Wall clock time and date at job start Tue Mar 31 2020 17:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99930 * 2 1 4 4 C 1.53008 * 109.46954 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.46942 * 61.02240 * 4 3 2 6 6 C 1.46901 * 111.00260 * 176.23756 * 5 4 3 7 7 C 1.53236 * 109.34177 * 172.74263 * 6 5 4 8 8 N 1.47084 * 108.52038 * 53.83093 * 7 6 5 9 9 C 1.34769 * 120.88054 * 128.83606 * 8 7 6 10 10 O 1.21580 * 120.00391 * 354.81019 * 9 8 7 11 11 N 1.34781 * 119.99982 * 174.80345 * 9 8 7 12 12 C 1.39241 * 120.00118 * 186.31726 * 11 9 8 13 13 C 1.39473 * 119.83184 * 33.56905 * 12 11 9 14 14 C 1.36384 * 120.16595 * 179.75979 * 13 12 11 15 15 C 1.40862 * 119.82718 * 0.51134 * 14 13 12 16 16 C 1.41159 * 120.16410 * 179.71837 * 15 14 13 17 17 H 1.08000 * 119.99747 * 209.63913 * 16 15 14 18 18 C 1.39890 * 120.00007 * 29.64441 * 16 15 14 19 19 N 1.30888 * 119.99958 * 10.94279 * 18 16 15 20 20 Si 1.86792 * 120.00215 * 190.94857 * 18 16 15 21 21 H 1.48498 * 109.47290 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47425 * 119.99919 * 20 18 16 23 23 H 1.48503 * 109.47149 * 239.99751 * 20 18 16 24 24 C 1.40871 * 119.67409 * 359.74410 * 15 14 13 25 25 C 1.36376 * 119.82836 * 0.02562 * 24 15 14 26 26 C 1.47083 * 118.23454 * 308.80853 * 8 7 6 27 27 C 1.46899 * 111.00118 * 51.92948 * 5 4 3 28 28 H 1.09010 * 109.47095 * 300.00248 * 1 2 3 29 29 H 1.08996 * 109.47499 * 59.99625 * 1 2 3 30 30 H 1.08995 * 109.47466 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47271 * 60.00341 * 3 2 1 32 32 H 1.08997 * 109.47531 * 299.99871 * 3 2 1 33 33 H 1.08995 * 109.46945 * 301.01615 * 4 3 2 34 34 H 1.09005 * 109.47143 * 181.01637 * 4 3 2 35 35 H 1.09004 * 109.48942 * 52.77839 * 6 5 4 36 36 H 1.09006 * 109.48593 * 292.70649 * 6 5 4 37 37 H 1.09001 * 109.62530 * 173.53858 * 7 6 5 38 38 H 1.08996 * 109.62879 * 293.92450 * 7 6 5 39 39 H 0.97000 * 119.99586 * 6.32354 * 11 9 8 40 40 H 1.07993 * 119.91822 * 0.02562 * 13 12 11 41 41 H 1.07999 * 120.08620 * 180.25779 * 14 13 12 42 42 H 0.96997 * 120.00042 * 179.97438 * 19 18 16 43 43 H 1.08004 * 120.08624 * 179.97438 * 24 15 14 44 44 H 1.07994 * 119.91611 * 179.97438 * 25 24 15 45 45 H 1.09002 * 109.62326 * 170.89647 * 26 8 7 46 46 H 1.08994 * 109.62877 * 291.48287 * 26 8 7 47 47 H 1.08998 * 109.49436 * 67.29881 * 27 5 4 48 48 H 1.08991 * 109.51775 * 307.22618 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9711 0.4768 -1.2106 6 6 5.4369 0.4201 -1.2889 7 6 5.8482 -0.4764 -2.4616 8 7 5.1788 0.0091 -3.6780 9 6 5.8797 0.2516 -4.8033 10 8 7.0920 0.1604 -4.7960 11 7 5.2366 0.5951 -5.9369 12 6 5.9449 0.7171 -7.1295 13 6 7.0376 -0.1139 -7.3756 14 6 7.7332 -0.0036 -8.5436 15 6 7.3520 0.9600 -9.4977 16 6 8.0705 1.0844 -10.7063 17 1 8.1319 2.0420 -11.2020 18 6 8.7030 -0.0327 -11.2622 19 7 8.4567 -1.2276 -10.7881 20 14 9.8993 0.1808 -12.6808 21 1 10.0025 1.6207 -13.0288 22 1 11.2357 -0.3298 -12.2826 23 1 9.4102 -0.5789 -13.8593 24 6 6.2505 1.7994 -9.2395 25 6 5.5618 1.6741 -8.0692 26 6 3.7242 0.2224 -3.6338 27 6 3.3965 1.0914 -2.4148 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8554 0.6282 0.8816 34 1 3.9788 2.1802 0.0189 35 1 5.8350 0.0103 -0.3606 36 1 5.8320 1.4243 -1.4425 37 1 6.9290 -0.4311 -2.5955 38 1 5.5470 -1.5043 -2.2599 39 1 4.2804 0.7573 -5.9218 40 1 7.3310 -0.8495 -6.6415 41 1 8.5765 -0.6506 -8.7346 42 1 8.8950 -2.0022 -11.1737 43 1 5.9527 2.5408 -9.9663 44 1 4.7174 2.3171 -7.8696 45 1 3.4008 0.7297 -4.5427 46 1 3.2159 -0.7378 -3.5462 47 1 3.8200 2.0862 -2.5529 48 1 2.3150 1.1687 -2.3036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104985858.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:49 Heat of formation + Delta-G solvation = -22.442887 kcal Electronic energy + Delta-G solvation = -28401.014125 eV Core-core repulsion = 24456.731768 eV Total energy + Delta-G solvation = -3944.282358 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.39033 -39.00651 -37.84049 -37.05089 -34.64585 -34.47020 -32.90595 -31.32648 -30.34209 -29.44289 -28.84483 -27.11133 -26.06816 -24.72977 -24.05190 -22.49866 -21.44238 -21.18581 -20.43163 -18.99058 -18.12863 -17.24189 -16.83803 -16.67561 -16.43831 -15.67544 -15.46932 -15.15928 -15.04231 -14.99591 -14.60540 -14.41793 -13.95362 -13.86458 -13.55743 -13.11986 -12.78086 -12.64542 -12.42215 -12.18134 -12.07990 -11.96154 -11.76801 -11.65165 -11.51505 -11.40589 -11.25855 -11.07920 -10.99906 -10.90991 -10.63081 -9.98447 -9.86163 -9.65062 -9.42292 -9.13455 -8.86960 -8.76154 -8.34441 -7.46880 -6.85956 -6.62197 -4.24975 2.69301 2.91770 3.10715 3.12613 3.17897 3.18956 3.39003 3.59054 3.76254 4.00322 4.24879 4.51942 4.62604 4.73250 4.78710 4.81187 4.90773 4.98102 5.00797 5.06261 5.09842 5.14609 5.26043 5.35853 5.37435 5.49048 5.50761 5.69522 5.74087 5.76749 5.97044 6.17893 6.40360 6.50937 6.63356 6.77045 6.86153 6.86716 6.95805 7.10142 7.17487 7.33898 7.38613 7.67939 7.86135 8.05634 8.12550 8.32332 8.48692 8.70177 8.96225 8.97897 9.15329 10.30626 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.031844 B = 0.002058 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.082042 B =13600.324294 C =13971.225266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.372 6.372 3 C 0.059 3.941 4 C 0.057 3.943 5 N -0.526 5.526 6 C 0.042 3.958 7 C 0.137 3.863 8 N -0.636 5.636 9 C 0.699 3.301 10 O -0.575 6.575 11 N -0.668 5.668 12 C 0.022 3.978 13 C -0.090 4.090 14 C -0.145 4.145 15 C 0.102 3.898 16 C -0.461 4.461 17 H 0.077 0.923 18 C 0.072 3.928 19 N -0.802 5.802 20 Si 0.910 3.090 21 H -0.262 1.262 22 H -0.273 1.273 23 H -0.276 1.276 24 C -0.209 4.209 25 C -0.112 4.112 26 C 0.119 3.881 27 C 0.038 3.962 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.086 0.914 36 H 0.038 0.962 37 H 0.097 0.903 38 H 0.070 0.930 39 H 0.389 0.611 40 H 0.102 0.898 41 H 0.121 0.879 42 H 0.278 0.722 43 H 0.096 0.904 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.037 0.963 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.931 2.953 20.082 24.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.290 6.290 3 C -0.018 4.018 4 C -0.071 4.071 5 N -0.252 5.252 6 C -0.087 4.087 7 C 0.013 3.987 8 N -0.376 5.376 9 C 0.402 3.598 10 O -0.452 6.452 11 N -0.315 5.315 12 C -0.071 4.071 13 C -0.110 4.110 14 C -0.165 4.165 15 C 0.100 3.900 16 C -0.492 4.492 17 H 0.095 0.905 18 C -0.145 4.145 19 N -0.428 5.428 20 Si 0.735 3.265 21 H -0.186 1.186 22 H -0.198 1.198 23 H -0.201 1.201 24 C -0.229 4.229 25 C -0.133 4.133 26 C -0.005 4.005 27 C -0.091 4.091 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.224 0.776 40 H 0.120 0.880 41 H 0.138 0.862 42 H 0.089 0.911 43 H 0.114 0.886 44 H 0.107 0.893 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.055 0.945 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.026 1.970 20.065 24.004 hybrid contribution -0.099 1.210 -0.622 1.364 sum -13.125 3.180 19.443 23.673 Atomic orbital electron populations 1.22748 0.81547 1.02813 0.99633 1.88035 1.18961 1.26819 1.95233 1.22659 0.93490 0.85557 1.00118 1.22151 0.93412 0.97357 0.94189 1.61913 1.08758 1.53011 1.01468 1.22541 0.87246 0.99445 0.99478 1.21460 0.98839 0.96849 0.81540 1.47311 1.07302 1.71493 1.11503 1.15889 0.85276 0.78719 0.79943 1.90911 1.11526 1.58945 1.83811 1.42305 1.10354 1.72424 1.06462 1.17021 1.00798 1.02538 0.86705 1.20455 0.95783 0.97774 0.96971 1.21013 1.01213 1.02167 0.92058 1.17673 0.89597 0.90541 0.92224 1.19528 1.27836 0.95901 1.05888 0.90531 1.25889 0.95718 0.94717 0.98137 1.69831 1.35743 0.98985 1.38281 0.86235 0.80215 0.79569 0.80485 1.18553 1.19844 1.20103 1.20572 0.98940 1.05615 0.97777 1.19992 1.00593 0.97034 0.95666 1.21636 0.81423 1.00228 0.97196 1.22569 1.00399 0.95872 0.90250 0.94443 0.94225 0.89584 0.92992 0.93014 0.89596 0.93400 0.89557 0.94342 0.88442 0.91153 0.77583 0.87968 0.86154 0.91080 0.88612 0.89327 0.90312 0.90578 0.94511 0.89405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.33 10.59 -35.23 -0.37 -3.70 16 3 C 0.06 0.41 5.53 37.16 0.21 0.61 16 4 C 0.06 0.43 5.52 -3.82 -0.02 0.41 16 5 N -0.53 -5.06 4.62 -234.31 -1.08 -6.14 16 6 C 0.04 0.42 5.62 -3.70 -0.02 0.40 16 7 C 0.14 1.72 6.61 -3.60 -0.02 1.70 16 8 N -0.64 -9.14 3.01 -178.19 -0.54 -9.68 16 9 C 0.70 13.30 8.02 -86.92 -0.70 12.61 16 10 O -0.58 -13.36 13.51 5.30 0.07 -13.28 16 11 N -0.67 -12.48 5.22 -14.10 -0.07 -12.56 16 12 C 0.02 0.51 6.28 -83.57 -0.52 -0.02 16 13 C -0.09 -2.31 8.57 -39.79 -0.34 -2.65 16 14 C -0.14 -3.97 8.60 -39.26 -0.34 -4.31 16 15 C 0.10 2.80 5.54 -106.80 -0.59 2.21 16 16 C -0.46 -12.50 9.04 -37.86 -0.34 -12.84 16 17 H 0.08 1.99 7.87 -52.49 -0.41 1.57 16 18 C 0.07 1.85 5.24 -17.34 -0.09 1.76 16 19 N -0.80 -21.41 10.90 55.54 0.61 -20.81 16 20 Si 0.91 19.23 29.57 -169.99 -5.03 14.20 16 21 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 24 C -0.21 -5.16 9.74 -39.26 -0.38 -5.54 16 25 C -0.11 -2.52 9.89 -39.79 -0.39 -2.91 16 26 C 0.12 1.29 6.54 -3.60 -0.02 1.27 16 27 C 0.04 0.35 5.23 -3.70 -0.02 0.33 16 28 H 0.04 0.18 8.14 -51.92 -0.42 -0.24 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.33 6.10 -51.93 -0.32 0.01 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.09 0.72 8.11 -51.93 -0.42 0.30 16 36 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.10 1.39 7.04 -51.93 -0.37 1.02 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.39 5.81 6.35 -40.82 -0.26 5.55 16 40 H 0.10 2.66 6.44 -52.49 -0.34 2.33 16 41 H 0.12 3.44 6.28 -52.49 -0.33 3.11 16 42 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 43 H 0.10 2.19 8.06 -52.48 -0.42 1.77 16 44 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 45 H 0.08 0.77 5.73 -51.93 -0.30 0.47 16 46 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 47 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.09 0.70 5.75 -51.93 -0.30 0.40 16 LS Contribution 381.21 15.07 5.74 5.74 Total: -1.00 -32.62 381.21 -10.41 -43.03 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -7.25 Total: 8.87 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -2.49 Total: -5.68 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -1.09 Total: -49.18 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.30 Total: -16.98 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.62 -10.41 -43.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104985858.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.583 kcal (2) G-P(sol) polarization free energy of solvation -32.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds