22335 0.93547 1.00050 0.91046 1.61747 1.07146 1.13590 1.44195 1.21932 0.88501 1.04381 0.93124 1.21382 0.82147 0.78481 0.89955 1.90615 1.57801 1.49425 1.48759 1.46182 1.06770 1.62920 1.20177 1.18491 0.93784 0.91744 0.81437 1.21674 0.90953 1.43056 1.03580 0.89704 1.26085 1.05118 0.94005 0.94548 1.70152 1.38333 1.41720 1.06833 0.85103 0.77277 0.77872 0.78904 1.17520 1.20505 1.20559 1.22189 0.94417 0.89453 1.00997 1.22112 0.93906 0.98783 0.90283 1.20001 0.92178 0.97403 1.12252 0.91376 0.86610 0.91686 0.83338 0.82836 0.83792 0.93102 0.87101 0.87285 0.92955 0.84895 0.89657 0.75621 0.99664 0.99691 0.92309 0.93718 0.91078 0.94530 0.89577 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -6.94 10.49 -92.44 -0.97 -7.91 16 3 C 0.14 2.93 6.68 22.49 0.15 3.08 16 4 C -0.24 -3.91 9.04 22.39 0.20 -3.71 16 5 C -0.05 -0.82 10.03 22.24 0.22 -0.60 16 6 C -0.21 -3.87 8.81 22.41 0.20 -3.67 16 7 C 0.14 3.16 5.63 38.20 0.22 3.37 16 8 N -0.49 -11.29 4.75 -694.86 -3.30 -14.60 16 9 C 0.06 1.02 4.29 86.31 0.37 1.39 16 10 C 0.06 1.06 5.61 86.31 0.48 1.55 16 11 N -0.54 -14.51 4.45 -900.27 -4.00 -18.51 16 12 C 0.05 1.33 5.45 85.56 0.47 1.79 16 13 C 0.49 19.45 7.53 87.66 0.66 20.11 16 14 O -0.59 -28.93 14.34 -3.03 -0.04 -28.98 16 15 N -0.71 -29.59 5.55 -466.78 -2.59 -32.18 16 16 C 0.27 14.80 5.43 85.63 0.46 15.26 16 17 C -0.55 -30.19 9.28 25.60 0.24 -29.96 16 18 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 19 C 0.00 0.10 5.46 84.66 0.46 0.57 16 20 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 21 Si 0.99 42.39 29.54 68.60 2.03 44.41 16 22 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 23 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 25 C 0.06 1.68 5.26 86.31 0.45 2.14 16 26 C 0.07 2.01 5.38 86.31 0.46 2.47 16 27 C -0.20 -4.73 9.13 22.49 0.21 -4.53 16 28 H 0.07 0.53 7.66 -2.39 -0.02 0.51 16 29 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.55 7.66 -2.39 -0.02 0.54 16 31 H 0.15 1.63 6.29 -2.91 -0.02 1.61 16 32 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 33 H 0.14 2.09 5.80 -2.91 -0.02 2.07 16 34 H 0.05 1.03 7.58 -2.39 -0.02 1.01 16 35 H 0.11 1.51 7.17 -2.39 -0.02 1.50 16 36 H 0.11 1.51 8.07 -2.39 -0.02 1.49 16 37 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.13 2.62 8.03 -2.39 -0.02 2.60 16 39 H 0.09 1.84 8.12 -2.39 -0.02 1.82 16 40 H 0.41 13.79 8.32 -92.70 -0.77 13.02 16 41 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 42 H -0.01 -0.93 8.14 -2.39 -0.02 -0.94 16 43 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 44 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 45 H 0.07 2.63 5.85 -2.39 -0.01 2.61 16 46 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.09 2.23 6.83 -2.38 -0.02 2.21 16 48 H 0.12 3.02 7.20 -2.91 -0.02 3.00 16 Total: -1.00 -77.06 383.94 -2.03 -79.08 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: 0.20 Total: 24.42 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 6.37 Total: 10.58 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -9.61 Total: -121.62 kcal Atomic # 8 Polarization: -35.87 SS G_CDS: -1.01 Total: -36.88 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Total: -77.06 -2.03 -79.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043765043.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.267 kcal (2) G-P(sol) polarization free energy of solvation -77.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds