Wall clock time and date at job start Tue Mar 31 2020 17:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34784 * 119.99673 * 2 1 4 4 O 1.21276 * 120.00310 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99785 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47065 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.46917 * 180.02562 * 6 5 3 8 8 N 1.46500 * 109.47280 * 180.02562 * 7 6 5 9 9 C 1.34778 * 120.00393 * 180.02562 * 8 7 6 10 10 O 1.21584 * 119.99516 * 359.72094 * 9 8 7 11 11 N 1.34776 * 119.99771 * 179.72339 * 9 8 7 12 12 C 1.46498 * 119.99368 * 175.08389 * 11 9 8 13 13 H 1.09003 * 109.47759 * 38.54238 * 12 11 9 14 14 C 1.53005 * 109.46747 * 158.53632 * 12 11 9 15 15 C 1.50696 * 109.47448 * 294.53683 * 14 12 11 16 16 H 1.08007 * 119.99788 * 355.15277 * 15 14 12 17 17 C 1.37876 * 120.00116 * 175.15408 * 15 14 12 18 18 N 1.31517 * 119.99899 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00134 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47323 * 89.99438 * 19 17 15 21 21 H 1.48499 * 109.46806 * 210.00011 * 19 17 15 22 22 H 1.48502 * 109.46758 * 329.99310 * 19 17 15 23 23 C 1.50699 * 109.47612 * 278.53501 * 12 11 9 24 24 C 1.38234 * 119.99949 * 319.73495 * 23 12 11 25 25 C 1.38234 * 120.00402 * 179.78499 * 24 23 12 26 26 C 1.38236 * 119.99559 * 0.43811 * 25 24 23 27 27 C 1.38239 * 119.99927 * 359.81379 * 26 25 24 28 28 C 1.38231 * 120.00002 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47075 * 60.00076 * 1 2 3 30 30 H 1.09000 * 109.47178 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47370 * 299.99985 * 1 2 3 32 32 H 0.96999 * 120.00358 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.47394 * 59.99416 * 5 3 2 34 34 H 1.08998 * 109.46999 * 299.99940 * 5 3 2 35 35 H 1.08999 * 109.46959 * 59.99874 * 6 5 3 36 36 H 1.08998 * 109.47279 * 299.99910 * 6 5 3 37 37 H 1.08999 * 109.47447 * 60.00126 * 7 6 5 38 38 H 1.09001 * 109.47526 * 299.99896 * 7 6 5 39 39 H 0.97007 * 119.99402 * 359.72324 * 8 7 6 40 40 H 0.96993 * 120.00246 * 355.08827 * 11 9 8 41 41 H 1.09004 * 109.47223 * 54.54121 * 14 12 11 42 42 H 1.09002 * 109.46747 * 174.53475 * 14 12 11 43 43 H 0.97001 * 119.99609 * 180.02562 * 18 17 15 44 44 H 1.08006 * 120.00052 * 359.97438 * 24 23 12 45 45 H 1.07993 * 120.00222 * 180.27050 * 25 24 23 46 46 H 1.08006 * 120.00163 * 179.83683 * 26 25 24 47 47 H 1.08000 * 119.99923 * 180.02562 * 27 26 25 48 48 H 1.07998 * 119.99648 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1673 -0.0006 6 6 4.1558 2.6098 -0.0011 7 6 5.6858 2.6098 -0.0023 8 7 6.1741 3.9910 -0.0022 9 6 7.4992 4.2374 -0.0037 10 8 8.2893 3.3132 0.0000 11 7 7.9484 5.5081 -0.0092 12 6 9.3843 5.7777 0.0978 13 1 9.9376 5.0340 -0.4758 14 6 9.6836 7.1731 -0.4537 15 6 9.3917 7.2024 -1.9319 16 1 9.1043 6.2957 -2.4435 17 6 9.4916 8.3865 -2.6310 18 7 9.2373 8.4118 -3.9211 19 14 9.9894 9.9545 -1.7462 20 1 11.4672 10.0960 -1.7834 21 1 9.3632 11.1217 -2.4175 22 1 9.5335 9.8922 -0.3343 23 6 9.8020 5.7091 1.5442 24 6 8.9856 6.2400 2.5253 25 6 9.3665 6.1732 3.8524 26 6 10.5681 5.5834 4.1976 27 6 11.3870 5.0571 3.2161 28 6 11.0039 5.1201 1.8894 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.9500 -0.8400 -0.0004 33 1 4.0089 0.6536 -0.8908 34 1 4.0095 0.6533 0.8891 35 1 3.7928 3.1238 0.8889 36 1 3.7921 3.1235 -0.8910 37 1 6.0484 2.0960 -0.8926 38 1 6.0499 2.0961 0.8874 39 1 5.5437 4.7283 -0.0055 40 1 7.3209 6.2439 -0.0841 41 1 9.0580 7.9068 0.0548 42 1 10.7337 7.4126 -0.2859 43 1 9.3079 9.2449 -4.4131 44 1 8.0486 6.7044 2.2552 45 1 8.7266 6.5841 4.6192 46 1 10.8670 5.5335 5.2343 47 1 12.3256 4.5960 3.4858 48 1 11.6435 4.7086 1.1226 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269629508.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:45 Heat of formation + Delta-G solvation = -56.057129 kcal Electronic energy + Delta-G solvation = -27765.654343 eV Core-core repulsion = 23819.914362 eV Total energy + Delta-G solvation = -3945.739981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.03584 -39.73826 -38.62955 -35.96184 -35.02963 -34.79844 -32.85543 -32.48583 -30.94900 -30.48494 -29.28330 -28.16776 -25.89868 -24.71994 -22.32270 -22.02389 -21.73513 -20.87356 -20.51196 -19.74736 -17.82758 -17.60198 -17.07440 -16.39750 -16.34416 -16.18271 -15.76532 -15.28257 -14.86844 -14.70244 -14.33689 -14.22790 -14.08531 -13.55593 -13.48430 -13.32638 -13.04997 -12.90442 -12.74369 -12.56546 -12.37846 -12.26625 -12.25363 -11.72657 -11.57525 -11.33920 -11.11159 -11.02120 -10.69572 -10.63621 -10.20904 -10.08253 -9.82971 -9.64451 -9.51983 -9.30172 -8.85054 -8.61086 -8.56794 -8.33444 -8.20516 -6.08792 -4.08261 1.72162 1.75254 2.33745 2.80353 3.22646 3.28218 3.35692 3.37528 3.75560 4.15885 4.36410 4.39815 4.63207 4.75103 4.81304 4.86060 5.10425 5.17228 5.21578 5.23221 5.25319 5.30970 5.32703 5.36088 5.41325 5.49488 5.63389 5.86230 5.88486 5.97484 6.00133 6.05078 6.12435 6.28291 6.35228 6.48304 6.77863 6.78272 6.80200 6.89046 6.97539 7.07655 7.09396 7.32357 7.35428 7.52425 7.67966 7.88542 8.46269 8.56714 8.97901 9.14885 9.51951 11.04049 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009637 B = 0.002670 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.679619 B =10484.419782 C =12564.914361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.740 5.740 3 C 0.511 3.489 4 O -0.537 6.537 5 C -0.137 4.137 6 C -0.117 4.117 7 C 0.142 3.858 8 N -0.752 5.752 9 C 0.706 3.294 10 O -0.598 6.598 11 N -0.717 5.717 12 C 0.213 3.787 13 H 0.090 0.910 14 C -0.015 4.015 15 C -0.518 4.518 16 H 0.076 0.924 17 C 0.070 3.930 18 N -0.899 5.899 19 Si 0.875 3.125 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.265 1.265 23 C -0.076 4.076 24 C -0.108 4.108 25 C -0.126 4.126 26 C -0.134 4.134 27 C -0.123 4.123 28 C -0.107 4.107 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.403 0.597 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.395 0.605 40 H 0.398 0.602 41 H 0.025 0.975 42 H 0.029 0.971 43 H 0.263 0.737 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.114 0.886 47 H 0.116 0.884 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.359 -14.961 13.067 22.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.393 5.393 3 C 0.298 3.702 4 O -0.413 6.413 5 C -0.177 4.177 6 C -0.155 4.155 7 C 0.017 3.983 8 N -0.409 5.409 9 C 0.406 3.594 10 O -0.477 6.477 11 N -0.370 5.370 12 C 0.108 3.892 13 H 0.108 0.892 14 C -0.053 4.053 15 C -0.556 4.556 16 H 0.094 0.906 17 C -0.132 4.132 18 N -0.537 5.537 19 Si 0.702 3.298 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.189 1.189 23 C -0.077 4.077 24 C -0.126 4.126 25 C -0.144 4.144 26 C -0.153 4.153 27 C -0.141 4.141 28 C -0.125 4.125 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.077 0.923 32 H 0.236 0.764 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.229 0.771 40 H 0.232 0.768 41 H 0.043 0.957 42 H 0.048 0.952 43 H 0.073 0.927 44 H 0.134 0.866 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.134 0.866 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.081 -14.920 12.908 22.628 hybrid contribution -0.185 1.125 0.257 1.169 sum -11.266 -13.795 13.165 22.148 Atomic orbital electron populations 1.21530 0.79727 1.02149 1.02391 1.45855 1.07829 1.08908 1.76675 1.20818 0.90503 0.83490 0.75382 1.90729 1.70609 1.31279 1.48674 1.21559 0.91344 0.99794 1.05030 1.21530 0.94264 0.95326 1.04410 1.21054 0.92271 0.82872 1.02079 1.45039 1.05806 1.08391 1.81637 1.15936 0.82051 0.83922 0.77522 1.90865 1.54841 1.43580 1.58416 1.45036 1.08780 1.05497 1.77679 1.19792 0.79585 1.00453 0.89399 0.89207 1.19896 0.97440 0.90427 0.97536 1.21024 1.46888 0.96724 0.90942 0.90586 1.24996 0.94713 0.98810 0.94676 1.69911 1.49305 1.27199 1.07302 0.86860 0.79198 0.83324 0.80387 1.20231 1.21408 1.18921 1.20642 0.94394 0.95769 0.96923 1.20923 0.99679 0.99520 0.92463 1.21046 0.96878 1.00397 0.96110 1.21007 0.95254 1.00184 0.98814 1.21055 0.99554 1.00418 0.93108 1.21039 0.96486 0.98820 0.96162 0.92206 0.90719 0.92265 0.76386 0.88290 0.88408 0.90536 0.90335 0.91799 0.91950 0.77105 0.76815 0.95667 0.95247 0.92674 0.86560 0.86765 0.86835 0.86551 0.86017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 10.70 59.84 0.64 1.12 16 2 N -0.74 -4.52 5.71 -67.08 -0.38 -4.90 16 3 C 0.51 4.70 7.83 -10.98 -0.09 4.61 16 4 O -0.54 -7.32 15.98 5.56 0.09 -7.23 16 5 C -0.14 -0.96 5.70 -27.88 -0.16 -1.12 16 6 C -0.12 -1.11 4.62 -26.73 -0.12 -1.23 16 7 C 0.14 1.67 5.67 -4.04 -0.02 1.65 16 8 N -0.75 -10.61 5.56 -65.23 -0.36 -10.98 16 9 C 0.71 13.04 8.47 -86.92 -0.74 12.30 16 10 O -0.60 -13.16 16.04 5.29 0.08 -13.07 16 11 N -0.72 -13.19 4.10 -59.81 -0.24 -13.43 16 12 C 0.21 4.30 2.11 -69.08 -0.15 4.15 16 13 H 0.09 2.02 7.49 -51.93 -0.39 1.63 16 14 C -0.02 -0.35 3.56 -27.88 -0.10 -0.45 16 15 C -0.52 -13.99 9.40 -34.44 -0.32 -14.32 16 16 H 0.08 2.28 7.99 -52.48 -0.42 1.86 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -27.01 13.96 55.43 0.77 -26.24 16 19 Si 0.87 20.98 27.57 -169.99 -4.69 16.29 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.26 -6.04 6.40 56.52 0.36 -5.68 16 23 C -0.08 -1.38 4.86 -104.63 -0.51 -1.88 16 24 C -0.11 -1.76 9.32 -39.58 -0.37 -2.13 16 25 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 26 C -0.13 -1.85 10.05 -39.58 -0.40 -2.25 16 27 C -0.12 -1.80 10.05 -39.58 -0.40 -2.19 16 28 C -0.11 -1.80 9.67 -39.59 -0.38 -2.19 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.40 1.18 8.83 -40.82 -0.36 0.82 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 36 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.40 4.71 8.49 -40.82 -0.35 4.36 16 40 H 0.40 6.70 8.59 -40.82 -0.35 6.35 16 41 H 0.03 0.56 6.86 -51.93 -0.36 0.20 16 42 H 0.03 0.67 7.81 -51.93 -0.41 0.27 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.12 1.78 7.73 -52.48 -0.41 1.37 16 45 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 46 H 0.11 1.25 8.06 -52.48 -0.42 0.82 16 47 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 48 H 0.12 1.97 8.04 -52.49 -0.42 1.55 16 LS Contribution 404.55 15.07 6.10 6.10 Total: -1.00 -36.59 404.55 -9.94 -46.53 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -7.70 Total: 11.21 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -3.61 Total: -4.28 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.22 Total: -55.54 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: 0.17 Total: -20.30 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.69 Total: 16.29 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.59 -9.94 -46.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269629508.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.531 kcal (2) G-P(sol) polarization free energy of solvation -36.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds