Wall clock time and date at job start Tue Mar 31 2020 17:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 113.99930 * 2 1 4 4 C 1.53008 * 109.46954 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.46942 * 61.02240 * 4 3 2 6 6 C 1.46901 * 111.00260 * 176.23756 * 5 4 3 7 7 C 1.53236 * 109.34177 * 172.74263 * 6 5 4 8 8 N 1.47084 * 108.52038 * 53.83093 * 7 6 5 9 9 C 1.34769 * 120.88054 * 128.83606 * 8 7 6 10 10 O 1.21580 * 120.00391 * 354.81019 * 9 8 7 11 11 N 1.34781 * 119.99982 * 174.80345 * 9 8 7 12 12 C 1.39241 * 120.00118 * 186.31726 * 11 9 8 13 13 C 1.39473 * 119.83184 * 33.56905 * 12 11 9 14 14 C 1.36384 * 120.16595 * 179.75979 * 13 12 11 15 15 C 1.40862 * 119.82718 * 0.51134 * 14 13 12 16 16 C 1.41159 * 120.16410 * 179.71837 * 15 14 13 17 17 H 1.08000 * 119.99747 * 209.63913 * 16 15 14 18 18 C 1.39890 * 120.00007 * 29.64441 * 16 15 14 19 19 N 1.30888 * 119.99958 * 10.94279 * 18 16 15 20 20 Si 1.86792 * 120.00215 * 190.94857 * 18 16 15 21 21 H 1.48498 * 109.47290 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47425 * 119.99919 * 20 18 16 23 23 H 1.48503 * 109.47149 * 239.99751 * 20 18 16 24 24 C 1.40871 * 119.67409 * 359.74410 * 15 14 13 25 25 C 1.36376 * 119.82836 * 0.02562 * 24 15 14 26 26 C 1.47083 * 118.23454 * 308.80853 * 8 7 6 27 27 C 1.46899 * 111.00118 * 51.92948 * 5 4 3 28 28 H 1.09010 * 109.47095 * 300.00248 * 1 2 3 29 29 H 1.08996 * 109.47499 * 59.99625 * 1 2 3 30 30 H 1.08995 * 109.47466 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47271 * 60.00341 * 3 2 1 32 32 H 1.08997 * 109.47531 * 299.99871 * 3 2 1 33 33 H 1.08995 * 109.46945 * 301.01615 * 4 3 2 34 34 H 1.09005 * 109.47143 * 181.01637 * 4 3 2 35 35 H 1.09004 * 109.48942 * 52.77839 * 6 5 4 36 36 H 1.09006 * 109.48593 * 292.70649 * 6 5 4 37 37 H 1.09001 * 109.62530 * 173.53858 * 7 6 5 38 38 H 1.08996 * 109.62879 * 293.92450 * 7 6 5 39 39 H 0.97000 * 119.99586 * 6.32354 * 11 9 8 40 40 H 1.07993 * 119.91822 * 0.02562 * 13 12 11 41 41 H 1.07999 * 120.08620 * 180.25779 * 14 13 12 42 42 H 0.96997 * 120.00042 * 179.97438 * 19 18 16 43 43 H 1.08004 * 120.08624 * 179.97438 * 24 15 14 44 44 H 1.07994 * 119.91611 * 179.97438 * 25 24 15 45 45 H 1.09002 * 109.62326 * 170.89647 * 26 8 7 46 46 H 1.08994 * 109.62877 * 291.48287 * 26 8 7 47 47 H 1.08998 * 109.49436 * 67.29881 * 27 5 4 48 48 H 1.08991 * 109.51775 * 307.22618 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9711 0.4768 -1.2106 6 6 5.4369 0.4201 -1.2889 7 6 5.8482 -0.4764 -2.4616 8 7 5.1788 0.0091 -3.6780 9 6 5.8797 0.2516 -4.8033 10 8 7.0920 0.1604 -4.7960 11 7 5.2366 0.5951 -5.9369 12 6 5.9449 0.7171 -7.1295 13 6 7.0376 -0.1139 -7.3756 14 6 7.7332 -0.0036 -8.5436 15 6 7.3520 0.9600 -9.4977 16 6 8.0705 1.0844 -10.7063 17 1 8.1319 2.0420 -11.2020 18 6 8.7030 -0.0327 -11.2622 19 7 8.4567 -1.2276 -10.7881 20 14 9.8993 0.1808 -12.6808 21 1 10.0025 1.6207 -13.0288 22 1 11.2357 -0.3298 -12.2826 23 1 9.4102 -0.5789 -13.8593 24 6 6.2505 1.7994 -9.2395 25 6 5.5618 1.6741 -8.0692 26 6 3.7242 0.2224 -3.6338 27 6 3.3965 1.0914 -2.4148 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8554 0.6282 0.8816 34 1 3.9788 2.1802 0.0189 35 1 5.8350 0.0103 -0.3606 36 1 5.8320 1.4243 -1.4425 37 1 6.9290 -0.4311 -2.5955 38 1 5.5470 -1.5043 -2.2599 39 1 4.2804 0.7573 -5.9218 40 1 7.3310 -0.8495 -6.6415 41 1 8.5765 -0.6506 -8.7346 42 1 8.8950 -2.0022 -11.1737 43 1 5.9527 2.5408 -9.9663 44 1 4.7174 2.3171 -7.8696 45 1 3.4008 0.7297 -4.5427 46 1 3.2159 -0.7378 -3.5462 47 1 3.8200 2.0862 -2.5529 48 1 2.3150 1.1687 -2.3036 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104985858.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:48 Heat of formation + Delta-G solvation = -44.425823 kcal Electronic energy + Delta-G solvation = -28401.967377 eV Core-core repulsion = 24456.731768 eV Total energy + Delta-G solvation = -3945.235609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.73562 -40.04152 -39.12944 -38.21190 -36.23793 -35.75301 -34.65975 -32.30773 -31.44928 -31.15455 -30.54295 -27.98259 -26.89777 -26.30696 -24.93134 -23.66700 -23.13140 -22.52159 -21.76308 -20.36595 -19.43565 -19.19245 -18.03865 -17.43910 -17.35259 -17.05293 -16.55393 -16.31952 -16.27866 -15.84090 -15.75853 -15.46537 -15.30927 -15.13414 -14.86186 -14.55062 -14.32388 -13.92120 -13.70361 -13.62292 -13.28300 -13.19803 -12.89534 -12.80878 -12.78084 -12.69178 -12.42665 -12.33369 -12.28024 -12.11781 -11.65217 -11.61331 -11.51322 -11.23695 -10.99252 -10.68958 -10.48281 -9.82024 -9.44511 -9.24098 -8.75300 -8.53152 -6.26845 0.85923 1.14647 1.39309 1.46241 1.54855 1.64290 2.15972 2.23848 2.77838 2.82200 2.97262 3.01244 3.73797 3.82758 3.90886 3.97481 4.19063 4.20238 4.30366 4.32642 4.42486 4.43486 4.47015 4.51911 4.57084 4.62131 4.67902 4.75393 4.81363 4.83383 4.95194 4.95829 4.97634 5.05199 5.08353 5.16968 5.31064 5.42226 5.49979 5.65246 5.77254 5.97706 6.01916 6.08067 6.13272 6.16334 6.36778 6.38445 6.70543 6.96166 6.99654 7.03248 7.61389 8.40873 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.031844 B = 0.002058 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.082042 B =13600.324294 C =13971.225266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.058 3.942 4 C 0.056 3.944 5 N -0.535 5.535 6 C 0.052 3.948 7 C 0.132 3.868 8 N -0.627 5.627 9 C 0.695 3.305 10 O -0.624 6.624 11 N -0.659 5.659 12 C 0.035 3.965 13 C -0.104 4.104 14 C -0.169 4.169 15 C 0.069 3.931 16 C -0.495 4.495 17 H 0.080 0.920 18 C 0.026 3.974 19 N -0.838 5.838 20 Si 0.986 3.014 21 H -0.255 1.255 22 H -0.270 1.270 23 H -0.265 1.265 24 C -0.214 4.214 25 C -0.105 4.105 26 C 0.114 3.886 27 C 0.044 3.956 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.058 0.942 35 H 0.105 0.895 36 H 0.029 0.971 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.410 0.590 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.285 0.715 43 H 0.113 0.887 44 H 0.135 0.865 45 H 0.092 0.908 46 H 0.084 0.916 47 H 0.033 0.967 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.209 4.278 21.031 26.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C -0.018 4.018 4 C -0.071 4.071 5 N -0.260 5.260 6 C -0.076 4.076 7 C 0.009 3.991 8 N -0.365 5.365 9 C 0.397 3.603 10 O -0.504 6.504 11 N -0.309 5.309 12 C -0.059 4.059 13 C -0.124 4.124 14 C -0.189 4.189 15 C 0.067 3.933 16 C -0.525 4.525 17 H 0.098 0.902 18 C -0.187 4.187 19 N -0.465 5.465 20 Si 0.807 3.193 21 H -0.179 1.179 22 H -0.194 1.194 23 H -0.190 1.190 24 C -0.234 4.234 25 C -0.125 4.125 26 C -0.009 4.009 27 C -0.085 4.085 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.047 0.953 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.250 0.750 40 H 0.107 0.893 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.131 0.869 44 H 0.153 0.847 45 H 0.110 0.890 46 H 0.102 0.898 47 H 0.051 0.949 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.392 3.302 21.076 26.306 hybrid contribution 0.467 0.776 -0.709 1.151 sum -14.924 4.079 20.367 25.577 Atomic orbital electron populations 1.22862 0.80328 1.03326 1.00551 1.87990 1.20434 1.27994 1.95455 1.22725 0.92740 0.85122 1.01244 1.22216 0.94155 0.97631 0.93124 1.61918 1.08007 1.53781 1.02338 1.22413 0.88021 0.98303 0.98909 1.21588 0.97652 0.98035 0.81800 1.47368 1.08813 1.69940 1.10388 1.16094 0.84878 0.78396 0.80929 1.90885 1.13950 1.60840 1.84774 1.42072 1.11210 1.72434 1.05146 1.17068 0.99586 1.01155 0.88048 1.20449 0.97225 0.98556 0.96201 1.20879 1.01574 1.03098 0.93344 1.18013 0.91128 0.91556 0.92647 1.19795 1.29644 0.96598 1.06502 0.90231 1.26810 0.96994 0.93997 1.00853 1.69915 1.36826 0.99883 1.39878 0.85095 0.77463 0.79783 0.76943 1.17861 1.19450 1.19013 1.20862 0.98226 1.05279 0.99043 1.20353 1.01194 0.96704 0.94273 1.21930 0.78829 1.01309 0.98837 1.22538 1.01513 0.95027 0.89395 0.93343 0.93451 0.89390 0.91374 0.92332 0.89450 0.92423 0.87651 0.95276 0.90678 0.90300 0.75041 0.89314 0.88628 0.90504 0.86881 0.84722 0.88975 0.89781 0.94910 0.87419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.40 -6.14 10.59 -148.98 -1.58 -7.72 16 3 C 0.06 0.63 5.53 71.98 0.40 1.03 16 4 C 0.06 0.70 5.52 86.31 0.48 1.18 16 5 N -0.54 -8.97 4.62 -895.24 -4.14 -13.10 16 6 C 0.05 0.97 5.62 86.38 0.49 1.46 16 7 C 0.13 3.27 6.61 86.35 0.57 3.84 16 8 N -0.63 -17.33 3.01 -835.93 -2.52 -19.85 16 9 C 0.69 26.25 8.02 179.06 1.44 27.68 16 10 O -0.62 -29.85 13.51 -3.97 -0.05 -29.91 16 11 N -0.66 -23.71 5.22 -316.79 -1.65 -25.36 16 12 C 0.04 1.62 6.28 38.56 0.24 1.86 16 13 C -0.10 -5.55 8.57 22.13 0.19 -5.36 16 14 C -0.17 -9.75 8.60 22.48 0.19 -9.56 16 15 C 0.07 3.89 5.54 -21.28 -0.12 3.77 16 16 C -0.50 -27.57 9.04 23.39 0.21 -27.36 16 17 H 0.08 4.21 7.87 -2.91 -0.02 4.19 16 18 C 0.03 1.38 5.24 85.23 0.45 1.83 16 19 N -0.84 -46.49 10.90 21.82 0.24 -46.25 16 20 Si 0.99 40.02 29.57 68.60 2.03 42.05 16 21 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 22 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 23 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 24 C -0.21 -10.46 9.74 22.48 0.22 -10.24 16 25 C -0.10 -4.50 9.89 22.14 0.22 -4.29 16 26 C 0.11 2.17 6.54 86.35 0.57 2.74 16 27 C 0.04 0.69 5.23 86.39 0.45 1.14 16 28 H 0.05 0.35 8.14 -2.38 -0.02 0.33 16 29 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.55 6.10 -2.39 -0.01 0.53 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.11 1.56 8.11 -2.38 -0.02 1.54 16 36 H 0.03 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.07 2.21 7.04 -2.39 -0.02 2.19 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.41 11.08 6.35 -92.71 -0.59 10.49 16 40 H 0.09 4.89 6.44 -2.91 -0.02 4.88 16 41 H 0.10 5.87 6.28 -2.91 -0.02 5.85 16 42 H 0.28 14.33 8.30 -92.71 -0.77 13.56 16 43 H 0.11 5.03 8.06 -2.91 -0.02 5.01 16 44 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 45 H 0.09 1.50 5.73 -2.39 -0.01 1.48 16 46 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.11 1.32 5.75 -2.39 -0.01 1.31 16 Total: -1.00 -74.02 381.21 -0.05 -74.08 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: 0.38 Total: 34.83 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 7.23 Total: -8.77 kcal Atomic # 7 Polarization: -96.50 SS G_CDS: -8.07 Total: -104.56 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: -1.63 Total: -37.62 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Total: -74.02 -0.05 -74.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104985858.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.649 kcal (2) G-P(sol) polarization free energy of solvation -74.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds