Wall clock time and date at job start Tue Mar 31 2020 17:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99999 * 2 1 4 4 C 1.53003 * 109.47024 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46745 * 177.90220 * 4 3 2 6 6 C 1.53003 * 110.01512 * 300.86356 * 5 4 3 7 7 N 1.46496 * 109.46995 * 305.14978 * 6 5 4 8 8 S 1.65601 * 119.99465 * 165.49799 * 7 6 5 9 9 O 1.42105 * 104.27650 * 181.07206 * 8 7 6 10 10 O 1.42101 * 104.28007 * 308.92940 * 8 7 6 11 11 C 1.81403 * 104.44864 * 65.00184 * 8 7 6 12 12 C 1.53005 * 109.46898 * 179.97438 * 11 8 7 13 13 C 1.53003 * 109.47237 * 179.97438 * 12 11 8 14 14 C 1.50692 * 109.47416 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00262 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99928 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00254 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99868 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47338 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47201 * 119.99862 * 18 16 14 21 21 H 1.48502 * 109.47312 * 239.99687 * 18 16 14 22 22 C 1.54269 * 110.02597 * 179.42393 * 5 4 3 23 23 C 1.54892 * 104.19159 * 217.10161 * 22 5 4 24 24 C 1.54887 * 102.74937 * 37.94891 * 23 22 5 25 25 C 1.53868 * 110.03267 * 62.25771 * 5 4 3 26 26 H 1.08997 * 109.47257 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47517 * 300.00354 * 1 2 3 28 28 H 1.09000 * 109.46970 * 60.00311 * 1 2 3 29 29 H 1.09005 * 109.47017 * 59.99830 * 3 2 1 30 30 H 1.08991 * 109.47105 * 299.99891 * 3 2 1 31 31 H 1.09002 * 109.46970 * 297.89881 * 4 3 2 32 32 H 1.08998 * 109.46666 * 57.90009 * 4 3 2 33 33 H 1.08993 * 109.46779 * 65.15540 * 6 5 4 34 34 H 1.08998 * 109.46545 * 185.15026 * 6 5 4 35 35 H 0.96995 * 120.00327 * 345.49813 * 7 6 5 36 36 H 1.08999 * 109.47174 * 299.99623 * 11 8 7 37 37 H 1.09000 * 109.47301 * 59.99720 * 11 8 7 38 38 H 1.08999 * 109.47050 * 299.99882 * 12 11 8 39 39 H 1.09000 * 109.47223 * 59.99856 * 12 11 8 40 40 H 1.09007 * 109.46693 * 300.00696 * 13 12 11 41 41 H 1.09000 * 109.47007 * 59.99877 * 13 12 11 42 42 H 0.96996 * 119.99844 * 180.02562 * 17 16 14 43 43 H 1.09000 * 110.49027 * 335.77997 * 22 5 4 44 44 H 1.09002 * 110.48312 * 98.42794 * 22 5 4 45 45 H 1.08994 * 110.75627 * 279.62894 * 23 22 5 46 46 H 1.09007 * 110.91267 * 156.33189 * 23 22 5 47 47 H 1.09000 * 110.48539 * 203.38135 * 24 23 22 48 48 H 1.08999 * 110.48994 * 80.72613 * 24 23 22 49 49 H 1.09002 * 110.03591 * 238.56720 * 25 5 4 50 50 H 1.09000 * 110.03816 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1577 2.5814 -0.0522 6 6 3.6939 3.3140 -1.3128 7 7 3.9980 2.4987 -2.4912 8 16 3.3001 2.8582 -3.9493 9 8 3.7977 1.8613 -4.8313 10 8 1.9122 2.9533 -3.6596 11 6 3.9727 4.4859 -4.3840 12 6 3.3966 4.9331 -5.7290 13 6 3.9634 6.3062 -6.0954 14 6 3.3956 6.7470 -7.4198 15 1 2.6997 6.1115 -7.9474 16 6 3.7645 7.9615 -7.9581 17 7 4.6115 8.7356 -7.3155 18 14 3.0611 8.5075 -9.6003 19 1 2.1383 7.4642 -10.1151 20 1 2.3187 9.7813 -9.4219 21 1 4.1675 8.7111 -10.5697 22 6 5.6967 2.4752 -0.0375 23 6 6.1523 3.6797 0.8230 24 6 5.0719 3.7361 1.9315 25 6 3.7605 3.3831 1.1997 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6887 1.8463 -0.8899 31 1 3.8593 0.6767 0.9091 32 1 3.8549 0.6114 -0.8697 33 1 2.6191 3.4867 -1.2578 34 1 4.2120 4.2700 -1.3887 35 1 4.6082 1.7483 -2.4174 36 1 3.7018 5.2083 -3.6141 37 1 5.0584 4.4227 -4.4570 38 1 3.6679 4.2105 -6.4987 39 1 2.3109 4.9962 -5.6563 40 1 3.6918 7.0285 -5.3255 41 1 5.0492 6.2435 -6.1679 42 1 4.8707 9.5902 -7.6941 43 1 6.0100 1.5378 0.4221 44 1 6.0943 2.5569 -1.0491 45 1 6.1505 4.5973 0.2348 46 1 7.1378 3.5001 1.2530 47 1 5.0136 4.7380 2.3567 48 1 5.2843 3.0023 2.7089 49 1 3.2380 4.2945 0.9092 50 1 3.1248 2.7770 1.8452 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124985527.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:10 Heat of formation + Delta-G solvation = -156.096090 kcal Electronic energy + Delta-G solvation = -27819.850277 eV Core-core repulsion = 23972.923482 eV Total energy + Delta-G solvation = -3846.926795 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.181 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.05779 -37.75329 -36.87921 -35.75233 -34.91602 -34.67958 -32.28501 -32.18785 -29.08034 -28.39814 -27.81750 -26.31494 -25.04190 -23.73764 -22.89667 -20.91074 -20.63045 -19.19656 -18.98993 -17.54913 -16.88051 -16.75454 -16.40350 -16.14897 -15.70106 -15.57725 -15.16665 -15.07225 -14.86339 -14.50308 -14.27079 -14.05462 -13.65493 -13.23908 -12.85006 -12.60724 -12.51835 -12.28959 -12.11217 -11.93361 -11.82401 -11.77262 -11.72254 -11.47606 -11.37104 -11.27653 -11.24817 -10.97911 -10.94589 -10.86599 -10.84746 -10.81916 -10.66040 -10.41436 -9.96847 -9.80292 -9.65750 -9.31624 -9.07773 -8.42288 -6.07043 -4.09973 0.47103 2.85874 3.28519 3.36129 3.41139 3.52104 3.94385 4.18156 4.20104 4.31831 4.41609 4.45756 4.77700 4.87586 4.90999 4.98802 5.05893 5.07891 5.13960 5.16809 5.19081 5.25037 5.26385 5.29473 5.31202 5.32845 5.38288 5.48992 5.53303 5.63577 5.65511 5.70809 5.75697 5.81583 5.87408 5.88778 6.04006 6.04468 6.08980 6.25721 6.43785 6.85568 6.91119 6.97485 7.55775 7.65493 7.91203 8.31743 8.96557 9.54917 11.04228 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014348 B = 0.002748 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.045465 B =10187.021561 C =11333.309844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.394 6.394 3 C 0.051 3.949 4 C -0.104 4.104 5 C -0.063 4.063 6 C 0.122 3.878 7 N -1.123 6.123 8 S 2.600 3.400 9 O -0.963 6.963 10 O -0.963 6.963 11 C -0.609 4.609 12 C -0.106 4.106 13 C 0.031 3.969 14 C -0.525 4.525 15 H 0.059 0.941 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.894 3.106 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.118 4.118 23 C -0.126 4.126 24 C -0.124 4.124 25 C -0.120 4.120 26 H 0.084 0.916 27 H 0.039 0.961 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.415 0.585 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.261 0.739 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.064 0.936 49 H 0.071 0.929 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.074 -13.431 21.772 25.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.313 6.313 3 C -0.025 4.025 4 C -0.142 4.142 5 C -0.064 4.064 6 C -0.005 4.005 7 N -0.882 5.882 8 S 2.696 3.304 9 O -0.954 6.954 10 O -0.953 6.953 11 C -0.741 4.741 12 C -0.145 4.145 13 C -0.008 4.008 14 C -0.564 4.564 15 H 0.077 0.923 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.722 3.278 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.155 4.155 23 C -0.164 4.164 24 C -0.161 4.161 25 C -0.158 4.158 26 H 0.102 0.898 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.250 0.750 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.090 0.910 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.634 -13.858 21.298 25.417 hybrid contribution 0.164 0.947 -0.653 1.162 sum -0.471 -12.911 20.645 24.354 Atomic orbital electron populations 1.22742 0.81012 1.02618 1.00209 1.87828 1.19766 1.28235 1.95490 1.22760 0.94052 0.84793 1.00888 1.21563 0.93278 0.96074 1.03247 1.21335 0.96007 0.94734 0.94359 1.21500 1.01142 0.93520 0.84293 1.55728 1.64595 1.43098 1.24793 1.05304 0.74898 0.77482 0.72765 1.93581 1.81377 1.56261 1.64133 1.93556 1.30934 1.87495 1.83291 1.30547 1.12856 1.21175 1.09506 1.21500 1.00185 1.02626 0.90228 1.19063 0.96391 0.88683 0.96626 1.21294 1.26751 1.03325 1.05012 0.92319 1.25021 0.95070 0.96599 0.97708 1.69966 1.33420 1.11369 1.38689 0.86504 0.78984 0.78628 0.83729 1.19586 1.20939 1.20935 1.22504 0.93240 0.98925 1.00860 1.22506 0.98371 0.98542 0.96942 1.22348 0.94621 1.01382 0.97758 1.22328 0.98025 0.99955 0.95485 0.89775 0.94259 0.93635 0.93287 0.92054 0.90934 0.90706 0.90106 0.91195 0.75039 0.85575 0.85287 0.91598 0.91607 0.96147 0.96122 0.92954 0.91078 0.90792 0.91138 0.91530 0.91571 0.91710 0.91048 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.55 10.70 -35.23 -0.38 -4.93 16 3 C 0.05 0.51 5.37 37.16 0.20 0.71 16 4 C -0.10 -0.88 4.12 -26.73 -0.11 -0.99 16 5 C -0.06 -0.47 0.41 -153.39 -0.06 -0.53 16 6 C 0.12 1.09 4.20 -4.04 -0.02 1.07 16 7 N -1.12 -11.62 5.07 -10.62 -0.05 -11.67 16 8 S 2.60 37.58 5.46 -107.50 -0.59 36.99 16 9 O -0.96 -16.96 18.08 -57.54 -1.04 -18.00 16 10 O -0.96 -16.51 17.50 -57.54 -1.01 -17.52 16 11 C -0.61 -9.19 6.07 37.16 0.23 -8.96 16 12 C -0.11 -2.14 5.16 -26.73 -0.14 -2.28 16 13 C 0.03 0.77 4.97 -27.89 -0.14 0.63 16 14 C -0.53 -14.79 9.11 -34.45 -0.31 -15.10 16 15 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 18 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 C -0.12 -0.80 5.64 -25.07 -0.14 -0.94 16 23 C -0.13 -0.82 6.91 -24.74 -0.17 -0.99 16 24 C -0.12 -0.75 6.83 -25.07 -0.17 -0.93 16 25 C -0.12 -0.79 5.60 -25.61 -0.14 -0.93 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.41 6.68 -51.93 -0.35 0.06 16 30 H 0.06 0.69 6.46 -51.93 -0.34 0.36 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.69 6.95 -51.93 -0.36 0.32 16 33 H 0.08 0.77 6.27 -51.93 -0.33 0.44 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.41 3.67 6.94 -34.47 -0.24 3.43 16 36 H 0.13 1.67 8.14 -51.92 -0.42 1.24 16 37 H 0.13 1.74 8.14 -51.92 -0.42 1.32 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.07 0.45 7.85 -51.93 -0.41 0.04 16 44 H 0.07 0.51 7.09 -51.93 -0.37 0.14 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.07 0.46 7.67 -51.93 -0.40 0.06 16 50 H 0.07 0.45 6.49 -51.93 -0.34 0.11 16 LS Contribution 402.40 15.07 6.06 6.06 Total: -1.00 -35.09 402.40 -10.25 -45.35 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -9.00 Total: -0.76 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 0.03 Total: -26.31 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.68 Total: -37.42 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -2.42 Total: -40.45 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 37.58 SS G_CDS: -0.59 Total: 36.99 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.09 -10.25 -45.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124985527.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.749 kcal (2) G-P(sol) polarization free energy of solvation -35.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds