Wall clock time and date at job start Tue Mar 31 2020 17:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35972 * 117.00044 * 2 1 4 4 C 1.38551 * 120.08160 * 0.02562 * 3 2 1 5 5 C 1.38251 * 120.01405 * 179.97438 * 4 3 2 6 6 C 1.38273 * 120.17632 * 359.97438 * 5 4 3 7 7 C 1.38192 * 120.16943 * 0.02562 * 6 5 4 8 8 C 1.38726 * 119.98053 * 359.74568 * 7 6 5 9 9 N 1.40130 * 120.08965 * 180.27296 * 8 7 6 10 10 C 1.34774 * 120.00134 * 325.36784 * 9 8 7 11 11 O 1.21298 * 119.99430 * 4.44960 * 10 9 8 12 12 C 1.50695 * 120.00385 * 184.45248 * 10 9 8 13 13 N 1.46900 * 109.47373 * 179.97438 * 12 10 9 14 14 C 1.46949 * 111.00193 * 293.79995 * 13 12 10 15 15 C 1.53044 * 109.36559 * 176.80894 * 14 13 12 16 16 N 1.46961 * 109.36311 * 58.40474 * 15 14 13 17 17 C 1.46901 * 110.99899 * 176.81342 * 16 15 14 18 18 C 1.50699 * 109.47157 * 293.79349 * 17 16 15 19 19 H 1.08007 * 119.99700 * 0.02562 * 18 17 16 20 20 C 1.37870 * 120.00101 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00118 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99961 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47178 * 60.00083 * 22 20 18 24 24 H 1.48503 * 109.47382 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47598 * 300.00094 * 22 20 18 26 26 C 1.46962 * 110.87750 * 300.67636 * 16 15 14 27 27 C 1.46959 * 110.99590 * 169.99690 * 13 12 10 28 28 H 1.09004 * 109.47042 * 299.99885 * 1 2 3 29 29 H 1.09004 * 109.47118 * 60.00160 * 1 2 3 30 30 H 1.08996 * 109.46973 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.99244 * 359.95050 * 4 3 2 32 32 H 1.07998 * 119.90711 * 179.97438 * 5 4 3 33 33 H 1.08003 * 119.91463 * 179.97438 * 6 5 4 34 34 H 1.08001 * 120.01311 * 179.97438 * 7 6 5 35 35 H 0.97001 * 119.99599 * 145.35983 * 9 8 7 36 36 H 1.09003 * 109.47052 * 300.00112 * 12 10 9 37 37 H 1.09001 * 109.46793 * 59.99322 * 12 10 9 38 38 H 1.09000 * 109.48951 * 296.77983 * 14 13 12 39 39 H 1.09001 * 109.49035 * 56.83930 * 14 13 12 40 40 H 1.08998 * 109.49508 * 298.43517 * 15 14 13 41 41 H 1.09006 * 109.49219 * 178.36316 * 15 14 13 42 42 H 1.08994 * 109.47379 * 53.79326 * 17 16 15 43 43 H 1.09002 * 109.46665 * 173.79897 * 17 16 15 44 44 H 0.97006 * 120.00107 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.48613 * 299.35496 * 26 16 15 46 46 H 1.08998 * 109.50378 * 179.30295 * 26 16 15 47 47 H 1.08999 * 109.49382 * 303.15729 * 27 13 12 48 48 H 1.08994 * 109.48576 * 63.22862 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2934 2.3746 0.0005 5 6 1.9225 3.6057 0.0011 6 6 3.3032 3.6806 0.0016 7 6 4.0615 2.5253 0.0011 8 6 3.4373 1.2864 0.0053 9 7 4.2039 0.1135 0.0106 10 6 5.3771 0.0722 -0.6515 11 8 5.8084 1.0731 -1.1840 12 6 6.1530 -1.2172 -0.7303 13 7 7.3852 -1.0010 -1.5003 14 6 7.0815 -0.6932 -2.9047 15 6 8.3836 -0.3972 -3.6524 16 7 9.2778 -1.5592 -3.5525 17 6 10.5100 -1.3430 -4.3225 18 6 10.1793 -1.2746 -5.7911 19 1 9.1559 -1.3808 -6.1196 20 6 11.1830 -1.0766 -6.7153 21 7 12.4292 -0.9479 -6.3153 22 14 10.7728 -0.9912 -8.5358 23 1 9.8339 0.1332 -8.7794 24 1 12.0185 -0.7727 -9.3142 25 1 10.1399 -2.2655 -8.9610 26 6 9.5816 -1.8671 -2.1480 27 6 8.2793 -2.1630 -1.4002 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2148 2.3195 0.0001 32 1 1.3339 4.5111 0.0011 33 1 3.7903 4.6446 0.0016 34 1 5.1398 2.5868 0.0011 35 1 3.8903 -0.6687 0.4909 36 1 6.4067 -1.5507 0.2760 37 1 5.5459 -1.9770 -1.2225 38 1 6.5839 -1.5469 -3.3648 39 1 6.4283 0.1781 -2.9530 40 1 8.8676 0.4732 -3.2096 41 1 8.1635 -0.1971 -4.7011 42 1 10.9738 -0.4073 -4.0106 43 1 11.1997 -2.1679 -4.1434 44 1 13.1354 -0.8089 -6.9656 45 1 10.0791 -1.0133 -1.6880 46 1 10.2349 -2.7382 -2.0995 47 1 8.4996 -2.3633 -0.3517 48 1 7.7954 -3.0334 -1.8432 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000137085895.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:58 Heat of formation + Delta-G solvation = -43.175627 kcal Electronic energy + Delta-G solvation = -28423.106008 eV Core-core repulsion = 24477.924611 eV Total energy + Delta-G solvation = -3945.181397 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.83158 -40.67155 -39.66949 -38.19302 -36.53148 -35.74566 -34.55031 -31.84752 -31.55490 -31.05528 -30.17406 -28.31698 -27.89368 -25.79751 -24.53583 -23.78353 -23.24815 -22.98646 -21.32953 -20.66996 -19.42343 -18.51926 -18.28252 -18.05060 -17.16339 -17.02356 -16.58265 -16.47681 -16.38934 -15.86615 -15.81845 -15.67829 -15.43697 -15.23558 -14.96497 -14.78460 -14.45023 -14.24202 -13.93918 -13.70792 -13.45230 -13.08645 -13.05554 -12.87134 -12.70686 -12.62608 -12.43890 -12.27798 -12.23170 -12.10048 -12.00831 -11.96197 -11.59398 -11.38328 -11.20767 -10.68337 -10.61221 -9.60713 -9.33350 -9.05822 -8.84393 -8.21710 -6.32321 0.25948 0.41788 1.39233 1.43204 1.51050 1.58675 1.91997 2.31209 2.39242 2.81071 2.95615 3.09951 3.29154 3.67818 3.89705 3.96732 4.01441 4.18587 4.19541 4.28978 4.33310 4.37710 4.41463 4.43538 4.47250 4.50968 4.53916 4.58515 4.69174 4.77924 4.80741 4.88150 4.95102 5.01595 5.06570 5.16087 5.19354 5.26715 5.30903 5.49851 5.59990 5.61938 5.81955 5.91477 5.98314 6.04957 6.30041 6.39941 6.47743 6.61462 6.82640 7.18732 7.37111 8.89455 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017037 B = 0.002258 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.043849 B =12396.993875 C =12906.639379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.331 6.331 3 C 0.096 3.904 4 C -0.193 4.193 5 C -0.094 4.094 6 C -0.149 4.149 7 C -0.107 4.107 8 C 0.097 3.903 9 N -0.656 5.656 10 C 0.511 3.489 11 O -0.544 6.544 12 C 0.043 3.957 13 N -0.540 5.540 14 C 0.073 3.927 15 C 0.075 3.925 16 N -0.542 5.542 17 C 0.209 3.791 18 C -0.526 4.526 19 H 0.061 0.939 20 C 0.000 4.000 21 N -0.934 5.934 22 Si 0.971 3.029 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.266 1.266 26 C 0.051 3.949 27 C 0.073 3.927 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.118 0.882 31 H 0.158 0.842 32 H 0.154 0.846 33 H 0.138 0.862 34 H 0.124 0.876 35 H 0.425 0.575 36 H 0.141 0.859 37 H 0.089 0.911 38 H 0.039 0.961 39 H 0.081 0.919 40 H 0.006 0.994 41 H 0.063 0.937 42 H -0.044 1.044 43 H 0.009 0.991 44 H 0.265 0.735 45 H 0.016 0.984 46 H 0.079 0.921 47 H 0.111 0.889 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.036 1.726 19.212 34.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.245 6.245 3 C 0.048 3.952 4 C -0.212 4.212 5 C -0.113 4.113 6 C -0.167 4.167 7 C -0.127 4.127 8 C 0.002 3.998 9 N -0.303 5.303 10 C 0.299 3.701 11 O -0.420 6.420 12 C -0.087 4.087 13 N -0.266 5.266 14 C -0.056 4.056 15 C -0.053 4.053 16 N -0.267 5.267 17 C 0.082 3.918 18 C -0.564 4.564 19 H 0.079 0.921 20 C -0.198 4.198 21 N -0.574 5.574 22 Si 0.795 3.205 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.190 1.190 26 C -0.078 4.078 27 C -0.054 4.054 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.136 0.864 31 H 0.176 0.824 32 H 0.172 0.828 33 H 0.156 0.844 34 H 0.142 0.858 35 H 0.263 0.737 36 H 0.159 0.841 37 H 0.107 0.893 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.024 0.976 41 H 0.081 0.919 42 H -0.027 1.027 43 H 0.027 0.973 44 H 0.074 0.926 45 H 0.035 0.965 46 H 0.097 0.903 47 H 0.129 0.871 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -27.428 2.188 18.756 33.299 hybrid contribution 0.334 0.121 -0.882 0.951 sum -27.094 2.309 17.873 32.540 Atomic orbital electron populations 1.23347 0.76171 1.05604 1.02316 1.86000 1.23576 1.25979 1.88965 1.18882 0.90127 0.86031 1.00112 1.21419 1.01230 0.91294 1.07221 1.21297 0.94198 0.98236 0.97548 1.21249 0.94600 0.98253 1.02634 1.21209 1.00861 0.91176 0.99460 1.17264 0.87630 0.87361 1.07543 1.43218 1.20473 1.14435 1.52219 1.21199 0.80618 0.91341 0.76921 1.90696 1.68107 1.37230 1.45947 1.22015 0.90943 0.93123 1.02609 1.61760 1.14617 1.39045 1.11161 1.22099 0.95867 1.00470 0.87124 1.21857 0.93329 0.90836 0.99299 1.62268 1.16566 1.37655 1.10198 1.19352 0.86712 0.92730 0.92972 1.21414 0.94122 1.48998 0.91870 0.92076 1.25948 0.94672 0.94738 1.04393 1.70085 1.00664 1.50537 1.36162 0.85412 0.77578 0.79095 0.78384 1.19478 1.20583 1.19032 1.22222 0.97652 0.99774 0.88144 1.22155 0.91543 0.90545 1.01168 0.91223 0.92032 0.86391 0.82419 0.82844 0.84414 0.85810 0.73687 0.84121 0.89345 0.94312 0.90077 0.97559 0.91862 1.02675 0.97327 0.92611 0.96523 0.90266 0.87108 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -5.10 10.06 -93.23 -0.94 -6.04 16 3 C 0.10 1.77 6.70 22.60 0.15 1.92 16 4 C -0.19 -2.81 9.04 22.35 0.20 -2.61 16 5 C -0.09 -1.41 10.04 22.28 0.22 -1.18 16 6 C -0.15 -2.89 10.04 22.27 0.22 -2.67 16 7 C -0.11 -2.63 8.70 22.38 0.19 -2.43 16 8 C 0.10 2.18 6.32 38.18 0.24 2.42 16 9 N -0.66 -13.04 5.19 -303.13 -1.57 -14.61 16 10 C 0.51 12.75 7.38 87.66 0.65 13.40 16 11 O -0.54 -18.62 11.76 -3.08 -0.04 -18.66 16 12 C 0.04 0.88 5.45 85.56 0.47 1.35 16 13 N -0.54 -16.13 4.44 -900.31 -4.00 -20.13 16 14 C 0.07 2.59 5.26 86.31 0.45 3.05 16 15 C 0.08 3.39 5.43 86.31 0.47 3.86 16 16 N -0.54 -25.40 4.70 -900.26 -4.23 -29.63 16 17 C 0.21 11.89 4.72 85.56 0.40 12.29 16 18 C -0.53 -31.37 8.47 25.60 0.22 -31.16 16 19 H 0.06 3.58 7.13 -2.91 -0.02 3.56 16 20 C 0.00 0.03 5.46 84.65 0.46 0.49 16 21 N -0.93 -58.26 13.29 21.44 0.28 -57.98 16 22 Si 0.97 45.92 29.54 68.60 2.03 47.94 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 25 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 26 C 0.05 1.92 5.61 86.31 0.48 2.40 16 27 C 0.07 2.03 5.61 86.31 0.48 2.52 16 28 H 0.07 0.30 7.66 -2.38 -0.02 0.29 16 29 H 0.06 0.38 7.66 -2.39 -0.02 0.36 16 30 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.16 1.31 6.30 -2.91 -0.02 1.29 16 32 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 33 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 34 H 0.12 3.61 6.19 -2.91 -0.02 3.60 16 35 H 0.42 5.69 8.57 -92.71 -0.79 4.90 16 36 H 0.14 1.83 8.03 -2.39 -0.02 1.82 16 37 H 0.09 1.46 8.12 -2.39 -0.02 1.44 16 38 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.08 3.03 5.85 -2.39 -0.01 3.02 16 40 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.06 3.05 6.79 -2.38 -0.02 3.03 16 42 H -0.04 -2.79 8.12 -2.39 -0.02 -2.81 16 43 H 0.01 0.52 8.03 -2.39 -0.02 0.50 16 44 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 45 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.08 2.87 8.07 -2.39 -0.02 2.85 16 47 H 0.11 2.26 8.07 -2.39 -0.02 2.25 16 48 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -79.18 384.06 -1.86 -81.04 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.17 Total: 13.18 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 6.43 Total: 4.89 kcal Atomic # 7 Polarization: -112.83 SS G_CDS: -9.52 Total: -122.35 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.97 Total: -24.70 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Total: -79.18 -1.86 -81.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137085895.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.868 kcal (2) G-P(sol) polarization free energy of solvation -79.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds