Wall clock time and date at job start Tue Mar 31 2020 17:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36014 * 116.99644 * 2 1 4 4 C 1.38499 * 120.08365 * 359.97438 * 3 2 1 5 5 C 1.38282 * 120.02144 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.17434 * 359.97438 * 5 4 3 7 7 C 1.38218 * 120.16607 * 0.02562 * 6 5 4 8 8 C 1.38724 * 119.97542 * 359.97438 * 7 6 5 9 9 N 1.39971 * 120.08844 * 179.97438 * 8 7 6 10 10 C 1.46903 * 110.99688 * 64.32288 * 9 8 7 11 11 C 1.53238 * 109.33955 * 172.74723 * 10 9 8 12 12 N 1.47083 * 108.52246 * 53.82814 * 11 10 9 13 13 C 1.34776 * 120.88069 * 128.83328 * 12 11 10 14 14 O 1.21590 * 119.99515 * 174.98458 * 13 12 11 15 15 N 1.34777 * 120.00141 * 354.98755 * 13 12 11 16 16 C 1.46498 * 119.99879 * 185.07811 * 15 13 12 17 17 C 1.53002 * 109.46967 * 180.02562 * 16 15 13 18 18 C 1.50698 * 109.47039 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00254 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99961 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99626 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99936 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46883 * 89.99752 * 22 20 18 24 24 H 1.48500 * 109.46647 * 209.99837 * 22 20 18 25 25 H 1.48497 * 109.46999 * 330.00003 * 22 20 18 26 26 C 1.47082 * 118.23611 * 308.82193 * 12 11 10 27 27 C 1.46894 * 111.00190 * 300.02507 * 9 8 7 28 28 H 1.09003 * 109.46983 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47250 * 300.00040 * 1 2 3 30 30 H 1.08999 * 109.47400 * 60.00050 * 1 2 3 31 31 H 1.08008 * 119.99097 * 0.02562 * 4 3 2 32 32 H 1.07998 * 119.91148 * 179.71797 * 5 4 3 33 33 H 1.08007 * 119.91218 * 179.97438 * 6 5 4 34 34 H 1.07998 * 120.00946 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.49488 * 292.70449 * 10 9 8 36 36 H 1.08993 * 109.49551 * 52.78810 * 10 9 8 37 37 H 1.09003 * 109.62959 * 294.12202 * 11 10 9 38 38 H 1.09000 * 109.63336 * 173.53892 * 11 10 9 39 39 H 0.97000 * 119.99993 * 5.07941 * 15 13 12 40 40 H 1.08999 * 109.46886 * 299.99740 * 16 15 13 41 41 H 1.08995 * 109.47299 * 59.99922 * 16 15 13 42 42 H 1.09005 * 109.46504 * 299.99767 * 17 16 15 43 43 H 1.08995 * 109.47503 * 59.99645 * 17 16 15 44 44 H 0.97002 * 119.99870 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.62721 * 291.46799 * 26 12 11 46 46 H 1.09002 * 109.62482 * 170.89197 * 26 12 11 47 47 H 1.09002 * 109.49171 * 307.21433 * 27 9 8 48 48 H 1.09002 * 109.49405 * 67.25935 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2937 2.3745 -0.0005 5 6 1.9228 3.6060 0.0000 6 6 3.3033 3.6811 0.0016 7 6 4.0618 2.5257 0.0021 8 6 3.4376 1.2868 0.0016 9 7 4.2033 0.1152 0.0016 10 6 4.9883 -0.0006 1.2379 11 6 5.6681 -1.3733 1.2808 12 7 6.4343 -1.5542 0.0383 13 6 7.7297 -1.9247 0.0722 14 8 8.3224 -2.1582 -0.9634 15 7 8.3680 -2.0364 1.2540 16 6 9.8029 -2.3300 1.2866 17 6 10.2754 -2.4040 2.7399 18 6 11.7515 -2.7054 2.7735 19 1 12.2980 -2.8320 1.8505 20 6 12.4046 -2.8196 3.9825 21 7 11.7392 -2.6650 5.1063 22 14 14.2342 -3.1939 4.0240 23 1 15.0001 -1.9218 4.0127 24 1 14.5558 -3.9544 5.2583 25 1 14.6010 -4.0031 2.8342 26 6 5.7492 -1.3203 -1.2420 27 6 5.0662 0.0502 -1.1854 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2151 2.3193 -0.0005 32 1 1.3341 4.5114 -0.0050 33 1 3.7902 4.6452 0.0016 34 1 5.1400 2.5873 0.0038 35 1 5.7468 0.7818 1.2618 36 1 4.3285 0.1055 2.0990 37 1 4.9118 -2.1541 1.3615 38 1 6.3415 -1.4220 2.1365 39 1 7.8773 -1.9224 2.0829 40 1 9.9896 -3.2849 0.7952 41 1 10.3470 -1.5414 0.7669 42 1 10.0886 -1.4493 3.2317 43 1 9.7312 -3.1928 3.2593 44 1 12.1986 -2.7456 5.9568 45 1 5.0007 -2.0960 -1.4038 46 1 6.4762 -1.3340 -2.0540 47 1 4.4629 0.1932 -2.0819 48 1 5.8233 0.8323 -1.1280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273657590.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:42 Heat of formation + Delta-G solvation = -18.537556 kcal Electronic energy + Delta-G solvation = -28435.028400 eV Core-core repulsion = 24490.915390 eV Total energy + Delta-G solvation = -3944.113010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.90885 -39.92295 -38.39829 -37.18290 -34.90602 -34.54260 -32.84163 -31.28278 -30.55991 -30.36990 -29.30444 -27.60283 -26.53158 -24.68100 -23.72425 -22.88874 -22.18993 -21.31055 -20.77080 -19.22972 -18.56351 -17.96214 -16.67331 -16.43894 -16.31719 -16.07517 -15.72459 -15.43689 -15.16970 -14.99658 -14.63746 -14.56923 -14.43729 -14.02666 -14.00385 -13.54042 -13.32035 -12.94176 -12.58315 -12.52385 -12.40404 -12.25580 -12.05697 -11.75384 -11.51713 -11.46927 -11.35344 -11.11981 -11.05961 -11.01480 -10.60942 -10.29825 -9.85641 -9.51577 -9.24050 -9.21053 -8.90371 -8.59013 -8.43094 -8.41625 -8.12756 -6.07403 -4.09773 0.88883 1.11358 2.88848 3.00089 3.31044 3.36721 3.37072 3.41775 3.48779 3.63037 4.24775 4.45629 4.47483 4.59633 4.69288 4.76468 4.81487 4.85570 4.92887 4.98426 5.03724 5.11823 5.15742 5.19167 5.27597 5.29735 5.34643 5.42040 5.56214 5.70387 5.76270 5.88073 5.93589 6.05298 6.16059 6.28325 6.39129 6.43076 6.58401 6.71540 6.79031 6.80284 7.03741 7.21977 7.33033 7.58246 7.65581 7.91911 8.27399 8.40764 8.94756 9.01806 9.54792 11.04310 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020486 B = 0.002110 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.427661 B =13264.880947 C =13615.928435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.294 6.294 3 C 0.152 3.848 4 C -0.209 4.209 5 C -0.082 4.082 6 C -0.149 4.149 7 C -0.108 4.108 8 C 0.056 3.944 9 N -0.488 5.488 10 C 0.048 3.952 11 C 0.118 3.882 12 N -0.637 5.637 13 C 0.703 3.297 14 O -0.596 6.596 15 N -0.739 5.739 16 C 0.139 3.861 17 C 0.013 3.987 18 C -0.520 4.520 19 H 0.060 0.940 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.272 1.272 26 C 0.138 3.862 27 C 0.047 3.953 28 H 0.100 0.900 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.044 0.956 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.392 0.608 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.021 0.979 43 H 0.022 0.978 44 H 0.262 0.738 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.086 0.914 48 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.624 11.490 -9.316 30.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.206 6.206 3 C 0.105 3.895 4 C -0.228 4.228 5 C -0.100 4.100 6 C -0.168 4.168 7 C -0.128 4.128 8 C -0.038 4.038 9 N -0.210 5.210 10 C -0.079 4.079 11 C -0.006 4.006 12 N -0.376 5.376 13 C 0.405 3.595 14 O -0.475 6.475 15 N -0.395 5.395 16 C 0.017 3.983 17 C -0.024 4.024 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 C 0.014 3.986 27 C -0.080 4.080 28 H 0.118 0.882 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.104 0.896 39 H 0.227 0.773 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.039 0.961 43 H 0.040 0.960 44 H 0.071 0.929 45 H 0.089 0.911 46 H 0.115 0.885 47 H 0.104 0.896 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -26.323 10.673 -9.895 30.079 hybrid contribution 0.930 0.819 0.701 1.424 sum -25.393 11.493 -9.194 29.350 Atomic orbital electron populations 1.23087 0.79076 1.04011 1.00979 1.86279 1.20399 1.25968 1.87913 1.18898 0.90775 0.84473 0.95325 1.21202 1.00065 0.92178 1.09340 1.20966 0.94606 0.96989 0.97487 1.20961 0.93849 0.98231 1.03772 1.21548 1.00338 0.92169 0.98714 1.18055 0.89904 0.89228 1.06656 1.59466 1.25001 1.33803 1.02720 1.22551 0.95989 0.97333 0.92073 1.21688 0.95303 0.96613 0.87012 1.47321 1.09673 1.73676 1.06978 1.15958 0.80548 0.78218 0.84791 1.90872 1.66238 1.57859 1.32560 1.45696 1.11845 1.75800 1.06131 1.21593 0.75990 0.99672 1.01084 1.19320 0.96647 0.97714 0.88744 1.21054 0.93378 1.48749 0.92653 0.92216 1.24999 0.98572 0.95183 0.95589 1.69957 1.36134 1.49903 0.97374 0.86508 0.85033 0.78431 0.77563 1.20593 1.21192 1.19712 1.21461 0.95836 0.95178 0.86092 1.22602 0.94823 0.97777 0.92810 0.88190 0.92872 0.92898 0.85241 0.85766 0.85853 0.85566 0.93789 0.89482 0.90480 0.89592 0.77262 0.92691 0.92920 0.96065 0.95965 0.92883 0.91126 0.88483 0.89615 0.93966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.13 16 2 O -0.29 -2.90 10.24 -19.78 -0.20 -3.11 16 3 C 0.15 1.50 6.70 -39.09 -0.26 1.24 16 4 C -0.21 -1.64 9.04 -39.47 -0.36 -1.99 16 5 C -0.08 -0.60 10.04 -39.56 -0.40 -1.00 16 6 C -0.15 -1.20 10.04 -39.58 -0.40 -1.60 16 7 C -0.11 -1.01 8.73 -39.41 -0.34 -1.36 16 8 C 0.06 0.59 4.68 -83.56 -0.39 0.19 16 9 N -0.49 -5.34 4.35 -170.66 -0.74 -6.08 16 10 C 0.05 0.51 5.31 -3.70 -0.02 0.49 16 11 C 0.12 1.36 6.59 -3.60 -0.02 1.34 16 12 N -0.64 -9.17 3.01 -178.19 -0.54 -9.70 16 13 C 0.70 13.05 8.31 -86.92 -0.72 12.33 16 14 O -0.60 -13.25 15.83 5.29 0.08 -13.17 16 15 N -0.74 -13.73 5.47 -65.23 -0.36 -14.09 16 16 C 0.14 3.08 5.62 -4.04 -0.02 3.05 16 17 C 0.01 0.33 5.09 -27.88 -0.14 0.19 16 18 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 19 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 22 Si 0.90 21.56 29.54 -169.99 -5.02 16.53 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.14 1.74 6.58 -3.61 -0.02 1.71 16 27 C 0.05 0.51 5.25 -3.71 -0.02 0.49 16 28 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.24 7.66 -51.92 -0.40 -0.15 16 30 H 0.05 0.24 7.66 -51.93 -0.40 -0.16 16 31 H 0.13 0.73 6.30 -52.48 -0.33 0.40 16 32 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 33 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 34 H 0.13 1.16 7.18 -52.49 -0.38 0.79 16 35 H 0.04 0.49 7.62 -51.93 -0.40 0.10 16 36 H 0.09 0.85 8.09 -51.93 -0.42 0.43 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.09 0.95 5.63 -51.93 -0.29 0.66 16 39 H 0.39 6.37 5.97 -40.82 -0.24 6.13 16 40 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.10 1.34 7.10 -51.93 -0.37 0.97 16 47 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 48 H 0.04 0.48 7.40 -51.93 -0.38 0.10 16 LS Contribution 387.27 15.07 5.84 5.84 Total: -1.00 -33.85 387.27 -10.12 -43.97 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -7.37 Total: 2.45 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -2.54 Total: 2.90 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.90 Total: -55.41 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.12 Total: -16.28 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.85 -10.12 -43.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273657590.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.435 kcal (2) G-P(sol) polarization free energy of solvation -33.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds