Wall clock time and date at job start Tue Mar 31 2020 17:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99923 * 2 1 4 4 C 1.52999 * 109.47139 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47416 * 64.99909 * 4 3 2 6 6 C 1.48561 * 110.99550 * 290.12677 * 5 4 3 7 7 C 1.54382 * 104.59116 * 200.96019 * 6 5 4 8 8 C 1.54263 * 105.06221 * 23.85358 * 7 6 5 9 9 H 1.09000 * 110.32315 * 118.99696 * 8 7 6 10 10 N 1.46499 * 110.32008 * 241.10333 * 8 7 6 11 11 C 1.34772 * 120.00137 * 272.16716 * 10 8 7 12 12 O 1.21586 * 120.00191 * 0.02562 * 11 10 8 13 13 N 1.34777 * 120.00156 * 180.02562 * 11 10 8 14 14 C 1.39247 * 120.00194 * 175.71592 * 13 11 10 15 15 C 1.39482 * 119.83395 * 215.30063 * 14 13 11 16 16 C 1.36368 * 120.17083 * 179.97438 * 15 14 13 17 17 C 1.40876 * 119.82603 * 0.02562 * 16 15 14 18 18 C 1.41153 * 120.16197 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00521 * 215.06142 * 18 17 16 20 20 C 1.39895 * 119.99992 * 34.78517 * 18 17 16 21 21 N 1.30877 * 120.00110 * 355.56002 * 20 18 17 22 22 Si 1.86799 * 119.99969 * 175.55694 * 20 18 17 23 23 H 1.48498 * 109.47156 * 90.00260 * 22 20 18 24 24 H 1.48498 * 109.47116 * 210.00348 * 22 20 18 25 25 H 1.48506 * 109.47420 * 330.00280 * 22 20 18 26 26 C 1.40863 * 119.67357 * 0.25151 * 17 16 15 27 27 C 1.36376 * 119.82531 * 359.44472 * 26 17 16 28 28 C 1.48823 * 110.97238 * 174.70949 * 5 4 3 29 29 H 1.08997 * 109.46782 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47072 * 300.00091 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00741 * 1 2 3 32 32 H 1.09003 * 109.47566 * 59.99598 * 3 2 1 33 33 H 1.09006 * 109.47099 * 299.99864 * 3 2 1 34 34 H 1.08995 * 109.47247 * 304.99227 * 4 3 2 35 35 H 1.09007 * 109.46751 * 184.99911 * 4 3 2 36 36 H 1.08996 * 110.41263 * 82.18567 * 6 5 4 37 37 H 1.09003 * 110.41338 * 319.73501 * 6 5 4 38 38 H 1.09005 * 110.32524 * 264.95611 * 7 6 5 39 39 H 1.08999 * 110.32698 * 142.74736 * 7 6 5 40 40 H 0.97001 * 120.00026 * 92.17620 * 10 8 7 41 41 H 0.96998 * 120.00329 * 355.71159 * 13 11 10 42 42 H 1.08002 * 119.91041 * 359.97438 * 15 14 13 43 43 H 1.07996 * 120.08645 * 180.02562 * 16 15 14 44 44 H 0.97003 * 120.00214 * 179.97438 * 21 20 18 45 45 H 1.08001 * 120.08835 * 179.72842 * 26 17 16 46 46 H 1.08005 * 119.91668 * 180.29575 * 27 26 17 47 47 H 1.08993 * 110.45648 * 40.31859 * 28 5 4 48 48 H 1.09007 * 110.49083 * 277.79328 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9769 0.5628 -1.2561 6 6 3.5900 -0.8707 -1.3048 7 6 4.5415 -1.4951 -2.3481 8 6 5.7713 -0.5644 -2.3767 9 1 6.6675 -1.1121 -2.0853 10 7 5.9410 0.0135 -3.7122 11 6 6.6583 -0.6438 -4.6448 12 8 7.1643 -1.7167 -4.3779 13 7 6.8148 -0.1119 -5.8732 14 6 7.6288 -0.7462 -6.8081 15 6 8.3827 0.0146 -7.7015 16 6 9.1826 -0.5995 -8.6195 17 6 9.2457 -2.0061 -8.6644 18 6 10.0708 -2.6492 -9.6121 19 1 9.7586 -3.5837 -10.0542 20 6 11.2904 -2.0730 -9.9830 21 7 11.6267 -0.8967 -9.5181 22 14 12.4390 -2.9825 -11.1419 23 1 12.1216 -2.6127 -12.5446 24 1 13.8444 -2.6115 -10.8380 25 1 12.2641 -4.4465 -10.9642 26 6 8.4769 -2.7678 -7.7627 27 6 7.6864 -2.1393 -6.8462 28 6 5.4622 0.5443 -1.3479 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.6886 1.8465 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8515 0.5684 0.8410 35 1 3.9785 2.1767 0.0889 36 1 2.5535 -0.9741 -1.6258 37 1 3.7356 -1.3372 -0.3305 38 1 4.0641 -1.5219 -3.3277 39 1 4.8338 -2.4992 -2.0409 40 1 5.5371 0.8694 -3.9252 41 1 6.3605 0.7128 -6.1062 42 1 8.3329 1.0929 -7.6661 43 1 9.7660 -0.0090 -9.3104 44 1 12.4726 -0.4973 -9.7750 45 1 8.5168 -3.8466 -7.7941 46 1 7.1000 -2.7218 -6.1510 47 1 5.9006 0.2985 -0.3808 48 1 5.8346 1.5058 -1.7018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265395641.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:38 Heat of formation + Delta-G solvation = -60.242900 kcal Electronic energy + Delta-G solvation = -27851.923308 eV Core-core repulsion = 23906.001819 eV Total energy + Delta-G solvation = -3945.921489 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.51581 -40.18081 -39.14027 -38.36876 -36.16066 -35.40512 -34.63605 -32.66242 -31.43644 -30.63632 -29.88035 -28.68326 -27.02405 -26.57862 -23.68089 -23.52123 -22.80883 -21.83805 -21.77581 -21.41109 -19.47430 -19.10171 -18.20672 -17.49210 -17.44962 -17.06963 -16.82267 -16.33644 -16.14370 -15.86706 -15.64071 -15.41958 -15.06917 -14.84124 -14.78951 -14.48096 -13.97756 -13.81352 -13.61664 -13.55614 -13.23015 -13.06053 -12.86870 -12.77739 -12.71470 -12.62605 -12.45742 -12.40858 -12.04975 -11.83883 -11.80161 -11.76875 -11.37507 -11.20356 -10.96580 -10.62196 -10.52089 -10.06603 -9.45297 -9.43068 -8.65429 -8.47105 -6.29323 0.87799 1.17738 1.40658 1.48416 1.55445 1.80474 2.23691 2.27323 2.84197 2.94272 3.00398 3.40363 3.57251 3.71837 3.76773 4.13953 4.20723 4.33465 4.36889 4.42425 4.42628 4.49916 4.56289 4.58766 4.63318 4.71876 4.73673 4.80156 4.90472 4.91939 4.94911 4.96783 5.15721 5.17092 5.18266 5.23175 5.36356 5.47834 5.58093 5.72834 5.82770 5.88573 6.03875 6.07475 6.15839 6.29381 6.30689 6.43457 6.71652 7.00103 7.04565 7.21231 7.71070 8.45635 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.038450 B = 0.001815 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.052947 B =15422.416836 C =15608.373403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.064 3.936 4 C 0.043 3.957 5 N -0.513 5.513 6 C 0.058 3.942 7 C -0.137 4.137 8 C 0.159 3.841 9 H 0.074 0.926 10 N -0.716 5.716 11 C 0.694 3.306 12 O -0.624 6.624 13 N -0.660 5.660 14 C 0.044 3.956 15 C -0.121 4.121 16 C -0.157 4.157 17 C 0.064 3.936 18 C -0.499 4.499 19 H 0.071 0.929 20 C 0.027 3.973 21 N -0.843 5.843 22 Si 0.988 3.012 23 H -0.259 1.259 24 H -0.269 1.269 25 H -0.264 1.264 26 C -0.219 4.219 27 C -0.099 4.099 28 C 0.034 3.966 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.043 0.957 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.412 0.588 41 H 0.414 0.586 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.284 0.716 45 H 0.094 0.906 46 H 0.106 0.894 47 H 0.070 0.930 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.229 9.575 18.802 27.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C -0.013 4.013 4 C -0.085 4.085 5 N -0.237 5.237 6 C -0.070 4.070 7 C -0.177 4.177 8 C 0.053 3.947 9 H 0.092 0.908 10 N -0.373 5.373 11 C 0.394 3.606 12 O -0.505 6.505 13 N -0.308 5.308 14 C -0.051 4.051 15 C -0.141 4.141 16 C -0.177 4.177 17 C 0.061 3.939 18 C -0.530 4.530 19 H 0.089 0.911 20 C -0.184 4.184 21 N -0.471 5.471 22 Si 0.809 3.191 23 H -0.184 1.184 24 H -0.194 1.194 25 H -0.188 1.188 26 C -0.239 4.239 27 C -0.119 4.119 28 C -0.094 4.094 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.127 0.873 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.249 0.751 41 H 0.251 0.749 42 H 0.143 0.857 43 H 0.137 0.863 44 H 0.095 0.905 45 H 0.112 0.888 46 H 0.124 0.876 47 H 0.088 0.912 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.757 8.974 18.673 27.286 hybrid contribution 0.420 -0.162 -0.043 0.452 sum -17.337 8.812 18.629 26.931 Atomic orbital electron populations 1.22819 0.80210 1.03266 1.00525 1.87912 1.20799 1.28822 1.95477 1.22616 0.92903 0.84652 1.01122 1.22419 0.94397 1.01231 0.90428 1.65537 1.08982 1.14923 1.34292 1.22970 0.99432 0.87530 0.97051 1.22809 0.95869 0.98882 1.00104 1.21501 0.97811 0.94307 0.81055 0.90832 1.44953 1.55898 1.24981 1.11426 1.16205 0.79628 0.83878 0.80855 1.90881 1.55341 1.23576 1.80687 1.41897 1.49828 1.28656 1.10388 1.17095 1.00722 0.90954 0.96287 1.20537 0.97137 0.98775 0.97670 1.21157 1.00346 0.94978 1.01209 1.18035 0.91098 0.92854 0.91878 1.19698 1.03616 1.07458 1.22233 0.91065 1.26722 0.99813 0.95316 0.96582 1.69830 1.22876 1.15603 1.38790 0.85112 0.76780 0.78984 0.78213 1.18386 1.19405 1.18795 1.20912 1.05271 0.98254 0.99441 1.20520 0.99896 0.93730 0.97750 1.23404 0.89084 0.99172 0.97754 0.89365 0.93154 0.93779 0.91318 0.92551 0.93827 0.87316 0.89629 0.93727 0.91988 0.91568 0.75128 0.74926 0.85711 0.86275 0.90547 0.88786 0.87585 0.91198 0.87869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -6.14 7.94 -148.98 -1.18 -7.33 16 3 C 0.06 0.71 6.24 71.98 0.45 1.16 16 4 C 0.04 0.50 5.38 86.30 0.46 0.96 16 5 N -0.51 -7.92 5.38 -880.77 -4.74 -12.65 16 6 C 0.06 1.07 5.11 86.45 0.44 1.51 16 7 C -0.14 -3.09 6.79 31.49 0.21 -2.88 16 8 C 0.16 3.59 3.38 45.89 0.15 3.75 16 9 H 0.07 2.01 7.60 -2.39 -0.02 1.99 16 10 N -0.72 -17.42 4.99 -453.54 -2.26 -19.68 16 11 C 0.69 24.42 8.39 179.06 1.50 25.92 16 12 O -0.62 -28.20 13.43 -3.99 -0.05 -28.26 16 13 N -0.66 -22.76 5.31 -316.78 -1.68 -24.44 16 14 C 0.04 1.96 6.31 38.56 0.24 2.21 16 15 C -0.12 -5.53 9.90 22.13 0.22 -5.31 16 16 C -0.16 -8.36 8.62 22.48 0.19 -8.17 16 17 C 0.06 3.62 5.55 -21.28 -0.12 3.50 16 18 C -0.50 -28.15 9.02 23.39 0.21 -27.93 16 19 H 0.07 3.89 7.85 -2.91 -0.02 3.87 16 20 C 0.03 1.42 5.42 85.24 0.46 1.89 16 21 N -0.84 -45.36 10.59 21.82 0.23 -45.13 16 22 Si 0.99 40.04 29.56 68.60 2.03 42.07 16 23 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 24 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 25 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 26 C -0.22 -11.81 9.74 22.48 0.22 -11.59 16 27 C -0.10 -4.96 8.61 22.13 0.19 -4.77 16 28 C 0.03 0.52 6.11 86.40 0.53 1.05 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.04 0.53 7.88 -2.39 -0.02 0.52 16 35 H 0.11 0.83 8.13 -2.38 -0.02 0.81 16 36 H 0.09 1.70 6.80 -2.39 -0.02 1.69 16 37 H 0.04 0.83 7.82 -2.39 -0.02 0.81 16 38 H 0.06 1.58 7.95 -2.38 -0.02 1.57 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.41 7.42 8.60 -92.71 -0.80 6.62 16 41 H 0.41 10.59 8.83 -92.71 -0.82 9.77 16 42 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 43 H 0.12 6.59 6.13 -2.91 -0.02 6.57 16 44 H 0.28 13.86 8.30 -92.71 -0.77 13.10 16 45 H 0.09 4.90 8.06 -2.91 -0.02 4.88 16 46 H 0.11 5.37 6.22 -2.91 -0.02 5.35 16 47 H 0.07 0.95 8.00 -2.39 -0.02 0.93 16 48 H 0.10 1.33 8.00 -2.38 -0.02 1.31 16 Total: -1.00 -71.05 387.18 -1.67 -72.72 By element: Atomic # 1 Polarization: 40.52 SS G_CDS: -0.64 Total: 39.88 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 6.62 Total: -17.18 kcal Atomic # 7 Polarization: -93.46 SS G_CDS: -8.45 Total: -101.90 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -1.24 Total: -35.59 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -71.05 -1.67 -72.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265395641.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.479 kcal (2) G-P(sol) polarization free energy of solvation -71.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds