Wall clock time and date at job start Tue Mar 31 2020 17:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35901 * 117.00231 * 2 1 4 4 C 1.38812 * 120.01594 * 0.02562 * 3 2 1 5 5 C 1.38175 * 120.09479 * 180.02562 * 4 3 2 6 6 C 1.38161 * 120.12718 * 359.95423 * 5 4 3 7 7 C 1.38938 * 120.03433 * 0.04454 * 6 5 4 8 8 N 1.39661 * 120.04498 * 179.97438 * 7 6 5 9 9 C 1.48560 * 111.00065 * 120.12656 * 8 7 6 10 10 C 1.54382 * 104.59498 * 200.95808 * 9 8 7 11 11 C 1.54266 * 105.05996 * 23.85152 * 10 9 8 12 12 H 1.08993 * 110.32254 * 241.00387 * 11 10 9 13 13 N 1.46499 * 110.32246 * 118.89519 * 11 10 9 14 14 C 1.34777 * 120.00065 * 86.45231 * 13 11 10 15 15 O 1.21593 * 119.99923 * 0.02562 * 14 13 11 16 16 N 1.34777 * 120.00128 * 180.02562 * 14 13 11 17 17 C 1.46498 * 119.99828 * 180.27942 * 16 14 13 18 18 C 1.52996 * 109.47059 * 179.72339 * 17 16 14 19 19 C 1.50697 * 109.47491 * 179.97438 * 18 17 16 20 20 H 1.08002 * 119.99965 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00490 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99545 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00173 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47330 * 89.99925 * 23 21 19 25 25 H 1.48495 * 109.47202 * 209.99886 * 23 21 19 26 26 H 1.48496 * 109.47402 * 329.99928 * 23 21 19 27 27 C 1.48562 * 111.00382 * 4.70632 * 8 7 6 28 28 C 1.38572 * 120.01936 * 180.27418 * 3 2 1 29 29 H 1.09001 * 109.46746 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47223 * 300.00364 * 1 2 3 31 31 H 1.09004 * 109.46839 * 59.99875 * 1 2 3 32 32 H 1.07998 * 119.95385 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.93872 * 179.97438 * 5 4 3 34 34 H 1.07999 * 119.98536 * 180.02562 * 6 5 4 35 35 H 1.09002 * 110.40811 * 82.18184 * 9 8 7 36 36 H 1.08995 * 110.41336 * 319.73719 * 9 8 7 37 37 H 1.08997 * 110.32482 * 264.95413 * 10 9 8 38 38 H 1.08992 * 110.41005 * 142.79189 * 10 9 8 39 39 H 0.97000 * 120.00386 * 266.45600 * 13 11 10 40 40 H 0.97001 * 119.99727 * 359.97438 * 16 14 13 41 41 H 1.09004 * 109.46963 * 299.72135 * 17 16 14 42 42 H 1.08994 * 109.47567 * 59.72287 * 17 16 14 43 43 H 1.09004 * 109.47066 * 299.99732 * 18 17 16 44 44 H 1.09000 * 109.47665 * 59.99541 * 18 17 16 45 45 H 0.97004 * 119.99855 * 180.02562 * 22 21 19 46 46 H 1.09004 * 110.40665 * 40.25676 * 27 8 7 47 47 H 1.09006 * 110.41085 * 277.82359 * 27 8 7 48 48 H 1.07999 * 120.07032 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2904 2.3753 0.0005 5 6 1.9160 3.6073 0.0000 6 6 3.2955 3.6845 -0.0001 7 6 4.0570 2.5224 -0.0006 8 7 5.4515 2.6002 -0.0013 9 6 6.0224 1.9347 1.1979 10 6 7.4326 2.5450 1.3472 11 6 7.3561 3.9103 0.6331 12 1 8.0612 3.9431 -0.1974 13 7 7.6331 4.9950 1.5780 14 6 8.9043 5.3765 1.8121 15 8 9.8213 4.8208 1.2386 16 7 9.1592 6.3741 2.6818 17 6 10.5407 6.7929 2.9316 18 6 10.5508 7.9381 3.9462 19 6 11.9719 8.3686 4.2037 20 1 12.7864 7.8745 3.6949 21 6 12.2323 9.3932 5.0888 22 7 11.2404 9.9951 5.7079 23 14 13.9938 9.9262 5.4084 24 1 14.3701 10.9940 4.4473 25 1 14.1101 10.4449 6.7949 26 1 14.9017 8.7637 5.2371 27 6 5.9062 4.0099 0.1125 28 6 3.4298 1.2838 -0.0057 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 0.2119 2.3182 0.0005 33 1 1.3256 4.5116 0.0000 34 1 3.7821 4.6486 -0.0001 35 1 6.0889 0.8582 1.0398 36 1 5.4182 2.1539 2.0782 37 1 8.1740 1.9071 0.8662 38 1 7.6780 2.6818 2.4003 39 1 6.9016 5.4385 2.0353 40 1 8.4277 6.8176 3.1390 41 1 11.1095 5.9516 3.3276 42 1 10.9925 7.1300 1.9988 43 1 9.9821 8.7794 3.5502 44 1 10.0990 7.6011 4.8791 45 1 11.4235 10.7162 6.3304 46 1 5.2836 4.5540 0.8229 47 1 5.8851 4.4961 -0.8629 48 1 4.0194 0.3789 -0.0106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273098209.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:12 Heat of formation + Delta-G solvation = -30.029992 kcal Electronic energy + Delta-G solvation = -27363.979113 eV Core-core repulsion = 23419.367754 eV Total energy + Delta-G solvation = -3944.611359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.02147 -39.98263 -39.11950 -37.16974 -34.98336 -34.25448 -32.85822 -31.72611 -31.22464 -29.67143 -28.72037 -28.21648 -27.37234 -24.68837 -23.26110 -23.08836 -21.52195 -21.00944 -20.67426 -20.23381 -18.60041 -18.10799 -16.84645 -16.69449 -16.32156 -16.24711 -16.13182 -16.00175 -15.15652 -14.99515 -14.71803 -14.49924 -14.18668 -13.90710 -13.81160 -13.63948 -13.29484 -13.16270 -12.87755 -12.54278 -12.39758 -12.28065 -12.15324 -11.96364 -11.60074 -11.51915 -11.28441 -11.18887 -11.03191 -10.95236 -10.62941 -10.32085 -10.06796 -9.92824 -9.56001 -9.26299 -9.07570 -8.71924 -8.49110 -8.30351 -8.26841 -6.09238 -4.11778 0.94935 1.08482 2.71842 2.96367 3.29919 3.30128 3.36148 3.40768 3.54474 3.72105 4.15861 4.36408 4.39980 4.47783 4.66043 4.67709 4.68606 4.70485 4.74866 4.84210 4.92024 4.96684 5.03243 5.07430 5.19052 5.25005 5.28044 5.48550 5.52744 5.60072 5.69662 5.90057 5.91662 5.95425 6.02692 6.12744 6.29127 6.39038 6.39658 6.64955 6.77627 6.80434 6.98726 7.02600 7.20155 7.56444 7.63049 7.89939 8.25525 8.41341 8.92547 8.98382 9.53034 11.02399 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.030462 B = 0.001641 C = 0.001597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.943731 B =17060.734566 C =17523.632045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.148 3.852 4 C -0.233 4.233 5 C -0.055 4.055 6 C -0.204 4.204 7 C 0.142 3.858 8 N -0.463 5.463 9 C 0.040 3.960 10 C -0.137 4.137 11 C 0.163 3.837 12 H 0.102 0.898 13 N -0.748 5.748 14 C 0.700 3.300 15 O -0.595 6.595 16 N -0.738 5.738 17 C 0.140 3.860 18 C 0.013 3.987 19 C -0.521 4.521 20 H 0.060 0.940 21 C 0.059 3.941 22 N -0.895 5.895 23 Si 0.897 3.103 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.272 1.272 27 C 0.024 3.976 28 C -0.169 4.169 29 H 0.100 0.900 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.393 0.607 40 H 0.393 0.607 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.022 0.978 44 H 0.022 0.978 45 H 0.262 0.738 46 H 0.067 0.933 47 H 0.097 0.903 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.944 -17.223 -11.038 32.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.102 3.898 4 C -0.253 4.253 5 C -0.074 4.074 6 C -0.225 4.225 7 C 0.043 3.957 8 N -0.178 5.178 9 C -0.085 4.085 10 C -0.177 4.177 11 C 0.056 3.944 12 H 0.120 0.880 13 N -0.405 5.405 14 C 0.399 3.601 15 O -0.473 6.473 16 N -0.392 5.392 17 C 0.017 3.983 18 C -0.025 4.025 19 C -0.560 4.560 20 H 0.078 0.922 21 C -0.143 4.143 22 N -0.534 5.534 23 Si 0.725 3.275 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.197 1.197 27 C -0.103 4.103 28 C -0.190 4.190 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.227 0.773 40 H 0.226 0.774 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.040 0.960 45 H 0.071 0.929 46 H 0.085 0.915 47 H 0.116 0.884 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -23.736 -18.039 -11.916 32.106 hybrid contribution -0.442 1.299 1.271 1.870 sum -24.178 -16.740 -10.646 31.275 Atomic orbital electron populations 1.23063 0.78239 1.03968 1.01432 1.86068 1.21484 1.26960 1.88580 1.18778 0.91863 0.84139 0.95060 1.21169 0.99957 0.92356 1.11781 1.20795 0.94138 0.97009 0.95440 1.21289 0.94246 0.97981 1.08986 1.18756 0.88584 0.92846 0.95491 1.62388 1.05498 1.12266 1.37637 1.23246 0.95276 1.00036 0.89955 1.22846 0.95930 0.96686 1.02195 1.21363 0.95417 0.85611 0.91978 0.87960 1.45242 1.06964 1.39828 1.48477 1.16048 0.82734 0.80745 0.80546 1.90899 1.43645 1.58610 1.54172 1.45548 1.11114 1.36941 1.45554 1.21594 0.78489 0.98319 0.99865 1.19328 0.98118 0.91843 0.93210 1.21055 0.92103 1.17745 1.25049 0.92206 1.24992 0.97411 0.96216 0.95665 1.69957 1.31044 1.24016 1.28333 0.86508 0.84643 0.78951 0.77430 1.20565 1.21197 1.19710 1.23574 0.95057 0.89109 1.02585 1.19894 0.91362 0.97389 1.10307 0.88211 0.92579 0.92582 0.85616 0.85629 0.85081 0.89238 0.92618 0.89852 0.90023 0.77333 0.77417 0.92762 0.92757 0.95979 0.95981 0.92884 0.91454 0.88437 0.84915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.76 10.49 -19.43 -0.20 -2.97 16 3 C 0.15 1.36 6.68 -39.25 -0.26 1.10 16 4 C -0.23 -1.82 9.04 -39.39 -0.36 -2.18 16 5 C -0.06 -0.42 10.03 -39.63 -0.40 -0.82 16 6 C -0.20 -1.73 8.82 -39.35 -0.35 -2.08 16 7 C 0.14 1.34 5.47 -83.81 -0.46 0.88 16 8 N -0.46 -4.34 5.43 -166.72 -0.91 -5.24 16 9 C 0.04 0.35 5.92 -2.18 -0.01 0.34 16 10 C -0.14 -1.40 6.78 -25.34 -0.17 -1.57 16 11 C 0.16 1.77 3.36 -66.55 -0.22 1.54 16 12 H 0.10 1.32 7.64 -51.93 -0.40 0.92 16 13 N -0.75 -8.89 5.05 -57.32 -0.29 -9.18 16 14 C 0.70 11.81 8.56 -86.92 -0.74 11.07 16 15 O -0.59 -12.49 16.04 5.28 0.08 -12.40 16 16 N -0.74 -12.75 5.56 -65.23 -0.36 -13.12 16 17 C 0.14 2.99 5.61 -4.04 -0.02 2.97 16 18 C 0.01 0.31 5.09 -27.89 -0.14 0.17 16 19 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 20 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 23 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 27 C 0.02 0.21 4.95 -2.18 -0.01 0.20 16 28 C -0.17 -1.64 9.31 -39.24 -0.37 -2.00 16 29 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.21 7.66 -51.93 -0.40 -0.18 16 31 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 32 H 0.13 0.71 6.29 -52.49 -0.33 0.38 16 33 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.13 0.94 5.79 -52.49 -0.30 0.64 16 35 H 0.09 0.71 8.04 -51.93 -0.42 0.30 16 36 H 0.06 0.48 7.97 -51.93 -0.41 0.06 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.90 7.95 -51.93 -0.41 0.49 16 39 H 0.39 3.59 8.36 -40.82 -0.34 3.25 16 40 H 0.39 5.79 8.49 -40.82 -0.35 5.44 16 41 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 46 H 0.07 0.50 5.91 -51.93 -0.31 0.19 16 47 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.13 1.24 7.91 -52.49 -0.41 0.82 16 LS Contribution 391.49 15.07 5.90 5.90 Total: -1.00 -33.49 391.49 -10.40 -43.89 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -7.40 Total: 4.53 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -2.93 Total: -2.46 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.82 Total: -52.82 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: -0.12 Total: -15.37 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.49 -10.40 -43.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273098209.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.857 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds