Wall clock time and date at job start Tue Mar 31 2020 17:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99877 * 2 1 4 4 C 1.52997 * 109.47180 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47169 * 181.38946 * 4 3 2 6 6 C 1.52997 * 109.47506 * 59.45084 * 5 4 3 7 7 N 1.46500 * 109.46915 * 60.33632 * 6 5 4 8 8 S 1.65604 * 119.99710 * 164.42996 * 7 6 5 9 9 O 1.42108 * 104.27246 * 181.07351 * 8 7 6 10 10 O 1.42097 * 104.27890 * 308.93181 * 8 7 6 11 11 C 1.81400 * 104.44807 * 65.00587 * 8 7 6 12 12 C 1.52997 * 109.47284 * 179.97438 * 11 8 7 13 13 C 1.50701 * 109.47421 * 179.97438 * 12 11 8 14 14 H 1.08003 * 119.99884 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99872 * 179.97438 * 13 12 11 16 16 N 1.31506 * 120.00304 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99579 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47308 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46890 * 120.00296 * 17 15 13 20 20 H 1.48495 * 109.46970 * 240.00183 * 17 15 13 21 21 C 1.52997 * 109.47227 * 179.45526 * 5 4 3 22 22 C 1.52998 * 109.47580 * 59.99543 * 21 5 4 23 23 C 1.52999 * 109.46939 * 60.00259 * 22 21 5 24 24 C 1.53009 * 109.47043 * 300.00110 * 23 22 21 25 25 C 1.52999 * 109.47000 * 299.45087 * 5 4 3 26 26 H 1.08997 * 109.47294 * 299.99411 * 1 2 3 27 27 H 1.08996 * 109.47820 * 59.99526 * 1 2 3 28 28 H 1.09002 * 109.47233 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46455 * 60.00240 * 3 2 1 30 30 H 1.08994 * 109.47012 * 300.00836 * 3 2 1 31 31 H 1.09003 * 109.47161 * 61.38553 * 4 3 2 32 32 H 1.09005 * 109.47022 * 301.38881 * 4 3 2 33 33 H 1.09000 * 109.47132 * 180.33896 * 6 5 4 34 34 H 1.09000 * 109.46866 * 300.33923 * 6 5 4 35 35 H 0.97001 * 119.99787 * 344.43566 * 7 6 5 36 36 H 1.09002 * 109.46946 * 299.99531 * 11 8 7 37 37 H 1.09001 * 109.47171 * 59.99264 * 11 8 7 38 38 H 1.09002 * 109.46939 * 299.99772 * 12 11 8 39 39 H 1.08996 * 109.47035 * 59.99434 * 12 11 8 40 40 H 0.97004 * 120.00482 * 179.97438 * 16 15 13 41 41 H 1.09004 * 109.47268 * 299.99828 * 21 5 4 42 42 H 1.09001 * 109.47469 * 179.97438 * 21 5 4 43 43 H 1.09001 * 109.46920 * 300.00583 * 22 21 5 44 44 H 1.08997 * 109.47462 * 180.02562 * 22 21 5 45 45 H 1.08994 * 109.47220 * 60.00040 * 23 22 21 46 46 H 1.09004 * 109.47245 * 180.02562 * 23 22 21 47 47 H 1.09003 * 109.46871 * 180.02562 * 24 23 22 48 48 H 1.09000 * 109.46765 * 299.99720 * 24 23 22 49 49 H 1.09004 * 109.47536 * 180.02562 * 25 5 4 50 50 H 1.08997 * 109.47200 * 60.00277 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1576 2.5820 0.0343 6 6 3.6934 3.3157 1.2941 7 7 4.1204 2.5685 2.4796 8 16 4.1047 3.2962 3.9671 9 8 4.5966 2.2979 4.8508 10 8 4.8120 4.5127 3.7696 11 6 2.3505 3.6252 4.2915 12 6 2.2025 4.3044 5.6545 13 6 0.7453 4.5783 5.9238 14 1 -0.0007 4.2965 5.1954 15 6 0.3644 5.1885 7.1000 16 7 1.2727 5.5311 7.9871 17 14 -1.4420 5.5273 7.4340 18 1 -2.2558 5.0476 6.2882 19 1 -1.8590 4.8158 8.6689 20 1 -1.6473 6.9874 7.6107 21 6 5.6827 2.4609 0.0474 22 6 6.1470 1.7273 -1.2124 23 6 5.7084 2.5120 -2.4504 24 6 4.1832 2.6331 -2.4635 25 6 3.7190 3.3667 -1.2037 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6885 1.8463 0.8900 30 1 1.6884 1.8464 -0.8899 31 1 3.8584 0.6656 -0.9030 32 1 3.8557 0.6223 0.8764 33 1 4.1320 4.3133 1.3159 34 1 2.6065 3.3967 1.2876 35 1 4.4124 1.6475 2.3933 36 1 1.9537 4.2787 3.5146 37 1 1.7987 2.6852 4.2925 38 1 2.5993 3.6505 6.4312 39 1 2.7545 5.2442 5.6539 40 1 1.0048 5.9608 8.8145 41 1 5.9953 1.9019 0.9294 42 1 6.1261 3.4564 0.0719 43 1 5.7037 0.7318 -1.2372 44 1 7.2335 1.6406 -1.2028 45 1 6.1516 3.5074 -2.4255 46 1 6.0388 1.9891 -3.3479 47 1 3.8707 3.1917 -3.3458 48 1 3.7399 1.6376 -2.4885 49 1 4.1626 4.3621 -1.1791 50 1 2.6325 3.4530 -1.2131 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186081397.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:13 Heat of formation + Delta-G solvation = -155.621708 kcal Electronic energy + Delta-G solvation = -28426.385352 eV Core-core repulsion = 24579.479128 eV Total energy + Delta-G solvation = -3846.906224 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.181 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.38870 -37.74023 -36.56423 -35.48506 -35.26935 -33.89657 -32.32871 -31.17275 -30.96262 -29.46128 -26.44125 -25.64500 -25.56045 -23.74694 -22.58146 -21.64858 -21.21165 -18.93985 -18.45418 -17.54510 -16.84035 -16.67374 -16.19718 -16.03830 -15.49100 -15.24555 -15.16996 -14.69873 -14.59328 -14.51473 -14.38492 -14.15693 -13.44574 -13.35466 -13.06361 -12.62686 -12.55472 -12.49049 -12.28218 -11.85716 -11.74864 -11.60489 -11.56100 -11.47023 -11.41206 -11.33601 -11.20225 -11.13263 -11.10426 -10.96177 -10.42600 -10.40614 -10.39025 -10.24962 -10.19298 -9.81965 -9.73825 -9.42388 -8.98910 -8.51571 -6.13318 -4.18828 0.81771 3.17435 3.24166 3.31423 3.34525 3.55035 4.23551 4.32544 4.35223 4.38512 4.47670 4.73950 4.75749 4.90358 4.94140 4.96697 5.04956 5.12638 5.15947 5.21973 5.22236 5.23538 5.31466 5.32939 5.38225 5.44392 5.50292 5.50609 5.57889 5.65622 5.69929 5.77632 5.79986 5.83391 5.88645 5.94512 5.96195 6.05330 6.06578 6.21734 6.28852 6.48500 6.98536 7.12313 7.29911 7.36216 7.79671 8.16860 8.84708 9.45953 10.97761 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013202 B = 0.003288 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.397106 B = 8513.606256 C = 9666.628239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.393 6.393 3 C 0.053 3.947 4 C -0.112 4.112 5 C -0.056 4.056 6 C 0.120 3.880 7 N -1.125 6.125 8 S 2.593 3.407 9 O -0.968 6.968 10 O -0.967 6.967 11 C -0.590 4.590 12 C 0.028 3.972 13 C -0.519 4.519 14 H 0.061 0.939 15 C 0.057 3.943 16 N -0.890 5.890 17 Si 0.899 3.101 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.109 4.109 22 C -0.123 4.123 23 C -0.119 4.119 24 C -0.120 4.120 25 C -0.113 4.113 26 H 0.044 0.956 27 H 0.039 0.961 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.412 0.588 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.264 0.736 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.065 0.935 49 H 0.069 0.931 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.147 -8.294 -22.962 24.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.312 6.312 3 C -0.023 4.023 4 C -0.149 4.149 5 C -0.058 4.058 6 C -0.007 4.007 7 N -0.884 5.884 8 S 2.690 3.310 9 O -0.958 6.958 10 O -0.957 6.957 11 C -0.724 4.724 12 C -0.011 4.011 13 C -0.559 4.559 14 H 0.079 0.921 15 C -0.145 4.145 16 N -0.528 5.528 17 Si 0.727 3.273 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.146 4.146 22 C -0.160 4.160 23 C -0.157 4.157 24 C -0.158 4.158 25 C -0.151 4.151 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.102 0.898 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.247 0.753 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.084 0.916 49 H 0.088 0.912 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.032 -8.006 -22.262 24.187 hybrid contribution -1.817 0.038 0.046 1.818 sum 3.215 -7.968 -22.216 23.820 Atomic orbital electron populations 1.22738 0.81032 1.02675 1.00132 1.87846 1.19685 1.28228 1.95461 1.22765 0.94201 0.84707 1.00651 1.21640 0.93056 0.96608 1.03607 1.20656 0.96161 0.94734 0.94234 1.21417 0.99153 0.95754 0.84351 1.55812 1.83539 1.25593 1.23435 1.05518 0.79046 0.74023 0.72384 1.93555 1.79458 1.59295 1.63514 1.93536 1.70555 1.47129 1.84449 1.30448 1.21003 1.10374 1.10542 1.18961 0.99957 0.95786 0.86434 1.21033 0.91271 1.40001 1.03569 0.92054 1.25069 0.98004 0.95415 0.96019 1.69961 1.33172 1.40731 1.08935 0.86424 0.84553 0.78058 0.78304 1.19684 1.20796 1.20790 1.21575 0.93546 1.01533 0.97974 1.21600 1.00512 0.99358 0.94541 1.21534 0.95825 1.00551 0.97756 1.21561 0.95979 1.00903 0.97317 1.21636 1.01008 0.99113 0.93383 0.93732 0.94270 0.89758 0.92554 0.93090 0.90185 0.90860 0.89884 0.91701 0.75350 0.86440 0.86178 0.94848 0.94838 0.92578 0.91358 0.91203 0.91645 0.92055 0.91979 0.92318 0.92068 0.91587 0.91184 0.91452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.35 10.70 -35.23 -0.38 -4.73 16 3 C 0.05 0.50 5.23 37.16 0.19 0.69 16 4 C -0.11 -0.98 3.77 -26.74 -0.10 -1.08 16 5 C -0.06 -0.48 0.31 -154.52 -0.05 -0.53 16 6 C 0.12 1.27 4.67 -4.04 -0.02 1.25 16 7 N -1.13 -14.12 5.21 -10.61 -0.06 -14.17 16 8 S 2.59 45.71 5.46 -107.50 -0.59 45.12 16 9 O -0.97 -20.10 18.08 -57.54 -1.04 -21.14 16 10 O -0.97 -19.76 17.49 -57.54 -1.01 -20.77 16 11 C -0.59 -11.13 6.01 37.16 0.22 -10.91 16 12 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 13 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 14 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 17 Si 0.90 21.12 29.54 -169.99 -5.02 16.09 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 C -0.11 -0.96 4.56 -26.73 -0.12 -1.08 16 22 C -0.12 -0.91 5.65 -26.73 -0.15 -1.06 16 23 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 24 C -0.12 -0.81 5.65 -26.73 -0.15 -0.96 16 25 C -0.11 -0.84 4.39 -26.73 -0.12 -0.96 16 26 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.55 6.34 -51.93 -0.33 0.22 16 30 H 0.05 0.42 6.52 -51.93 -0.34 0.08 16 31 H 0.08 0.67 4.81 -51.93 -0.25 0.42 16 32 H 0.07 0.69 6.63 -51.93 -0.34 0.34 16 33 H 0.08 0.93 7.68 -51.93 -0.40 0.53 16 34 H 0.06 0.61 6.37 -51.93 -0.33 0.28 16 35 H 0.41 4.54 6.46 -34.48 -0.22 4.32 16 36 H 0.12 1.95 8.14 -51.92 -0.42 1.53 16 37 H 0.12 2.06 8.14 -51.92 -0.42 1.63 16 38 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.07 0.64 7.19 -51.93 -0.37 0.27 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.48 6.44 -51.93 -0.33 0.15 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.46 6.42 -51.93 -0.33 0.13 16 49 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.07 0.47 6.47 -51.93 -0.34 0.13 16 LS Contribution 391.02 15.07 5.89 5.89 Total: -1.00 -34.80 391.02 -9.97 -44.77 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -8.63 Total: 1.36 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: 0.11 Total: -26.73 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.68 Total: -39.88 kcal Atomic # 8 Polarization: -44.21 SS G_CDS: -2.42 Total: -46.64 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 45.71 SS G_CDS: -0.59 Total: 45.12 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.80 -9.97 -44.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186081397.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.850 kcal (2) G-P(sol) polarization free energy of solvation -34.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds