Wall clock time and date at job start Tue Mar 31 2020 17:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99923 * 2 1 4 4 C 1.52999 * 109.47139 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47416 * 64.99909 * 4 3 2 6 6 C 1.48561 * 110.99550 * 290.12677 * 5 4 3 7 7 C 1.54382 * 104.59116 * 200.96019 * 6 5 4 8 8 C 1.54263 * 105.06221 * 23.85358 * 7 6 5 9 9 H 1.09000 * 110.32315 * 118.99696 * 8 7 6 10 10 N 1.46499 * 110.32008 * 241.10333 * 8 7 6 11 11 C 1.34772 * 120.00137 * 272.16716 * 10 8 7 12 12 O 1.21586 * 120.00191 * 0.02562 * 11 10 8 13 13 N 1.34777 * 120.00156 * 180.02562 * 11 10 8 14 14 C 1.39247 * 120.00194 * 175.71592 * 13 11 10 15 15 C 1.39482 * 119.83395 * 215.30063 * 14 13 11 16 16 C 1.36368 * 120.17083 * 179.97438 * 15 14 13 17 17 C 1.40876 * 119.82603 * 0.02562 * 16 15 14 18 18 C 1.41153 * 120.16197 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00521 * 215.06142 * 18 17 16 20 20 C 1.39895 * 119.99992 * 34.78517 * 18 17 16 21 21 N 1.30877 * 120.00110 * 355.56002 * 20 18 17 22 22 Si 1.86799 * 119.99969 * 175.55694 * 20 18 17 23 23 H 1.48498 * 109.47156 * 90.00260 * 22 20 18 24 24 H 1.48498 * 109.47116 * 210.00348 * 22 20 18 25 25 H 1.48506 * 109.47420 * 330.00280 * 22 20 18 26 26 C 1.40863 * 119.67357 * 0.25151 * 17 16 15 27 27 C 1.36376 * 119.82531 * 359.44472 * 26 17 16 28 28 C 1.48823 * 110.97238 * 174.70949 * 5 4 3 29 29 H 1.08997 * 109.46782 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47072 * 300.00091 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00741 * 1 2 3 32 32 H 1.09003 * 109.47566 * 59.99598 * 3 2 1 33 33 H 1.09006 * 109.47099 * 299.99864 * 3 2 1 34 34 H 1.08995 * 109.47247 * 304.99227 * 4 3 2 35 35 H 1.09007 * 109.46751 * 184.99911 * 4 3 2 36 36 H 1.08996 * 110.41263 * 82.18567 * 6 5 4 37 37 H 1.09003 * 110.41338 * 319.73501 * 6 5 4 38 38 H 1.09005 * 110.32524 * 264.95611 * 7 6 5 39 39 H 1.08999 * 110.32698 * 142.74736 * 7 6 5 40 40 H 0.97001 * 120.00026 * 92.17620 * 10 8 7 41 41 H 0.96998 * 120.00329 * 355.71159 * 13 11 10 42 42 H 1.08002 * 119.91041 * 359.97438 * 15 14 13 43 43 H 1.07996 * 120.08645 * 180.02562 * 16 15 14 44 44 H 0.97003 * 120.00214 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.08835 * 179.72842 * 26 17 16 46 46 H 1.08005 * 119.91668 * 180.29575 * 27 26 17 47 47 H 1.08993 * 110.45648 * 40.31859 * 28 5 4 48 48 H 1.09007 * 110.49083 * 277.79328 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9769 0.5628 -1.2561 6 6 3.5900 -0.8707 -1.3048 7 6 4.5415 -1.4951 -2.3481 8 6 5.7713 -0.5644 -2.3767 9 1 6.6675 -1.1121 -2.0853 10 7 5.9410 0.0135 -3.7122 11 6 6.6583 -0.6438 -4.6448 12 8 7.1643 -1.7167 -4.3779 13 7 6.8148 -0.1119 -5.8732 14 6 7.6288 -0.7462 -6.8081 15 6 8.3827 0.0146 -7.7015 16 6 9.1826 -0.5995 -8.6195 17 6 9.2457 -2.0061 -8.6644 18 6 10.0708 -2.6492 -9.6121 19 1 9.7586 -3.5837 -10.0542 20 6 11.2904 -2.0730 -9.9830 21 7 11.6267 -0.8967 -9.5181 22 14 12.4390 -2.9825 -11.1419 23 1 12.1216 -2.6127 -12.5446 24 1 13.8444 -2.6115 -10.8380 25 1 12.2641 -4.4465 -10.9642 26 6 8.4769 -2.7678 -7.7627 27 6 7.6864 -2.1393 -6.8462 28 6 5.4622 0.5443 -1.3479 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.6886 1.8465 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8515 0.5684 0.8410 35 1 3.9785 2.1767 0.0889 36 1 2.5535 -0.9741 -1.6258 37 1 3.7356 -1.3372 -0.3305 38 1 4.0641 -1.5219 -3.3277 39 1 4.8338 -2.4992 -2.0409 40 1 5.5371 0.8694 -3.9252 41 1 6.3605 0.7128 -6.1062 42 1 8.3329 1.0929 -7.6661 43 1 9.7660 -0.0090 -9.3104 44 1 12.4726 -0.4973 -9.7750 45 1 8.5168 -3.8466 -7.7941 46 1 7.1000 -2.7218 -6.1510 47 1 5.9006 0.2985 -0.3808 48 1 5.8346 1.5058 -1.7018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265395641.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:39 Heat of formation + Delta-G solvation = -37.935062 kcal Electronic energy + Delta-G solvation = -27850.955968 eV Core-core repulsion = 23906.001819 eV Total energy + Delta-G solvation = -3944.954149 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.17243 -39.16794 -37.93976 -37.15446 -34.57003 -34.09931 -32.87481 -31.69573 -29.50223 -29.16999 -28.84272 -27.68719 -26.49778 -24.75792 -22.97299 -21.93715 -21.12969 -20.98942 -20.39734 -20.00840 -17.95118 -17.19187 -16.97680 -16.89111 -16.55616 -15.87793 -15.38989 -15.27763 -15.05226 -14.74896 -14.31573 -14.11850 -13.94598 -13.80349 -13.17227 -12.95087 -12.88349 -12.63384 -12.23477 -12.12307 -12.03626 -11.96123 -11.75965 -11.62955 -11.35272 -11.26747 -11.12633 -11.09613 -10.94736 -10.87906 -10.65107 -10.01880 -10.00978 -9.46478 -9.37748 -9.15215 -8.91530 -8.80796 -8.67253 -7.45928 -6.75060 -6.54261 -4.26205 2.73720 3.09905 3.13641 3.14899 3.19140 3.25279 3.40622 3.67734 3.78113 4.03896 4.40376 4.48182 4.72426 4.77390 4.79145 4.85638 4.94799 4.99189 5.04091 5.12526 5.14769 5.25911 5.28763 5.33267 5.46207 5.54522 5.66777 5.72858 5.84556 6.00723 6.14075 6.27070 6.49582 6.56740 6.69877 6.76978 6.77146 6.85520 6.95475 7.13123 7.24231 7.35771 7.50815 7.73403 7.95596 8.06105 8.17849 8.39149 8.57876 8.71770 9.00880 9.01704 9.19838 10.36998 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.038450 B = 0.001815 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.052947 B =15422.416836 C =15608.373403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.065 3.935 4 C 0.045 3.955 5 N -0.509 5.509 6 C 0.045 3.955 7 C -0.139 4.139 8 C 0.165 3.835 9 H 0.094 0.906 10 N -0.741 5.741 11 C 0.695 3.305 12 O -0.579 6.579 13 N -0.668 5.668 14 C 0.026 3.974 15 C -0.124 4.124 16 C -0.140 4.140 17 C 0.096 3.904 18 C -0.462 4.462 19 H 0.075 0.925 20 C 0.069 3.931 21 N -0.815 5.815 22 Si 0.914 3.086 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.264 1.264 26 C -0.204 4.204 27 C -0.087 4.087 28 C 0.023 3.977 29 H 0.084 0.916 30 H 0.038 0.962 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.394 0.606 41 H 0.391 0.609 42 H 0.090 0.910 43 H 0.132 0.868 44 H 0.276 0.724 45 H 0.095 0.905 46 H 0.109 0.891 47 H 0.057 0.943 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.524 7.688 17.682 26.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.012 4.012 4 C -0.084 4.084 5 N -0.234 5.234 6 C -0.083 4.083 7 C -0.179 4.179 8 C 0.058 3.942 9 H 0.112 0.888 10 N -0.397 5.397 11 C 0.396 3.604 12 O -0.457 6.457 13 N -0.314 5.314 14 C -0.067 4.067 15 C -0.145 4.145 16 C -0.160 4.160 17 C 0.094 3.906 18 C -0.493 4.493 19 H 0.093 0.907 20 C -0.145 4.145 21 N -0.442 5.442 22 Si 0.739 3.261 23 H -0.196 1.196 24 H -0.204 1.204 25 H -0.188 1.188 26 C -0.224 4.224 27 C -0.107 4.107 28 C -0.105 4.105 29 H 0.103 0.897 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.063 0.937 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.228 0.772 41 H 0.224 0.776 42 H 0.108 0.892 43 H 0.149 0.851 44 H 0.087 0.913 45 H 0.113 0.887 46 H 0.127 0.873 47 H 0.076 0.924 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.983 7.016 17.515 25.386 hybrid contribution 0.349 0.366 0.151 0.528 sum -16.634 7.382 17.666 25.363 Atomic orbital electron populations 1.22716 0.81247 1.02729 0.99839 1.87952 1.19532 1.27827 1.95319 1.22544 0.93210 0.85033 1.00396 1.22304 0.93992 1.00493 0.91604 1.65525 1.09188 1.15798 1.32841 1.23144 1.00382 0.86856 0.97878 1.22881 0.95689 0.99015 1.00295 1.21372 0.98533 0.93035 0.81226 0.88764 1.45156 1.57643 1.24917 1.12005 1.16046 0.79578 0.84330 0.80472 1.90900 1.53432 1.21399 1.79921 1.42126 1.50263 1.28069 1.10956 1.17084 1.01587 0.91514 0.96479 1.20298 0.98406 0.97002 0.98779 1.21169 0.99305 0.95381 1.00189 1.17715 0.90108 0.91868 0.90911 1.19470 1.02171 1.06867 1.20820 0.90717 1.25857 0.98849 0.94565 0.95251 1.69770 1.22103 1.14447 1.37903 0.86217 0.78984 0.80619 0.80237 1.19611 1.20381 1.18783 1.20803 1.04605 0.98081 0.98874 1.20428 0.99757 0.92502 0.98030 1.23465 0.88861 0.99856 0.98337 0.89712 0.94337 0.94015 0.93067 0.92302 0.93679 0.89301 0.89092 0.93749 0.90487 0.90782 0.77166 0.77563 0.89199 0.85088 0.91278 0.88692 0.87326 0.92444 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.22 7.94 -35.23 -0.28 -3.50 16 3 C 0.07 0.44 6.24 37.16 0.23 0.67 16 4 C 0.04 0.32 5.38 -3.83 -0.02 0.30 16 5 N -0.51 -4.55 5.38 -229.74 -1.24 -5.79 16 6 C 0.05 0.44 5.11 -2.18 -0.01 0.43 16 7 C -0.14 -1.60 6.79 -25.35 -0.17 -1.77 16 8 C 0.17 1.96 3.38 -66.55 -0.22 1.73 16 9 H 0.09 1.30 7.60 -51.93 -0.39 0.91 16 10 N -0.74 -9.68 4.99 -57.33 -0.29 -9.97 16 11 C 0.69 12.61 8.39 -86.92 -0.73 11.88 16 12 O -0.58 -13.02 13.43 5.29 0.07 -12.95 16 13 N -0.67 -12.12 5.31 -14.10 -0.07 -12.19 16 14 C 0.03 0.60 6.31 -83.57 -0.53 0.07 16 15 C -0.12 -2.90 9.90 -39.79 -0.39 -3.29 16 16 C -0.14 -3.68 8.62 -39.26 -0.34 -4.02 16 17 C 0.10 2.65 5.55 -106.80 -0.59 2.06 16 18 C -0.46 -12.61 9.02 -37.86 -0.34 -12.95 16 19 H 0.07 1.96 7.85 -52.49 -0.41 1.55 16 20 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 21 N -0.81 -21.63 10.59 55.54 0.59 -21.04 16 22 Si 0.91 19.42 29.56 -169.99 -5.03 14.39 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 25 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 26 C -0.20 -5.30 9.74 -39.26 -0.38 -5.69 16 27 C -0.09 -2.15 8.61 -39.79 -0.34 -2.50 16 28 C 0.02 0.21 6.11 -2.04 -0.01 0.19 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.04 0.34 7.88 -51.93 -0.41 -0.07 16 35 H 0.09 0.50 8.13 -51.93 -0.42 0.08 16 36 H 0.09 0.95 6.80 -51.93 -0.35 0.60 16 37 H 0.04 0.44 7.82 -51.93 -0.41 0.03 16 38 H 0.08 1.00 7.95 -51.93 -0.41 0.58 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.39 4.15 8.60 -40.82 -0.35 3.79 16 41 H 0.39 5.59 8.83 -40.82 -0.36 5.23 16 42 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 43 H 0.13 3.54 6.13 -52.49 -0.32 3.22 16 44 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 45 H 0.09 2.35 8.06 -52.49 -0.42 1.93 16 46 H 0.11 2.68 6.22 -52.48 -0.33 2.36 16 47 H 0.06 0.47 8.00 -51.93 -0.42 0.05 16 48 H 0.09 0.74 8.00 -51.92 -0.42 0.32 16 LS Contribution 387.18 15.07 5.83 5.83 Total: -1.00 -31.92 387.18 -10.76 -42.69 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -7.52 Total: 12.42 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -2.84 Total: -9.90 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -1.01 Total: -48.99 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.21 Total: -16.45 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.92 -10.76 -42.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265395641.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.752 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds