Wall clock time and date at job start Tue Mar 31 2020 17:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 119.99714 * 2 1 4 4 O 1.21283 * 120.00031 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99821 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.46831 * 179.97438 * 5 3 2 7 7 N 1.46507 * 109.46880 * 179.97438 * 6 5 3 8 8 C 1.46497 * 120.00126 * 270.00207 * 7 6 5 9 9 C 1.34775 * 119.99725 * 90.00665 * 7 6 5 10 10 O 1.21596 * 120.00015 * 359.97438 * 9 7 6 11 11 N 1.34771 * 120.00181 * 179.97438 * 9 7 6 12 12 C 1.46500 * 120.00556 * 179.97438 * 11 9 7 13 13 H 1.09009 * 109.46624 * 324.99750 * 12 11 9 14 14 C 1.52996 * 109.47466 * 205.00158 * 12 11 9 15 15 C 1.50702 * 109.47159 * 64.99479 * 14 12 11 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 12 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.50700 * 109.47471 * 84.99708 * 12 11 9 24 24 C 1.38233 * 119.99377 * 39.72808 * 23 12 11 25 25 C 1.38237 * 119.99600 * 179.78842 * 24 23 12 26 26 C 1.38241 * 119.99990 * 0.44354 * 25 24 23 27 27 C 1.38237 * 119.99716 * 359.81238 * 26 25 24 28 28 C 1.38228 * 120.00326 * 220.00479 * 23 12 11 29 29 H 1.09009 * 109.46729 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47060 * 299.99548 * 1 2 3 31 31 H 1.08999 * 109.47456 * 60.00178 * 1 2 3 32 32 H 0.96998 * 120.00649 * 180.02562 * 2 1 3 33 33 H 1.09008 * 109.47021 * 60.00416 * 5 3 2 34 34 H 1.08992 * 109.47375 * 300.00104 * 5 3 2 35 35 H 1.08997 * 109.47279 * 60.00601 * 6 5 3 36 36 H 1.08992 * 109.47766 * 299.99913 * 6 5 3 37 37 H 1.09000 * 109.46930 * 269.99920 * 8 7 6 38 38 H 1.09004 * 109.47278 * 30.00401 * 8 7 6 39 39 H 1.09000 * 109.46593 * 150.00226 * 8 7 6 40 40 H 0.97002 * 120.00072 * 359.97438 * 11 9 7 41 41 H 1.09004 * 109.47066 * 304.99682 * 14 12 11 42 42 H 1.08994 * 109.47405 * 184.99512 * 14 12 11 43 43 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 44 44 H 1.07995 * 120.00514 * 359.97438 * 24 23 12 45 45 H 1.08001 * 120.00058 * 180.28006 * 25 24 23 46 46 H 1.07995 * 120.00194 * 179.83256 * 26 25 24 47 47 H 1.08001 * 119.99824 * 180.02562 * 27 26 25 48 48 H 1.08005 * 119.99906 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6458 1.1673 -0.0006 6 6 4.1557 2.6098 -0.0011 7 7 5.6208 2.6099 -0.0011 8 6 6.3532 2.6103 1.2677 9 6 6.2946 2.6096 -1.1683 10 8 5.6866 2.6088 -2.2213 11 7 7.6423 2.6102 -1.1683 12 6 8.3749 2.6093 -2.4370 13 1 7.8277 2.0188 -3.1720 14 6 9.7623 2.0004 -2.2245 15 6 9.6211 0.5489 -1.8446 16 1 8.6399 0.1050 -1.7633 17 6 10.7448 -0.2140 -1.6069 18 7 11.9396 0.3266 -1.7062 19 14 10.5700 -2.0150 -1.1435 20 1 9.1306 -2.3774 -1.0995 21 1 11.2609 -2.8555 -2.1542 22 1 11.1796 -2.2443 0.1911 23 6 8.5183 4.0243 -2.9354 24 6 8.7867 5.0467 -2.0447 25 6 8.9225 6.3441 -2.5024 26 6 8.7808 6.6202 -3.8495 27 6 8.5071 5.5984 -4.7394 28 6 8.3756 4.3005 -4.2822 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.9501 -0.8400 -0.0004 33 1 4.0088 0.6537 -0.8909 34 1 4.0095 0.6533 0.8891 35 1 3.7928 3.1238 0.8889 36 1 3.7921 3.1235 -0.8910 37 1 6.5349 3.6381 1.5819 38 1 5.7642 2.0967 2.0275 39 1 7.3057 2.0965 1.1374 40 1 8.1274 2.6111 -0.3283 41 1 10.2760 2.5365 -1.4264 42 1 10.3392 2.0804 -3.1457 43 1 12.7301 -0.2100 -1.5386 44 1 8.8933 4.8317 -0.9918 45 1 9.1368 7.1423 -1.8071 46 1 8.8843 7.6341 -4.2067 47 1 8.3968 5.8140 -5.7919 48 1 8.1619 3.5022 -4.9775 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178797973.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:57 Heat of formation + Delta-G solvation = -65.284572 kcal Electronic energy + Delta-G solvation = -28797.666245 eV Core-core repulsion = 24851.526132 eV Total energy + Delta-G solvation = -3946.140112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.45615 -40.67567 -39.90365 -37.18091 -36.44501 -35.62164 -34.74095 -33.17665 -31.81438 -31.52952 -30.47267 -28.30483 -27.37072 -26.57672 -24.60270 -23.76796 -23.31234 -21.70551 -21.36365 -20.74853 -19.13518 -18.53955 -18.37323 -17.68587 -17.31169 -16.92875 -16.71470 -16.49177 -16.40717 -15.92680 -15.80335 -15.16968 -14.96863 -14.59055 -14.56461 -14.28882 -14.23133 -14.17132 -13.85337 -13.66065 -13.57601 -13.40318 -13.26675 -13.15118 -13.01887 -12.86305 -12.59805 -12.42584 -12.14132 -12.05393 -11.85817 -11.56068 -11.28562 -11.20279 -11.03685 -10.56978 -10.15814 -10.08178 -9.74551 -9.55005 -9.44423 -8.17565 -6.27612 0.52880 0.57500 1.40228 1.43231 1.54385 1.56810 1.67982 2.20487 2.38543 2.42298 2.94276 3.13216 3.21994 3.80828 3.98593 4.02406 4.05126 4.05720 4.22013 4.32674 4.33089 4.44942 4.45847 4.53010 4.60495 4.66585 4.68194 4.74490 4.80875 4.81337 4.92623 4.92928 5.00332 5.14563 5.21272 5.31823 5.41957 5.45227 5.57331 5.62576 5.64178 5.66026 5.80337 5.90019 6.05291 6.18262 6.23316 6.48475 6.84974 7.08474 7.19912 7.41217 7.67136 8.93442 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007604 B = 0.003936 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3681.172666 B = 7111.914169 C = 9852.520668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.727 5.727 3 C 0.517 3.483 4 O -0.583 6.583 5 C -0.149 4.149 6 C 0.155 3.845 7 N -0.630 5.630 8 C 0.072 3.928 9 C 0.700 3.300 10 O -0.636 6.636 11 N -0.710 5.710 12 C 0.218 3.782 13 H 0.055 0.945 14 C 0.039 3.961 15 C -0.525 4.525 16 H 0.054 0.946 17 C 0.010 3.990 18 N -0.927 5.927 19 Si 0.958 3.042 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.098 4.098 24 C -0.120 4.120 25 C -0.126 4.126 26 C -0.131 4.131 27 C -0.125 4.125 28 C -0.134 4.134 29 H 0.110 0.890 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.418 0.582 33 H 0.086 0.914 34 H 0.125 0.875 35 H 0.100 0.900 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.068 0.932 40 H 0.404 0.596 41 H 0.012 0.988 42 H 0.004 0.996 43 H 0.263 0.737 44 H 0.120 0.880 45 H 0.146 0.854 46 H 0.151 0.849 47 H 0.143 0.857 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.518 3.539 7.262 16.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.379 5.379 3 C 0.304 3.696 4 O -0.464 6.464 5 C -0.191 4.191 6 C 0.031 3.969 7 N -0.367 5.367 8 C -0.070 4.070 9 C 0.401 3.599 10 O -0.518 6.518 11 N -0.364 5.364 12 C 0.112 3.888 13 H 0.073 0.927 14 C 0.001 3.999 15 C -0.563 4.563 16 H 0.072 0.928 17 C -0.188 4.188 18 N -0.567 5.567 19 Si 0.784 3.216 20 H -0.191 1.191 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.099 4.099 24 C -0.138 4.138 25 C -0.144 4.144 26 C -0.148 4.148 27 C -0.143 4.143 28 C -0.152 4.152 29 H 0.128 0.872 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.254 0.746 33 H 0.105 0.895 34 H 0.143 0.857 35 H 0.119 0.881 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.120 0.880 39 H 0.087 0.913 40 H 0.241 0.759 41 H 0.030 0.970 42 H 0.022 0.978 43 H 0.072 0.928 44 H 0.138 0.862 45 H 0.164 0.836 46 H 0.168 0.832 47 H 0.161 0.839 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.208 4.220 6.555 17.089 hybrid contribution 0.727 -1.547 0.222 1.724 sum -14.481 2.672 6.777 16.210 Atomic orbital electron populations 1.21678 0.78759 1.04205 1.01442 1.45812 1.08542 1.08726 1.74789 1.20784 0.90385 0.83722 0.74712 1.90688 1.71386 1.32844 1.51445 1.21982 0.90969 1.00269 1.05840 1.20890 0.77289 0.95280 1.03420 1.47027 1.06417 1.78206 1.05071 1.22000 0.97389 1.03102 0.84527 1.16108 0.82157 0.77523 0.84112 1.90843 1.68668 1.60332 1.31922 1.45062 1.03815 1.77857 1.09661 1.19579 0.93490 0.91057 0.84645 0.92664 1.19129 0.89684 0.94928 0.96122 1.21398 0.92482 0.95833 1.46576 0.92799 1.25791 0.94917 1.02696 0.95431 1.70087 0.98267 1.37934 1.50405 0.85504 0.78310 0.79923 0.77906 1.19094 1.21078 1.20033 1.20523 0.98723 0.96122 0.94578 1.21042 1.00179 0.93110 0.99495 1.21439 0.99891 0.96301 0.96731 1.21460 1.00035 1.00098 0.93249 1.21385 0.99786 0.92146 1.00960 1.21174 1.01038 0.97908 0.95101 0.87176 0.92673 0.93619 0.74568 0.89548 0.85696 0.88149 0.92684 0.91261 0.88015 0.91340 0.75861 0.96996 0.97816 0.92774 0.86245 0.83635 0.83161 0.83911 0.86978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.70 127.77 1.37 2.48 16 2 N -0.73 -11.68 5.71 -484.52 -2.77 -14.44 16 3 C 0.52 12.12 7.83 87.66 0.69 12.80 16 4 O -0.58 -18.38 15.98 -3.04 -0.05 -18.43 16 5 C -0.15 -3.27 6.02 29.85 0.18 -3.09 16 6 C 0.16 4.11 4.70 86.38 0.41 4.52 16 7 N -0.63 -17.72 2.87 -864.91 -2.49 -20.21 16 8 C 0.07 1.40 10.20 127.77 1.30 2.70 16 9 C 0.70 26.47 8.24 179.06 1.47 27.95 16 10 O -0.64 -29.32 15.59 -4.02 -0.06 -29.38 16 11 N -0.71 -26.82 3.89 -461.40 -1.79 -28.62 16 12 C 0.22 9.50 2.12 44.24 0.09 9.59 16 13 H 0.06 2.70 7.44 -2.38 -0.02 2.69 16 14 C 0.04 1.95 4.50 29.85 0.13 2.08 16 15 C -0.52 -28.06 8.84 25.60 0.23 -27.83 16 16 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 17 C 0.01 0.55 5.46 84.66 0.46 1.01 16 18 N -0.93 -53.39 13.29 21.45 0.28 -53.11 16 19 Si 0.96 42.31 29.54 68.60 2.03 44.33 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 23 C -0.10 -3.89 4.91 -19.87 -0.10 -3.99 16 24 C -0.12 -4.16 9.33 22.27 0.21 -3.95 16 25 C -0.13 -3.62 10.05 22.27 0.22 -3.39 16 26 C -0.13 -3.53 10.05 22.27 0.22 -3.30 16 27 C -0.12 -3.78 10.05 22.27 0.22 -3.55 16 28 C -0.13 -4.98 9.67 22.27 0.22 -4.76 16 29 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.42 4.21 8.83 -92.71 -0.82 3.39 16 33 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.10 2.24 8.03 -2.39 -0.02 2.22 16 36 H 0.05 1.87 7.38 -2.39 -0.02 1.85 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.10 1.35 8.07 -2.39 -0.02 1.33 16 39 H 0.07 1.45 6.36 -2.39 -0.02 1.44 16 40 H 0.40 13.77 6.33 -92.71 -0.59 13.18 16 41 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 42 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.26 14.31 8.31 -92.70 -0.77 13.54 16 44 H 0.12 3.88 7.71 -2.91 -0.02 3.85 16 45 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 46 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 47 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 48 H 0.11 4.17 8.04 -2.91 -0.02 4.14 16 Total: -1.00 -77.94 404.39 2.05 -75.90 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: -0.44 Total: 34.70 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 7.33 Total: 9.26 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -6.76 Total: -116.38 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -0.11 Total: -47.81 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -77.94 2.05 -75.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178797973.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.612 kcal (2) G-P(sol) polarization free energy of solvation -77.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds