Wall clock time and date at job start Tue Mar 31 2020 17:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35972 * 117.00044 * 2 1 4 4 C 1.38551 * 120.08160 * 0.02562 * 3 2 1 5 5 C 1.38251 * 120.01405 * 179.97438 * 4 3 2 6 6 C 1.38273 * 120.17632 * 359.97438 * 5 4 3 7 7 C 1.38192 * 120.16943 * 0.02562 * 6 5 4 8 8 C 1.38726 * 119.98053 * 359.74568 * 7 6 5 9 9 N 1.40130 * 120.08965 * 180.27296 * 8 7 6 10 10 C 1.34774 * 120.00134 * 325.36784 * 9 8 7 11 11 O 1.21298 * 119.99430 * 4.44960 * 10 9 8 12 12 C 1.50695 * 120.00385 * 184.45248 * 10 9 8 13 13 N 1.46900 * 109.47373 * 179.97438 * 12 10 9 14 14 C 1.46949 * 111.00193 * 293.79995 * 13 12 10 15 15 C 1.53044 * 109.36559 * 176.80894 * 14 13 12 16 16 N 1.46961 * 109.36311 * 58.40474 * 15 14 13 17 17 C 1.46901 * 110.99899 * 176.81342 * 16 15 14 18 18 C 1.50699 * 109.47157 * 293.79349 * 17 16 15 19 19 H 1.08007 * 119.99700 * 0.02562 * 18 17 16 20 20 C 1.37870 * 120.00101 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00118 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99961 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47178 * 60.00083 * 22 20 18 24 24 H 1.48503 * 109.47382 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47598 * 300.00094 * 22 20 18 26 26 C 1.46962 * 110.87750 * 300.67636 * 16 15 14 27 27 C 1.46959 * 110.99590 * 169.99690 * 13 12 10 28 28 H 1.09004 * 109.47042 * 299.99885 * 1 2 3 29 29 H 1.09004 * 109.47118 * 60.00160 * 1 2 3 30 30 H 1.08996 * 109.46973 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.99244 * 359.95050 * 4 3 2 32 32 H 1.07998 * 119.90711 * 179.97438 * 5 4 3 33 33 H 1.08003 * 119.91463 * 179.97438 * 6 5 4 34 34 H 1.08001 * 120.01311 * 179.97438 * 7 6 5 35 35 H 0.97001 * 119.99599 * 145.35983 * 9 8 7 36 36 H 1.09003 * 109.47052 * 300.00112 * 12 10 9 37 37 H 1.09001 * 109.46793 * 59.99322 * 12 10 9 38 38 H 1.09000 * 109.48951 * 296.77983 * 14 13 12 39 39 H 1.09001 * 109.49035 * 56.83930 * 14 13 12 40 40 H 1.08998 * 109.49508 * 298.43517 * 15 14 13 41 41 H 1.09006 * 109.49219 * 178.36316 * 15 14 13 42 42 H 1.08994 * 109.47379 * 53.79326 * 17 16 15 43 43 H 1.09002 * 109.46665 * 173.79897 * 17 16 15 44 44 H 0.97006 * 120.00107 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.48613 * 299.35496 * 26 16 15 46 46 H 1.08998 * 109.50378 * 179.30295 * 26 16 15 47 47 H 1.08999 * 109.49382 * 303.15729 * 27 13 12 48 48 H 1.08994 * 109.48576 * 63.22862 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2934 2.3746 0.0005 5 6 1.9225 3.6057 0.0011 6 6 3.3032 3.6806 0.0016 7 6 4.0615 2.5253 0.0011 8 6 3.4373 1.2864 0.0053 9 7 4.2039 0.1135 0.0106 10 6 5.3771 0.0722 -0.6515 11 8 5.8084 1.0731 -1.1840 12 6 6.1530 -1.2172 -0.7303 13 7 7.3852 -1.0010 -1.5003 14 6 7.0815 -0.6932 -2.9047 15 6 8.3836 -0.3972 -3.6524 16 7 9.2778 -1.5592 -3.5525 17 6 10.5100 -1.3430 -4.3225 18 6 10.1793 -1.2746 -5.7911 19 1 9.1559 -1.3808 -6.1196 20 6 11.1830 -1.0766 -6.7153 21 7 12.4292 -0.9479 -6.3153 22 14 10.7728 -0.9912 -8.5358 23 1 9.8339 0.1332 -8.7794 24 1 12.0185 -0.7727 -9.3142 25 1 10.1399 -2.2655 -8.9610 26 6 9.5816 -1.8671 -2.1480 27 6 8.2793 -2.1630 -1.4002 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2148 2.3195 0.0001 32 1 1.3339 4.5111 0.0011 33 1 3.7903 4.6446 0.0016 34 1 5.1398 2.5868 0.0011 35 1 3.8903 -0.6687 0.4909 36 1 6.4067 -1.5507 0.2760 37 1 5.5459 -1.9770 -1.2225 38 1 6.5839 -1.5469 -3.3648 39 1 6.4283 0.1781 -2.9530 40 1 8.8676 0.4732 -3.2096 41 1 8.1635 -0.1971 -4.7011 42 1 10.9738 -0.4073 -4.0106 43 1 11.1997 -2.1679 -4.1434 44 1 13.1354 -0.8089 -6.9656 45 1 10.0791 -1.0133 -1.6880 46 1 10.2349 -2.7382 -2.0995 47 1 8.4996 -2.3633 -0.3517 48 1 7.7954 -3.0334 -1.8432 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000137085895.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:00 Heat of formation + Delta-G solvation = -17.127552 kcal Electronic energy + Delta-G solvation = -28421.976478 eV Core-core repulsion = 24477.924611 eV Total energy + Delta-G solvation = -3944.051867 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.01361 -39.73798 -38.36032 -37.43498 -35.06552 -34.71314 -32.44645 -30.64700 -30.33629 -30.28997 -28.81577 -27.58882 -26.44418 -24.24155 -23.02216 -22.85012 -22.35511 -21.31944 -20.41259 -19.13739 -18.70864 -17.55222 -17.15086 -16.31458 -16.24328 -15.98059 -15.69381 -15.48797 -15.06546 -14.66771 -14.42955 -14.38402 -14.21543 -14.09793 -13.74899 -13.43948 -13.18890 -13.02079 -12.87849 -12.50981 -12.06041 -11.96648 -11.90244 -11.64965 -11.57725 -11.46333 -11.12365 -10.81812 -10.70206 -10.61192 -10.52563 -10.39690 -10.23571 -9.83728 -9.49068 -9.13280 -8.85591 -8.38023 -8.13961 -8.08384 -7.15350 -5.97046 -3.98179 1.01532 1.14669 2.50481 2.73033 2.91780 3.37761 3.41134 3.44457 3.54891 4.10719 4.47349 4.48538 4.57516 4.60211 4.74377 4.78663 4.97316 5.03013 5.07878 5.08983 5.15907 5.19257 5.31416 5.38276 5.41975 5.55405 5.61436 5.78588 5.85618 5.89645 5.98939 6.00040 6.19415 6.23142 6.27988 6.35854 6.48792 6.54898 6.67504 6.83328 7.01891 7.08646 7.21154 7.31528 7.41395 7.45147 7.85849 8.06771 8.15641 8.27899 8.62222 9.09031 9.65669 11.13841 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017037 B = 0.002258 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.043849 B =12396.993875 C =12906.639379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.319 6.319 3 C 0.098 3.902 4 C -0.193 4.193 5 C -0.099 4.099 6 C -0.137 4.137 7 C -0.085 4.085 8 C 0.123 3.877 9 N -0.671 5.671 10 C 0.514 3.486 11 O -0.497 6.497 12 C 0.039 3.961 13 N -0.522 5.522 14 C 0.054 3.946 15 C 0.071 3.929 16 N -0.540 5.540 17 C 0.194 3.806 18 C -0.506 4.506 19 H 0.062 0.938 20 C 0.055 3.945 21 N -0.899 5.899 22 Si 0.898 3.102 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 C 0.057 3.943 27 C 0.062 3.938 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.128 0.872 34 H 0.149 0.851 35 H 0.411 0.589 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.033 0.967 39 H 0.087 0.913 40 H 0.031 0.969 41 H 0.085 0.915 42 H -0.008 1.008 43 H 0.029 0.971 44 H 0.261 0.739 45 H 0.032 0.968 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.740 2.744 18.480 31.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.233 6.233 3 C 0.051 3.949 4 C -0.212 4.212 5 C -0.117 4.117 6 C -0.155 4.155 7 C -0.105 4.105 8 C 0.028 3.972 9 N -0.318 5.318 10 C 0.301 3.699 11 O -0.369 6.369 12 C -0.092 4.092 13 N -0.248 5.248 14 C -0.074 4.074 15 C -0.058 4.058 16 N -0.265 5.265 17 C 0.069 3.931 18 C -0.545 4.545 19 H 0.080 0.920 20 C -0.146 4.146 21 N -0.539 5.539 22 Si 0.726 3.274 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.202 1.202 26 C -0.072 4.072 27 C -0.065 4.065 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.147 0.853 32 H 0.143 0.857 33 H 0.146 0.854 34 H 0.167 0.833 35 H 0.247 0.753 36 H 0.122 0.878 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.105 0.895 40 H 0.049 0.951 41 H 0.103 0.897 42 H 0.010 0.990 43 H 0.047 0.953 44 H 0.071 0.929 45 H 0.050 0.950 46 H 0.091 0.909 47 H 0.089 0.911 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -24.077 3.238 17.973 30.219 hybrid contribution -0.613 -0.223 -0.756 0.998 sum -24.690 3.015 17.217 30.250 Atomic orbital electron populations 1.23045 0.78168 1.03971 1.01354 1.86018 1.21528 1.26547 1.89182 1.18796 0.90532 0.84955 1.00600 1.21037 0.99788 0.91893 1.08527 1.20940 0.94728 0.96916 0.99165 1.21035 0.93636 0.98409 1.02453 1.21281 1.01743 0.89791 0.97710 1.17087 0.86617 0.87378 1.06097 1.43396 1.21322 1.14101 1.52963 1.20891 0.80194 0.91419 0.77417 1.90700 1.66833 1.35626 1.43741 1.21896 0.92627 0.93465 1.01234 1.61901 1.12160 1.38160 1.12543 1.22428 0.98755 1.00462 0.85723 1.21940 0.91774 0.92007 1.00046 1.62315 1.18644 1.37618 1.07972 1.19688 0.85349 0.95497 0.92587 1.21122 0.93990 1.48609 0.90788 0.92013 1.24985 0.94958 0.95537 0.99150 1.69952 0.99582 1.50014 1.34323 0.86567 0.77479 0.78587 0.84802 1.20264 1.21385 1.20229 1.22045 0.94765 1.00221 0.90189 1.22201 0.93995 0.90772 0.99577 0.92678 0.92600 0.88194 0.85263 0.85748 0.85438 0.83323 0.75286 0.87846 0.91701 0.94878 0.89513 0.95112 0.89662 0.99040 0.95262 0.92919 0.95024 0.90902 0.91067 0.94122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.82 10.06 -19.65 -0.20 -3.01 16 3 C 0.10 0.99 6.70 -39.07 -0.26 0.73 16 4 C -0.19 -1.65 9.04 -39.46 -0.36 -2.00 16 5 C -0.10 -0.84 10.04 -39.56 -0.40 -1.23 16 6 C -0.14 -1.34 10.04 -39.59 -0.40 -1.74 16 7 C -0.09 -1.01 8.70 -39.42 -0.34 -1.35 16 8 C 0.12 1.41 6.32 -83.49 -0.53 0.88 16 9 N -0.67 -6.99 5.19 -9.75 -0.05 -7.04 16 10 C 0.51 6.59 7.38 -10.99 -0.08 6.51 16 11 O -0.50 -8.24 11.76 5.54 0.07 -8.17 16 12 C 0.04 0.45 5.45 -4.98 -0.03 0.42 16 13 N -0.52 -8.15 4.44 -235.92 -1.05 -9.20 16 14 C 0.05 0.96 5.26 -3.77 -0.02 0.94 16 15 C 0.07 1.52 5.43 -3.77 -0.02 1.50 16 16 N -0.54 -12.25 4.70 -235.90 -1.11 -13.36 16 17 C 0.19 5.24 4.72 -4.98 -0.02 5.22 16 18 C -0.51 -14.63 8.47 -34.44 -0.29 -14.92 16 19 H 0.06 1.76 7.13 -52.48 -0.37 1.39 16 20 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 21 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 22 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 C 0.06 1.07 5.61 -3.76 -0.02 1.05 16 27 C 0.06 0.94 5.61 -3.76 -0.02 0.92 16 28 H 0.05 0.21 7.66 -51.93 -0.40 -0.18 16 29 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.13 0.78 6.30 -52.49 -0.33 0.45 16 32 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 33 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 34 H 0.15 1.99 6.19 -52.49 -0.33 1.66 16 35 H 0.41 3.15 8.57 -40.82 -0.35 2.80 16 36 H 0.10 0.90 8.03 -51.93 -0.42 0.48 16 37 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.58 5.85 -51.93 -0.30 1.28 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 1.94 6.79 -51.93 -0.35 1.59 16 42 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 43 H 0.03 0.83 8.03 -51.93 -0.42 0.42 16 44 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 47 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 48 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 384.06 15.07 5.79 5.79 Total: -1.00 -34.50 384.06 -10.17 -44.67 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -7.44 Total: 0.22 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -1.90 Total: -0.45 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -1.47 Total: -56.18 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -0.13 Total: -11.19 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.50 -10.17 -44.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137085895.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.547 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds