Wall clock time and date at job start Tue Mar 31 2020 17:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 119.99714 * 2 1 4 4 O 1.21283 * 120.00031 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99821 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.46831 * 179.97438 * 5 3 2 7 7 N 1.46507 * 109.46880 * 179.97438 * 6 5 3 8 8 C 1.46497 * 120.00126 * 270.00207 * 7 6 5 9 9 C 1.34775 * 119.99725 * 90.00665 * 7 6 5 10 10 O 1.21596 * 120.00015 * 359.97438 * 9 7 6 11 11 N 1.34771 * 120.00181 * 179.97438 * 9 7 6 12 12 C 1.46500 * 120.00556 * 179.97438 * 11 9 7 13 13 H 1.09009 * 109.46624 * 324.99750 * 12 11 9 14 14 C 1.52996 * 109.47466 * 205.00158 * 12 11 9 15 15 C 1.50702 * 109.47159 * 64.99479 * 14 12 11 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 12 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.50700 * 109.47471 * 84.99708 * 12 11 9 24 24 C 1.38233 * 119.99377 * 39.72808 * 23 12 11 25 25 C 1.38237 * 119.99600 * 179.78842 * 24 23 12 26 26 C 1.38241 * 119.99990 * 0.44354 * 25 24 23 27 27 C 1.38237 * 119.99716 * 359.81238 * 26 25 24 28 28 C 1.38228 * 120.00326 * 220.00479 * 23 12 11 29 29 H 1.09009 * 109.46729 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47060 * 299.99548 * 1 2 3 31 31 H 1.08999 * 109.47456 * 60.00178 * 1 2 3 32 32 H 0.96998 * 120.00649 * 180.02562 * 2 1 3 33 33 H 1.09008 * 109.47021 * 60.00416 * 5 3 2 34 34 H 1.08992 * 109.47375 * 300.00104 * 5 3 2 35 35 H 1.08997 * 109.47279 * 60.00601 * 6 5 3 36 36 H 1.08992 * 109.47766 * 299.99913 * 6 5 3 37 37 H 1.09000 * 109.46930 * 269.99920 * 8 7 6 38 38 H 1.09004 * 109.47278 * 30.00401 * 8 7 6 39 39 H 1.09000 * 109.46593 * 150.00226 * 8 7 6 40 40 H 0.97002 * 120.00072 * 359.97438 * 11 9 7 41 41 H 1.09004 * 109.47066 * 304.99682 * 14 12 11 42 42 H 1.08994 * 109.47405 * 184.99512 * 14 12 11 43 43 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 44 44 H 1.07995 * 120.00514 * 359.97438 * 24 23 12 45 45 H 1.08001 * 120.00058 * 180.28006 * 25 24 23 46 46 H 1.07995 * 120.00194 * 179.83256 * 26 25 24 47 47 H 1.08001 * 119.99824 * 180.02562 * 27 26 25 48 48 H 1.08005 * 119.99906 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6458 1.1673 -0.0006 6 6 4.1557 2.6098 -0.0011 7 7 5.6208 2.6099 -0.0011 8 6 6.3532 2.6103 1.2677 9 6 6.2946 2.6096 -1.1683 10 8 5.6866 2.6088 -2.2213 11 7 7.6423 2.6102 -1.1683 12 6 8.3749 2.6093 -2.4370 13 1 7.8277 2.0188 -3.1720 14 6 9.7623 2.0004 -2.2245 15 6 9.6211 0.5489 -1.8446 16 1 8.6399 0.1050 -1.7633 17 6 10.7448 -0.2140 -1.6069 18 7 11.9396 0.3266 -1.7062 19 14 10.5700 -2.0150 -1.1435 20 1 9.1306 -2.3774 -1.0995 21 1 11.2609 -2.8555 -2.1542 22 1 11.1796 -2.2443 0.1911 23 6 8.5183 4.0243 -2.9354 24 6 8.7867 5.0467 -2.0447 25 6 8.9225 6.3441 -2.5024 26 6 8.7808 6.6202 -3.8495 27 6 8.5071 5.5984 -4.7394 28 6 8.3756 4.3005 -4.2822 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.9501 -0.8400 -0.0004 33 1 4.0088 0.6537 -0.8909 34 1 4.0095 0.6533 0.8891 35 1 3.7928 3.1238 0.8889 36 1 3.7921 3.1235 -0.8910 37 1 6.5349 3.6381 1.5819 38 1 5.7642 2.0967 2.0275 39 1 7.3057 2.0965 1.1374 40 1 8.1274 2.6111 -0.3283 41 1 10.2760 2.5365 -1.4264 42 1 10.3392 2.0804 -3.1457 43 1 12.7301 -0.2100 -1.5386 44 1 8.8933 4.8317 -0.9918 45 1 9.1368 7.1423 -1.8071 46 1 8.8843 7.6341 -4.2067 47 1 8.3968 5.8140 -5.7919 48 1 8.1619 3.5022 -4.9775 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178797973.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:57 Heat of formation + Delta-G solvation = -42.949788 kcal Electronic energy + Delta-G solvation = -28796.697736 eV Core-core repulsion = 24851.526132 eV Total energy + Delta-G solvation = -3945.171604 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.15134 -39.59341 -38.61242 -35.83483 -34.92978 -34.74793 -32.83009 -31.90282 -30.56605 -30.27504 -28.72374 -27.45142 -26.29960 -24.95997 -23.42879 -22.23479 -21.90609 -20.64935 -20.05402 -19.33660 -17.84373 -17.39924 -16.76109 -16.23859 -16.13194 -15.75247 -15.73236 -15.20572 -14.67559 -14.57510 -14.52887 -14.06868 -13.76986 -13.33401 -13.29190 -13.17072 -12.93474 -12.65827 -12.61380 -12.57977 -12.46263 -12.14823 -12.13410 -12.08905 -11.52407 -11.12287 -11.03657 -10.89699 -10.71900 -10.58929 -10.41952 -10.07659 -9.76572 -9.60855 -9.35684 -9.27982 -8.62738 -8.50090 -8.44764 -8.22240 -8.11425 -6.10255 -4.13269 1.83748 1.86259 2.51211 2.82872 3.23294 3.24662 3.32330 3.35592 3.69713 4.22511 4.37500 4.48836 4.68730 4.91265 5.00770 5.06597 5.20945 5.24064 5.26435 5.31450 5.32664 5.42191 5.46284 5.51430 5.53334 5.60080 5.73824 5.81579 5.96551 5.99734 6.04899 6.17944 6.20629 6.40754 6.46827 6.61681 6.69631 6.90086 6.90881 6.99998 7.14891 7.23932 7.28439 7.46452 7.51974 7.68755 7.87133 8.04604 8.25765 8.47541 8.92996 9.10965 9.51418 11.00374 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007604 B = 0.003936 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3681.172666 B = 7111.914169 C = 9852.520668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.740 5.740 3 C 0.519 3.481 4 O -0.541 6.541 5 C -0.160 4.160 6 C 0.154 3.846 7 N -0.639 5.639 8 C 0.078 3.922 9 C 0.704 3.296 10 O -0.594 6.594 11 N -0.715 5.715 12 C 0.201 3.799 13 H 0.086 0.914 14 C 0.023 3.977 15 C -0.517 4.517 16 H 0.058 0.942 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.285 1.285 23 C -0.071 4.071 24 C -0.106 4.106 25 C -0.126 4.126 26 C -0.136 4.136 27 C -0.123 4.123 28 C -0.108 4.108 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.403 0.597 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.397 0.603 41 H 0.024 0.976 42 H 0.035 0.965 43 H 0.261 0.739 44 H 0.115 0.885 45 H 0.114 0.886 46 H 0.113 0.887 47 H 0.115 0.885 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.846 3.514 5.596 15.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.392 5.392 3 C 0.306 3.694 4 O -0.418 6.418 5 C -0.201 4.201 6 C 0.030 3.970 7 N -0.377 5.377 8 C -0.066 4.066 9 C 0.405 3.595 10 O -0.472 6.472 11 N -0.368 5.368 12 C 0.096 3.904 13 H 0.104 0.896 14 C -0.014 4.014 15 C -0.555 4.555 16 H 0.076 0.924 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.072 4.072 24 C -0.124 4.124 25 C -0.144 4.144 26 C -0.154 4.154 27 C -0.141 4.141 28 C -0.126 4.126 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.237 0.763 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.232 0.768 41 H 0.042 0.958 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.133 0.867 45 H 0.132 0.868 46 H 0.131 0.869 47 H 0.133 0.867 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.523 4.235 4.837 15.883 hybrid contribution 0.549 -1.587 0.759 1.843 sum -13.974 2.649 5.596 15.284 Atomic orbital electron populations 1.21519 0.79813 1.02078 1.02287 1.45865 1.07761 1.08989 1.76597 1.20701 0.90197 0.83463 0.75046 1.90705 1.70684 1.31244 1.49140 1.22106 0.91201 1.01649 1.05140 1.20874 0.78047 0.93920 1.04168 1.47013 1.06006 1.79550 1.05137 1.21733 0.97503 1.01586 0.85747 1.15962 0.82405 0.77665 0.83440 1.90878 1.67984 1.58475 1.29879 1.45286 1.03648 1.77700 1.10214 1.20117 0.95845 0.90118 0.84317 0.89615 1.19398 0.88161 0.95502 0.98336 1.21173 0.92671 0.94774 1.46925 0.92357 1.24993 0.95323 0.98357 0.95529 1.69971 0.97510 1.36217 1.49367 0.86554 0.78121 0.85365 0.78054 1.19819 1.21006 1.21079 1.20597 0.96278 0.96753 0.93571 1.20877 0.99732 0.92403 0.99434 1.21034 1.01226 0.96526 0.95605 1.20983 1.02084 0.98630 0.93676 1.21034 1.00838 0.93110 0.99160 1.21009 0.99698 0.96513 0.95392 0.90781 0.92316 0.92244 0.76324 0.88009 0.88839 0.90268 0.89114 0.92866 0.91275 0.90693 0.76758 0.95806 0.94684 0.92943 0.86727 0.86827 0.86908 0.86662 0.86211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 10.70 59.85 0.64 1.30 16 2 N -0.74 -6.53 5.71 -67.08 -0.38 -6.91 16 3 C 0.52 6.26 7.83 -10.99 -0.09 6.18 16 4 O -0.54 -8.47 15.98 5.56 0.09 -8.39 16 5 C -0.16 -1.82 6.02 -27.88 -0.17 -1.99 16 6 C 0.15 2.07 4.70 -4.04 -0.02 2.05 16 7 N -0.64 -9.15 2.87 -187.35 -0.54 -9.68 16 8 C 0.08 0.84 10.20 59.85 0.61 1.45 16 9 C 0.70 12.95 8.24 -86.92 -0.72 12.24 16 10 O -0.59 -13.02 15.59 5.28 0.08 -12.94 16 11 N -0.71 -13.07 3.89 -59.81 -0.23 -13.30 16 12 C 0.20 4.13 2.12 -69.08 -0.15 3.98 16 13 H 0.09 1.94 7.44 -51.92 -0.39 1.55 16 14 C 0.02 0.56 4.50 -27.88 -0.13 0.43 16 15 C -0.52 -13.44 8.84 -34.44 -0.30 -13.75 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -25.22 13.29 55.43 0.74 -24.49 16 19 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.07 -1.34 4.91 -104.63 -0.51 -1.86 16 24 C -0.11 -1.84 9.33 -39.58 -0.37 -2.21 16 25 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 26 C -0.14 -2.00 10.05 -39.58 -0.40 -2.40 16 27 C -0.12 -1.93 10.05 -39.59 -0.40 -2.32 16 28 C -0.11 -1.93 9.67 -39.59 -0.38 -2.31 16 29 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.40 2.49 8.83 -40.82 -0.36 2.13 16 33 H 0.10 1.30 8.14 -51.92 -0.42 0.88 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.94 8.03 -51.93 -0.42 0.52 16 36 H 0.09 1.48 7.38 -51.93 -0.38 1.09 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 39 H 0.07 0.85 6.36 -51.93 -0.33 0.52 16 40 H 0.40 6.64 6.33 -40.82 -0.26 6.38 16 41 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.11 1.86 7.71 -52.49 -0.40 1.45 16 45 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 46 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 47 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 48 H 0.12 2.06 8.04 -52.48 -0.42 1.63 16 LS Contribution 404.39 15.07 6.09 6.09 Total: -1.00 -34.27 404.39 -9.62 -43.89 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -7.57 Total: 10.23 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -2.87 Total: -0.04 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.42 Total: -54.39 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: 0.17 Total: -21.33 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.27 -9.62 -43.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178797973.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.935 kcal (2) G-P(sol) polarization free energy of solvation -34.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds