Wall clock time and date at job start Tue Mar 31 2020 17:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36014 * 116.99644 * 2 1 4 4 C 1.38499 * 120.08365 * 359.97438 * 3 2 1 5 5 C 1.38282 * 120.02144 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.17434 * 359.97438 * 5 4 3 7 7 C 1.38218 * 120.16607 * 0.02562 * 6 5 4 8 8 C 1.38724 * 119.97542 * 359.97438 * 7 6 5 9 9 N 1.39971 * 120.08844 * 179.97438 * 8 7 6 10 10 C 1.46903 * 110.99688 * 64.32288 * 9 8 7 11 11 C 1.53238 * 109.33955 * 172.74723 * 10 9 8 12 12 N 1.47083 * 108.52246 * 53.82814 * 11 10 9 13 13 C 1.34776 * 120.88069 * 128.83328 * 12 11 10 14 14 O 1.21590 * 119.99515 * 174.98458 * 13 12 11 15 15 N 1.34777 * 120.00141 * 354.98755 * 13 12 11 16 16 C 1.46498 * 119.99879 * 185.07811 * 15 13 12 17 17 C 1.53002 * 109.46967 * 180.02562 * 16 15 13 18 18 C 1.50698 * 109.47039 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00254 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99961 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99626 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99936 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46883 * 89.99752 * 22 20 18 24 24 H 1.48500 * 109.46647 * 209.99837 * 22 20 18 25 25 H 1.48497 * 109.46999 * 330.00003 * 22 20 18 26 26 C 1.47082 * 118.23611 * 308.82193 * 12 11 10 27 27 C 1.46894 * 111.00190 * 300.02507 * 9 8 7 28 28 H 1.09003 * 109.46983 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47250 * 300.00040 * 1 2 3 30 30 H 1.08999 * 109.47400 * 60.00050 * 1 2 3 31 31 H 1.08008 * 119.99097 * 0.02562 * 4 3 2 32 32 H 1.07998 * 119.91148 * 179.71797 * 5 4 3 33 33 H 1.08007 * 119.91218 * 179.97438 * 6 5 4 34 34 H 1.07998 * 120.00946 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.49488 * 292.70449 * 10 9 8 36 36 H 1.08993 * 109.49551 * 52.78810 * 10 9 8 37 37 H 1.09003 * 109.62959 * 294.12202 * 11 10 9 38 38 H 1.09000 * 109.63336 * 173.53892 * 11 10 9 39 39 H 0.97000 * 119.99993 * 5.07941 * 15 13 12 40 40 H 1.08999 * 109.46886 * 299.99740 * 16 15 13 41 41 H 1.08995 * 109.47299 * 59.99922 * 16 15 13 42 42 H 1.09005 * 109.46504 * 299.99767 * 17 16 15 43 43 H 1.08995 * 109.47503 * 59.99645 * 17 16 15 44 44 H 0.97002 * 119.99870 * 179.97438 * 21 20 18 45 45 H 1.09001 * 109.62721 * 291.46799 * 26 12 11 46 46 H 1.09002 * 109.62482 * 170.89197 * 26 12 11 47 47 H 1.09002 * 109.49171 * 307.21433 * 27 9 8 48 48 H 1.09002 * 109.49405 * 67.25935 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2937 2.3745 -0.0005 5 6 1.9228 3.6060 0.0000 6 6 3.3033 3.6811 0.0016 7 6 4.0618 2.5257 0.0021 8 6 3.4376 1.2868 0.0016 9 7 4.2033 0.1152 0.0016 10 6 4.9883 -0.0006 1.2379 11 6 5.6681 -1.3733 1.2808 12 7 6.4343 -1.5542 0.0383 13 6 7.7297 -1.9247 0.0722 14 8 8.3224 -2.1582 -0.9634 15 7 8.3680 -2.0364 1.2540 16 6 9.8029 -2.3300 1.2866 17 6 10.2754 -2.4040 2.7399 18 6 11.7515 -2.7054 2.7735 19 1 12.2980 -2.8320 1.8505 20 6 12.4046 -2.8196 3.9825 21 7 11.7392 -2.6650 5.1063 22 14 14.2342 -3.1939 4.0240 23 1 15.0001 -1.9218 4.0127 24 1 14.5558 -3.9544 5.2583 25 1 14.6010 -4.0031 2.8342 26 6 5.7492 -1.3203 -1.2420 27 6 5.0662 0.0502 -1.1854 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2151 2.3193 -0.0005 32 1 1.3341 4.5114 -0.0050 33 1 3.7902 4.6452 0.0016 34 1 5.1400 2.5873 0.0038 35 1 5.7468 0.7818 1.2618 36 1 4.3285 0.1055 2.0990 37 1 4.9118 -2.1541 1.3615 38 1 6.3415 -1.4220 2.1365 39 1 7.8773 -1.9224 2.0829 40 1 9.9896 -3.2849 0.7952 41 1 10.3470 -1.5414 0.7669 42 1 10.0886 -1.4493 3.2317 43 1 9.7312 -3.1928 3.2593 44 1 12.1986 -2.7456 5.9568 45 1 5.0007 -2.0960 -1.4038 46 1 6.4762 -1.3340 -2.0540 47 1 4.4629 0.1932 -2.0819 48 1 5.8233 0.8323 -1.1280 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273657590.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:41 Heat of formation + Delta-G solvation = -40.476634 kcal Electronic energy + Delta-G solvation = -28435.979750 eV Core-core repulsion = 24490.915390 eV Total energy + Delta-G solvation = -3945.064360 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.77484 -41.04451 -39.32363 -37.96821 -36.65155 -35.66530 -34.80419 -32.41410 -31.56020 -31.09931 -30.75190 -28.21741 -27.52979 -26.46781 -24.77044 -23.75663 -22.99833 -22.80713 -22.05556 -20.50844 -19.43367 -18.93614 -18.49470 -17.45547 -17.20380 -17.01990 -16.82095 -16.63274 -16.48610 -15.99945 -15.72741 -15.56618 -15.35744 -15.25535 -15.20319 -14.91146 -14.45366 -14.27860 -13.77923 -13.71518 -13.30725 -13.14012 -13.09826 -12.93368 -12.63933 -12.56736 -12.51643 -12.41881 -12.30719 -12.23965 -11.93138 -11.79182 -11.66560 -11.46167 -11.15740 -10.60196 -10.22889 -9.85211 -9.73416 -9.35866 -9.06562 -8.23622 -6.33773 0.25179 0.48390 1.41983 1.42844 1.53682 1.60593 2.09035 2.40919 2.46250 2.71371 2.74196 2.94685 3.11123 3.76561 3.91480 3.94109 4.04218 4.10770 4.15787 4.19555 4.25352 4.40660 4.44555 4.45990 4.48545 4.51024 4.53221 4.57018 4.67065 4.71709 4.79495 4.79829 4.81942 4.86051 4.98289 5.29331 5.31697 5.40374 5.42688 5.51658 5.55300 5.58917 5.76995 5.79844 5.83866 5.90135 6.12548 6.17422 6.66481 6.78967 6.94807 7.35288 7.52151 8.88363 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020486 B = 0.002110 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.427661 B =13264.880947 C =13615.928435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.318 6.318 3 C 0.139 3.861 4 C -0.208 4.208 5 C -0.079 4.079 6 C -0.155 4.155 7 C -0.117 4.117 8 C 0.033 3.967 9 N -0.490 5.490 10 C 0.054 3.946 11 C 0.116 3.884 12 N -0.629 5.629 13 C 0.702 3.298 14 O -0.636 6.636 15 N -0.734 5.734 16 C 0.160 3.840 17 C 0.025 3.975 18 C -0.546 4.546 19 H 0.059 0.941 20 C 0.007 3.993 21 N -0.926 5.926 22 Si 0.966 3.034 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.267 1.267 26 C 0.138 3.862 27 C 0.058 3.942 28 H 0.110 0.890 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.139 0.861 34 H 0.120 0.880 35 H 0.036 0.964 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.404 0.596 40 H 0.043 0.957 41 H 0.044 0.956 42 H 0.009 0.991 43 H 0.008 0.992 44 H 0.266 0.734 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.097 0.903 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.102 12.467 -9.289 32.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.231 6.231 3 C 0.093 3.907 4 C -0.227 4.227 5 C -0.097 4.097 6 C -0.174 4.174 7 C -0.138 4.138 8 C -0.061 4.061 9 N -0.212 5.212 10 C -0.073 4.073 11 C -0.007 4.007 12 N -0.367 5.367 13 C 0.403 3.597 14 O -0.518 6.518 15 N -0.391 5.391 16 C 0.036 3.964 17 C -0.012 4.012 18 C -0.584 4.584 19 H 0.077 0.923 20 C -0.192 4.192 21 N -0.566 5.566 22 Si 0.790 3.210 23 H -0.197 1.197 24 H -0.205 1.205 25 H -0.191 1.191 26 C 0.015 3.985 27 C -0.070 4.070 28 H 0.129 0.871 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.170 0.830 32 H 0.170 0.830 33 H 0.157 0.843 34 H 0.138 0.862 35 H 0.055 0.945 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.241 0.759 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.075 0.925 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.115 0.885 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -27.870 11.672 -9.857 31.782 hybrid contribution 1.235 0.562 0.690 1.522 sum -26.635 12.233 -9.167 30.710 Atomic orbital electron populations 1.23318 0.77173 1.05184 1.02072 1.86231 1.22502 1.26352 1.88029 1.19072 0.90744 0.85199 0.95728 1.21499 1.01208 0.91674 1.08314 1.21328 0.94503 0.97921 0.95970 1.21221 0.94442 0.98416 1.03279 1.21577 1.00248 0.92563 0.99363 1.18181 0.90358 0.89121 1.08484 1.59444 1.24660 1.34660 1.02390 1.22486 0.95938 0.96194 0.92724 1.21881 0.95303 0.97758 0.85720 1.47358 1.08355 1.72138 1.08803 1.16045 0.81667 0.78101 0.83880 1.90841 1.67595 1.59632 1.33758 1.45403 1.10631 1.76017 1.07034 1.21093 0.77905 0.98741 0.98666 1.19116 0.95601 0.96297 0.90218 1.21452 0.94869 1.49158 0.92936 0.92301 1.25873 1.03388 0.94787 0.95144 1.70057 1.38072 1.50457 0.97968 0.85436 0.79217 0.78530 0.77815 1.19729 1.20476 1.19117 1.21570 0.95514 0.96674 0.84778 1.22475 0.94709 0.96151 0.93659 0.87130 0.91758 0.91710 0.83003 0.83025 0.84277 0.86172 0.94543 0.88357 0.89268 0.89200 0.75850 0.93866 0.93809 0.97311 0.97347 0.92532 0.90062 0.89907 0.88463 0.94769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.32 -5.86 10.24 -93.71 -0.96 -6.82 16 3 C 0.14 2.54 6.70 22.59 0.15 2.70 16 4 C -0.21 -2.76 9.04 22.34 0.20 -2.56 16 5 C -0.08 -0.95 10.04 22.28 0.22 -0.72 16 6 C -0.15 -2.21 10.04 22.27 0.22 -1.99 16 7 C -0.12 -2.13 8.73 22.38 0.20 -1.93 16 8 C 0.03 0.66 4.68 38.22 0.18 0.84 16 9 N -0.49 -10.40 4.35 -693.86 -3.02 -13.41 16 10 C 0.05 1.12 5.31 86.38 0.46 1.57 16 11 C 0.12 2.60 6.59 86.35 0.57 3.17 16 12 N -0.63 -18.04 3.01 -835.93 -2.52 -20.55 16 13 C 0.70 26.37 8.31 179.05 1.49 27.86 16 14 O -0.64 -28.91 15.83 -4.00 -0.06 -28.97 16 15 N -0.73 -27.63 5.47 -478.54 -2.62 -30.24 16 16 C 0.16 7.22 5.62 86.38 0.49 7.71 16 17 C 0.03 1.30 5.09 29.85 0.15 1.45 16 18 C -0.55 -30.92 9.11 25.60 0.23 -30.69 16 19 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 20 C 0.01 0.39 5.46 84.66 0.46 0.85 16 21 N -0.93 -54.59 13.29 21.45 0.28 -54.30 16 22 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 26 C 0.14 3.45 6.58 86.35 0.57 4.02 16 27 C 0.06 1.24 5.25 86.38 0.45 1.69 16 28 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.44 7.66 -2.38 -0.02 0.43 16 30 H 0.06 0.44 7.66 -2.39 -0.02 0.42 16 31 H 0.15 1.23 6.30 -2.91 -0.02 1.21 16 32 H 0.15 0.94 8.06 -2.91 -0.02 0.91 16 33 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 34 H 0.12 2.23 7.18 -2.91 -0.02 2.21 16 35 H 0.04 0.81 7.62 -2.39 -0.02 0.79 16 36 H 0.10 1.82 8.09 -2.39 -0.02 1.81 16 37 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.09 1.93 5.63 -2.39 -0.01 1.92 16 39 H 0.40 13.17 5.97 -92.71 -0.55 12.61 16 40 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 43 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 44 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 45 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 46 H 0.08 2.34 7.10 -2.39 -0.02 2.32 16 47 H 0.10 1.86 8.09 -2.39 -0.02 1.84 16 48 H 0.03 0.79 7.40 -2.39 -0.02 0.77 16 Total: -1.00 -72.60 387.27 0.70 -71.90 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 0.41 Total: 21.11 kcal Atomic # 6 Polarization: 8.08 SS G_CDS: 7.16 Total: 15.24 kcal Atomic # 7 Polarization: -110.65 SS G_CDS: -7.87 Total: -118.51 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -1.02 Total: -35.79 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -72.60 0.70 -71.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273657590.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.423 kcal (2) G-P(sol) polarization free energy of solvation -72.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds