Wall clock time and date at job start Tue Mar 31 2020 17:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34784 * 119.99673 * 2 1 4 4 O 1.21276 * 120.00310 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99785 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47065 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.46917 * 180.02562 * 6 5 3 8 8 N 1.46500 * 109.47280 * 180.02562 * 7 6 5 9 9 C 1.34778 * 120.00393 * 180.02562 * 8 7 6 10 10 O 1.21584 * 119.99516 * 359.72094 * 9 8 7 11 11 N 1.34776 * 119.99771 * 179.72339 * 9 8 7 12 12 C 1.46498 * 119.99368 * 175.08389 * 11 9 8 13 13 H 1.09003 * 109.47759 * 38.54238 * 12 11 9 14 14 C 1.53005 * 109.46747 * 158.53632 * 12 11 9 15 15 C 1.50696 * 109.47448 * 294.53683 * 14 12 11 16 16 H 1.08007 * 119.99788 * 355.15277 * 15 14 12 17 17 C 1.37876 * 120.00116 * 175.15408 * 15 14 12 18 18 N 1.31517 * 119.99899 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00134 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47323 * 89.99438 * 19 17 15 21 21 H 1.48499 * 109.46806 * 210.00011 * 19 17 15 22 22 H 1.48502 * 109.46758 * 329.99310 * 19 17 15 23 23 C 1.50699 * 109.47612 * 278.53501 * 12 11 9 24 24 C 1.38234 * 119.99949 * 319.73495 * 23 12 11 25 25 C 1.38234 * 120.00402 * 179.78499 * 24 23 12 26 26 C 1.38236 * 119.99559 * 0.43811 * 25 24 23 27 27 C 1.38239 * 119.99927 * 359.81379 * 26 25 24 28 28 C 1.38231 * 120.00002 * 359.97438 * 27 26 25 29 29 H 1.08998 * 109.47075 * 60.00076 * 1 2 3 30 30 H 1.09000 * 109.47178 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47370 * 299.99985 * 1 2 3 32 32 H 0.96999 * 120.00358 * 180.02562 * 2 1 3 33 33 H 1.09000 * 109.47394 * 59.99416 * 5 3 2 34 34 H 1.08998 * 109.46999 * 299.99940 * 5 3 2 35 35 H 1.08999 * 109.46959 * 59.99874 * 6 5 3 36 36 H 1.08998 * 109.47279 * 299.99910 * 6 5 3 37 37 H 1.08999 * 109.47447 * 60.00126 * 7 6 5 38 38 H 1.09001 * 109.47526 * 299.99896 * 7 6 5 39 39 H 0.97007 * 119.99402 * 359.72324 * 8 7 6 40 40 H 0.96993 * 120.00246 * 355.08827 * 11 9 8 41 41 H 1.09004 * 109.47223 * 54.54121 * 14 12 11 42 42 H 1.09002 * 109.46747 * 174.53475 * 14 12 11 43 43 H 0.97001 * 119.99609 * 180.02562 * 18 17 15 44 44 H 1.08006 * 120.00052 * 359.97438 * 24 23 12 45 45 H 1.07993 * 120.00222 * 180.27050 * 25 24 23 46 46 H 1.08006 * 120.00163 * 179.83683 * 26 25 24 47 47 H 1.08000 * 119.99923 * 180.02562 * 27 26 25 48 48 H 1.07998 * 119.99648 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2176 -0.0005 5 6 3.6458 1.1673 -0.0006 6 6 4.1558 2.6098 -0.0011 7 6 5.6858 2.6098 -0.0023 8 7 6.1741 3.9910 -0.0022 9 6 7.4992 4.2374 -0.0037 10 8 8.2893 3.3132 0.0000 11 7 7.9484 5.5081 -0.0092 12 6 9.3843 5.7777 0.0978 13 1 9.9376 5.0340 -0.4758 14 6 9.6836 7.1731 -0.4537 15 6 9.3917 7.2024 -1.9319 16 1 9.1043 6.2957 -2.4435 17 6 9.4916 8.3865 -2.6310 18 7 9.2373 8.4118 -3.9211 19 14 9.9894 9.9545 -1.7462 20 1 11.4672 10.0960 -1.7834 21 1 9.3632 11.1217 -2.4175 22 1 9.5335 9.8922 -0.3343 23 6 9.8020 5.7091 1.5442 24 6 8.9856 6.2400 2.5253 25 6 9.3665 6.1732 3.8524 26 6 10.5681 5.5834 4.1976 27 6 11.3870 5.0571 3.2161 28 6 11.0039 5.1201 1.8894 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.9500 -0.8400 -0.0004 33 1 4.0089 0.6536 -0.8908 34 1 4.0095 0.6533 0.8891 35 1 3.7928 3.1238 0.8889 36 1 3.7921 3.1235 -0.8910 37 1 6.0484 2.0960 -0.8926 38 1 6.0499 2.0961 0.8874 39 1 5.5437 4.7283 -0.0055 40 1 7.3209 6.2439 -0.0841 41 1 9.0580 7.9068 0.0548 42 1 10.7337 7.4126 -0.2859 43 1 9.3079 9.2449 -4.4131 44 1 8.0486 6.7044 2.2552 45 1 8.7266 6.5841 4.6192 46 1 10.8670 5.5335 5.2343 47 1 12.3256 4.5960 3.4858 48 1 11.6435 4.7086 1.1226 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269629508.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:44 Heat of formation + Delta-G solvation = -83.008748 kcal Electronic energy + Delta-G solvation = -27766.823053 eV Core-core repulsion = 23819.914362 eV Total energy + Delta-G solvation = -3946.908690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.23987 -40.68478 -39.87923 -37.20594 -36.33287 -35.57551 -34.68712 -33.81600 -32.25044 -31.66109 -30.95547 -28.97917 -26.96664 -26.07805 -23.57599 -23.28429 -22.92047 -22.16474 -21.37550 -21.16998 -19.22047 -19.02293 -18.34010 -17.71955 -17.21534 -17.07175 -16.79150 -16.44796 -16.29519 -15.96076 -15.83666 -15.33473 -15.22103 -15.00267 -14.58887 -14.49595 -14.31643 -14.15300 -13.99008 -13.77112 -13.52783 -13.23707 -13.17356 -13.00336 -12.92579 -12.54719 -12.45550 -12.40391 -11.90565 -11.86438 -11.72142 -11.68301 -11.40038 -11.25700 -10.96257 -10.77077 -10.26070 -10.11887 -9.75524 -9.68757 -9.49754 -8.26956 -6.31678 0.51723 0.57953 1.38571 1.39279 1.50351 1.64692 1.82688 2.27156 2.36158 2.36620 2.96355 3.07863 3.45621 3.72898 3.96538 4.03154 4.04213 4.05884 4.22726 4.31193 4.34429 4.39830 4.51768 4.56550 4.61530 4.64198 4.68282 4.74956 4.76631 4.78701 4.95313 5.05884 5.15069 5.17243 5.19877 5.21981 5.29466 5.46816 5.56478 5.58804 5.63543 5.66351 5.67915 5.88618 6.13078 6.20107 6.28371 6.56712 6.75287 7.18900 7.28535 7.32435 7.69691 8.89512 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009637 B = 0.002670 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.679619 B =10484.419782 C =12564.914361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.726 5.726 3 C 0.506 3.494 4 O -0.590 6.590 5 C -0.130 4.130 6 C -0.105 4.105 7 C 0.143 3.857 8 N -0.740 5.740 9 C 0.701 3.299 10 O -0.637 6.637 11 N -0.716 5.716 12 C 0.224 3.776 13 H 0.052 0.948 14 C -0.005 4.005 15 C -0.517 4.517 16 H 0.029 0.971 17 C 0.010 3.990 18 N -0.949 5.949 19 Si 0.946 3.054 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.240 1.240 23 C -0.100 4.100 24 C -0.119 4.119 25 C -0.125 4.125 26 C -0.128 4.128 27 C -0.123 4.123 28 C -0.130 4.130 29 H 0.045 0.955 30 H 0.110 0.890 31 H 0.047 0.953 32 H 0.420 0.580 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.407 0.593 40 H 0.404 0.596 41 H 0.039 0.961 42 H 0.030 0.970 43 H 0.265 0.735 44 H 0.122 0.878 45 H 0.145 0.855 46 H 0.150 0.850 47 H 0.143 0.857 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.552 -15.172 16.477 25.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.379 5.379 3 C 0.294 3.706 4 O -0.470 6.470 5 C -0.171 4.171 6 C -0.143 4.143 7 C 0.019 3.981 8 N -0.396 5.396 9 C 0.401 3.599 10 O -0.519 6.519 11 N -0.369 5.369 12 C 0.118 3.882 13 H 0.071 0.929 14 C -0.043 4.043 15 C -0.555 4.555 16 H 0.047 0.953 17 C -0.187 4.187 18 N -0.590 5.590 19 Si 0.770 3.230 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.163 1.163 23 C -0.101 4.101 24 C -0.137 4.137 25 C -0.143 4.143 26 C -0.146 4.146 27 C -0.141 4.141 28 C -0.148 4.148 29 H 0.064 0.936 30 H 0.128 0.872 31 H 0.066 0.934 32 H 0.257 0.743 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.243 0.757 40 H 0.240 0.760 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.074 0.926 44 H 0.140 0.860 45 H 0.163 0.837 46 H 0.168 0.832 47 H 0.161 0.839 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.312 -15.186 16.336 25.009 hybrid contribution -0.153 1.040 -0.818 1.332 sum -11.465 -14.146 15.518 23.924 Atomic orbital electron populations 1.21640 0.79310 1.04092 1.01173 1.45793 1.08250 1.08931 1.74900 1.21177 0.91305 0.83474 0.74644 1.90709 1.71678 1.33208 1.51449 1.21554 0.89912 0.98335 1.07253 1.21380 0.92209 0.97170 1.03563 1.21187 0.93675 0.81352 1.01872 1.45017 1.04403 1.10025 1.80144 1.16108 0.83092 0.83328 0.77372 1.90828 1.56229 1.44573 1.60264 1.44932 1.08323 1.05920 1.77721 1.19385 0.80177 0.97701 0.90961 0.92932 1.19750 0.97549 0.92485 0.94527 1.21184 1.46023 0.94988 0.93261 0.95260 1.25920 0.94739 1.02745 0.95320 1.70073 1.51234 1.28334 1.09320 0.85728 0.78866 0.78270 0.80178 1.19746 1.21202 1.16346 1.20435 0.95748 0.98346 0.95585 1.21072 0.99706 0.99743 0.93194 1.21428 0.97491 0.99625 0.95734 1.21473 0.94438 0.98277 1.00371 1.21383 1.00765 0.99929 0.92040 1.21178 0.96398 0.99690 0.97574 0.93603 0.87177 0.93381 0.74278 0.86320 0.85810 0.90916 0.91699 0.92536 0.91555 0.75749 0.76034 0.94283 0.95141 0.92570 0.86015 0.83693 0.83211 0.83878 0.86849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 10.70 127.77 1.37 2.18 16 2 N -0.73 -7.63 5.71 -484.53 -2.77 -10.40 16 3 C 0.51 8.84 7.83 87.66 0.69 9.52 16 4 O -0.59 -16.30 15.98 -3.02 -0.05 -16.34 16 5 C -0.13 -1.61 5.70 29.85 0.17 -1.44 16 6 C -0.10 -1.93 4.62 30.59 0.14 -1.79 16 7 C 0.14 3.32 5.67 86.38 0.49 3.81 16 8 N -0.74 -21.12 5.56 -478.54 -2.66 -23.78 16 9 C 0.70 26.72 8.47 179.05 1.52 28.24 16 10 O -0.64 -29.11 16.04 -3.98 -0.06 -29.18 16 11 N -0.72 -27.21 4.10 -461.41 -1.89 -29.10 16 12 C 0.22 9.37 2.11 44.25 0.09 9.47 16 13 H 0.05 2.55 7.49 -2.39 -0.02 2.54 16 14 C -0.01 -0.25 3.56 29.85 0.11 -0.14 16 15 C -0.52 -29.01 9.40 25.60 0.24 -28.77 16 16 H 0.03 1.87 7.99 -2.91 -0.02 1.85 16 17 C 0.01 0.56 5.47 84.65 0.46 1.02 16 18 N -0.95 -58.98 13.96 21.45 0.30 -58.68 16 19 Si 0.95 43.20 27.57 68.60 1.89 45.09 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.24 -9.95 6.40 99.48 0.64 -9.31 16 23 C -0.10 -3.61 4.86 -19.87 -0.10 -3.71 16 24 C -0.12 -3.69 9.32 22.27 0.21 -3.48 16 25 C -0.13 -3.15 10.05 22.27 0.22 -2.93 16 26 C -0.13 -3.01 10.05 22.27 0.22 -2.78 16 27 C -0.12 -3.29 10.05 22.27 0.22 -3.06 16 28 C -0.13 -4.37 9.67 22.27 0.22 -4.15 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.11 0.29 8.14 -2.39 -0.02 0.28 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.42 1.36 8.83 -92.71 -0.82 0.54 16 33 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 1.42 8.10 -2.39 -0.02 1.40 16 36 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 37 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.41 9.73 8.49 -92.70 -0.79 8.94 16 40 H 0.40 13.93 8.59 -92.71 -0.80 13.13 16 41 H 0.04 1.68 6.86 -2.38 -0.02 1.67 16 42 H 0.03 1.39 7.81 -2.39 -0.02 1.37 16 43 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 44 H 0.12 3.52 7.73 -2.91 -0.02 3.50 16 45 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 46 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 47 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 48 H 0.11 3.84 8.04 -2.91 -0.02 3.81 16 Total: -1.00 -83.84 404.55 -0.46 -84.30 By element: Atomic # 1 Polarization: 37.59 SS G_CDS: -1.49 Total: 36.10 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 6.27 Total: 1.99 kcal Atomic # 7 Polarization: -114.93 SS G_CDS: -7.02 Total: -121.95 kcal Atomic # 8 Polarization: -45.41 SS G_CDS: -0.11 Total: -45.52 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.89 Total: 45.09 kcal Total: -83.84 -0.46 -84.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269629508.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.289 kcal (2) G-P(sol) polarization free energy of solvation -83.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds