Wall clock time and date at job start Tue Mar 31 2020 17:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99877 * 2 1 4 4 C 1.52997 * 109.47180 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47169 * 181.38946 * 4 3 2 6 6 C 1.52997 * 109.47506 * 59.45084 * 5 4 3 7 7 N 1.46500 * 109.46915 * 60.33632 * 6 5 4 8 8 S 1.65604 * 119.99710 * 164.42996 * 7 6 5 9 9 O 1.42108 * 104.27246 * 181.07351 * 8 7 6 10 10 O 1.42097 * 104.27890 * 308.93181 * 8 7 6 11 11 C 1.81400 * 104.44807 * 65.00587 * 8 7 6 12 12 C 1.52997 * 109.47284 * 179.97438 * 11 8 7 13 13 C 1.50701 * 109.47421 * 179.97438 * 12 11 8 14 14 H 1.08003 * 119.99884 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99872 * 179.97438 * 13 12 11 16 16 N 1.31506 * 120.00304 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99579 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47308 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46890 * 120.00296 * 17 15 13 20 20 H 1.48495 * 109.46970 * 240.00183 * 17 15 13 21 21 C 1.52997 * 109.47227 * 179.45526 * 5 4 3 22 22 C 1.52998 * 109.47580 * 59.99543 * 21 5 4 23 23 C 1.52999 * 109.46939 * 60.00259 * 22 21 5 24 24 C 1.53009 * 109.47043 * 300.00110 * 23 22 21 25 25 C 1.52999 * 109.47000 * 299.45087 * 5 4 3 26 26 H 1.08997 * 109.47294 * 299.99411 * 1 2 3 27 27 H 1.08996 * 109.47820 * 59.99526 * 1 2 3 28 28 H 1.09002 * 109.47233 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46455 * 60.00240 * 3 2 1 30 30 H 1.08994 * 109.47012 * 300.00836 * 3 2 1 31 31 H 1.09003 * 109.47161 * 61.38553 * 4 3 2 32 32 H 1.09005 * 109.47022 * 301.38881 * 4 3 2 33 33 H 1.09000 * 109.47132 * 180.33896 * 6 5 4 34 34 H 1.09000 * 109.46866 * 300.33923 * 6 5 4 35 35 H 0.97001 * 119.99787 * 344.43566 * 7 6 5 36 36 H 1.09002 * 109.46946 * 299.99531 * 11 8 7 37 37 H 1.09001 * 109.47171 * 59.99264 * 11 8 7 38 38 H 1.09002 * 109.46939 * 299.99772 * 12 11 8 39 39 H 1.08996 * 109.47035 * 59.99434 * 12 11 8 40 40 H 0.97004 * 120.00482 * 179.97438 * 16 15 13 41 41 H 1.09004 * 109.47268 * 299.99828 * 21 5 4 42 42 H 1.09001 * 109.47469 * 179.97438 * 21 5 4 43 43 H 1.09001 * 109.46920 * 300.00583 * 22 21 5 44 44 H 1.08997 * 109.47462 * 180.02562 * 22 21 5 45 45 H 1.08994 * 109.47220 * 60.00040 * 23 22 21 46 46 H 1.09004 * 109.47245 * 180.02562 * 23 22 21 47 47 H 1.09003 * 109.46871 * 180.02562 * 24 23 22 48 48 H 1.09000 * 109.46765 * 299.99720 * 24 23 22 49 49 H 1.09004 * 109.47536 * 180.02562 * 25 5 4 50 50 H 1.08997 * 109.47200 * 60.00277 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1576 2.5820 0.0343 6 6 3.6934 3.3157 1.2941 7 7 4.1204 2.5685 2.4796 8 16 4.1047 3.2962 3.9671 9 8 4.5966 2.2979 4.8508 10 8 4.8120 4.5127 3.7696 11 6 2.3505 3.6252 4.2915 12 6 2.2025 4.3044 5.6545 13 6 0.7453 4.5783 5.9238 14 1 -0.0007 4.2965 5.1954 15 6 0.3644 5.1885 7.1000 16 7 1.2727 5.5311 7.9871 17 14 -1.4420 5.5273 7.4340 18 1 -2.2558 5.0476 6.2882 19 1 -1.8590 4.8158 8.6689 20 1 -1.6473 6.9874 7.6107 21 6 5.6827 2.4609 0.0474 22 6 6.1470 1.7273 -1.2124 23 6 5.7084 2.5120 -2.4504 24 6 4.1832 2.6331 -2.4635 25 6 3.7190 3.3667 -1.2037 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6885 1.8463 0.8900 30 1 1.6884 1.8464 -0.8899 31 1 3.8584 0.6656 -0.9030 32 1 3.8557 0.6223 0.8764 33 1 4.1320 4.3133 1.3159 34 1 2.6065 3.3967 1.2876 35 1 4.4124 1.6475 2.3933 36 1 1.9537 4.2787 3.5146 37 1 1.7987 2.6852 4.2925 38 1 2.5993 3.6505 6.4312 39 1 2.7545 5.2442 5.6539 40 1 1.0048 5.9608 8.8145 41 1 5.9953 1.9019 0.9294 42 1 6.1261 3.4564 0.0719 43 1 5.7037 0.7318 -1.2372 44 1 7.2335 1.6406 -1.2028 45 1 6.1516 3.5074 -2.4255 46 1 6.0388 1.9891 -3.3479 47 1 3.8707 3.1917 -3.3458 48 1 3.7399 1.6376 -2.4885 49 1 4.1626 4.3621 -1.1791 50 1 2.6325 3.4530 -1.2131 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186081397.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:12 Heat of formation + Delta-G solvation = -180.131419 kcal Electronic energy + Delta-G solvation = -28427.448173 eV Core-core repulsion = 24579.479128 eV Total energy + Delta-G solvation = -3847.969045 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.181 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.08238 -38.46250 -38.13680 -37.00703 -36.20660 -35.89410 -33.13110 -33.11708 -31.59059 -30.15852 -27.59253 -27.10810 -26.43409 -24.42993 -23.58207 -23.19511 -21.86076 -20.30248 -19.22786 -19.03233 -18.33972 -17.54788 -17.38260 -17.03494 -16.89603 -16.53448 -16.23388 -15.94959 -15.64131 -15.37697 -15.17925 -14.98291 -14.81027 -14.47888 -14.09554 -13.81658 -13.72499 -13.40593 -13.28004 -13.17559 -13.08078 -12.96762 -12.94728 -12.77949 -12.63001 -12.45651 -12.25853 -12.12096 -12.10092 -11.97836 -11.84939 -11.82567 -11.71387 -11.17672 -11.01985 -10.92585 -10.81740 -10.65778 -10.48934 -10.21971 -8.26105 -6.40037 -0.65929 1.40738 1.41383 1.54495 1.88105 2.37750 2.81371 2.87600 3.07515 3.27657 3.61329 3.71370 3.82915 3.99758 4.10501 4.13877 4.26531 4.29647 4.31438 4.40357 4.44535 4.54277 4.55774 4.59021 4.62069 4.67637 4.71536 4.75883 4.76541 4.85741 4.89389 4.92141 5.05091 5.10988 5.22612 5.25406 5.27332 5.28521 5.29274 5.35358 5.40755 5.46414 5.56233 5.68474 5.68904 6.06043 6.12538 6.30183 6.73902 7.30200 8.86422 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013202 B = 0.003288 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.397106 B = 8513.606256 C = 9666.628239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.049 3.951 4 C -0.109 4.109 5 C -0.047 4.047 6 C 0.107 3.893 7 N -1.105 6.105 8 S 2.620 3.380 9 O -1.002 7.002 10 O -0.996 6.996 11 C -0.588 4.588 12 C 0.020 3.980 13 C -0.537 4.537 14 H 0.076 0.924 15 C -0.005 4.005 16 N -0.935 5.935 17 Si 0.974 3.026 18 H -0.255 1.255 19 H -0.279 1.279 20 H -0.278 1.278 21 C -0.113 4.113 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.117 4.117 25 C -0.113 4.113 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.422 0.578 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.004 0.996 39 H 0.007 0.993 40 H 0.267 0.733 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.069 0.931 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.512 -8.792 -25.390 26.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C -0.027 4.027 4 C -0.146 4.146 5 C -0.049 4.049 6 C -0.019 4.019 7 N -0.868 5.868 8 S 2.716 3.284 9 O -0.992 6.992 10 O -0.986 6.986 11 C -0.720 4.720 12 C -0.019 4.019 13 C -0.576 4.576 14 H 0.094 0.906 15 C -0.203 4.203 16 N -0.574 5.574 17 Si 0.797 3.203 18 H -0.178 1.178 19 H -0.205 1.205 20 H -0.203 1.203 21 C -0.150 4.150 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.154 4.154 25 C -0.151 4.151 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.111 0.889 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.259 0.741 36 H 0.162 0.838 37 H 0.159 0.841 38 H 0.023 0.977 39 H 0.026 0.974 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.089 0.911 48 H 0.085 0.915 49 H 0.088 0.912 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.391 -8.515 -24.700 26.345 hybrid contribution -1.254 0.168 0.737 1.464 sum 2.137 -8.347 -23.963 25.465 Atomic orbital electron populations 1.22879 0.80053 1.03545 1.00636 1.87815 1.20900 1.29134 1.95594 1.22855 0.94285 0.84360 1.01167 1.21615 0.92938 0.96432 1.03612 1.20585 0.95882 0.94680 0.93721 1.21760 1.00385 0.95601 0.84129 1.55305 1.83257 1.26090 1.22153 1.04428 0.78008 0.73063 0.72864 1.93503 1.79913 1.60118 1.65654 1.93497 1.71060 1.48798 1.85201 1.30337 1.22917 1.11301 1.07464 1.18822 0.98956 0.94672 0.89466 1.21541 0.92469 1.39567 1.03985 0.90554 1.26122 1.03138 0.95176 0.95873 1.70107 1.35807 1.41880 1.09628 0.85266 0.78482 0.77935 0.78571 1.17818 1.20511 1.20345 1.21603 0.93802 1.01193 0.98439 1.21577 1.00630 0.99364 0.94153 1.21533 0.96022 1.00398 0.97634 1.21543 0.95734 1.00946 0.97200 1.21657 1.01609 0.98949 0.92906 0.94062 0.92888 0.88861 0.92967 0.91590 0.89460 0.91673 0.90350 0.89872 0.74057 0.83845 0.84121 0.97725 0.97449 0.92419 0.92302 0.91939 0.91375 0.91951 0.92200 0.91479 0.91105 0.91508 0.91190 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.63 16 2 O -0.41 -8.36 10.70 -148.98 -1.59 -9.96 16 3 C 0.05 0.81 5.23 71.98 0.38 1.19 16 4 C -0.11 -1.68 3.77 30.59 0.12 -1.57 16 5 C -0.05 -0.72 0.31 -52.19 -0.02 -0.74 16 6 C 0.11 2.09 4.67 86.38 0.40 2.49 16 7 N -1.11 -26.60 5.21 -187.49 -0.98 -27.57 16 8 S 2.62 92.55 5.46 -56.49 -0.31 92.24 16 9 O -1.00 -42.27 18.08 -127.65 -2.31 -44.57 16 10 O -1.00 -41.19 17.49 -127.65 -2.23 -43.42 16 11 C -0.59 -21.83 6.01 71.98 0.43 -21.40 16 12 C 0.02 1.03 4.98 29.85 0.15 1.18 16 13 C -0.54 -29.54 9.11 25.60 0.23 -29.30 16 14 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 15 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 16 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 17 Si 0.97 43.03 29.54 68.60 2.03 45.05 16 18 H -0.25 -10.42 7.11 99.48 0.71 -9.71 16 19 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 21 C -0.11 -1.86 4.56 30.59 0.14 -1.72 16 22 C -0.12 -1.59 5.65 30.59 0.17 -1.42 16 23 C -0.12 -1.35 5.92 30.60 0.18 -1.17 16 24 C -0.12 -1.26 5.65 30.60 0.17 -1.08 16 25 C -0.11 -1.40 4.39 30.59 0.13 -1.26 16 26 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.05 0.89 6.34 -2.39 -0.02 0.87 16 30 H 0.07 0.88 6.52 -2.39 -0.02 0.86 16 31 H 0.09 1.25 4.81 -2.39 -0.01 1.24 16 32 H 0.06 1.12 6.63 -2.38 -0.02 1.10 16 33 H 0.08 1.65 7.68 -2.39 -0.02 1.64 16 34 H 0.08 1.35 6.37 -2.39 -0.02 1.34 16 35 H 0.42 8.86 6.46 -96.74 -0.62 8.24 16 36 H 0.14 4.52 8.14 -2.39 -0.02 4.50 16 37 H 0.14 4.61 8.14 -2.39 -0.02 4.59 16 38 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 39 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 41 H 0.06 1.06 7.19 -2.39 -0.02 1.05 16 42 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.07 0.87 6.44 -2.39 -0.02 0.86 16 44 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 47 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.07 0.73 6.42 -2.39 -0.02 0.72 16 49 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 50 H 0.08 0.82 6.47 -2.39 -0.02 0.81 16 Total: -1.00 -75.77 391.02 -0.61 -76.38 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.30 Total: 21.42 kcal Atomic # 6 Polarization: -57.18 SS G_CDS: 4.20 Total: -52.98 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -0.69 Total: -84.17 kcal Atomic # 8 Polarization: -91.81 SS G_CDS: -6.13 Total: -97.95 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: 92.55 SS G_CDS: -0.31 Total: 92.24 kcal Total: -75.77 -0.61 -76.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186081397.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.751 kcal (2) G-P(sol) polarization free energy of solvation -75.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds