Wall clock time and date at job start Tue Mar 31 2020 17:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36003 * 116.99994 * 2 1 4 4 C 1.38694 * 119.98560 * 179.97438 * 3 2 1 5 5 C 1.38106 * 120.02507 * 180.02562 * 4 3 2 6 6 C 1.38862 * 119.97659 * 359.97438 * 5 4 3 7 7 N 1.39943 * 120.01911 * 180.02562 * 6 5 4 8 8 C 1.46946 * 111.00209 * 180.02562 * 7 6 5 9 9 C 1.53048 * 109.36866 * 183.18829 * 8 7 6 10 10 N 1.46957 * 109.36154 * 301.60107 * 9 8 7 11 11 C 1.46900 * 111.00146 * 183.18419 * 10 9 8 12 12 C 1.53003 * 109.47527 * 169.99835 * 11 10 9 13 13 N 1.46501 * 109.47352 * 180.02562 * 12 11 10 14 14 C 1.34772 * 119.99823 * 179.72306 * 13 12 11 15 15 O 1.21695 * 120.00176 * 0.27723 * 14 13 12 16 16 C 1.46375 * 120.00131 * 180.27515 * 14 13 12 17 17 H 1.08005 * 119.99733 * 353.94178 * 16 14 13 18 18 C 1.40042 * 120.00170 * 173.94085 * 16 14 13 19 19 N 1.30669 * 120.00455 * 6.15206 * 18 16 14 20 20 Si 1.86803 * 119.99867 * 186.14923 * 18 16 14 21 21 H 1.48498 * 109.47177 * 94.98772 * 20 18 16 22 22 H 1.48502 * 109.47127 * 214.98238 * 20 18 16 23 23 H 1.48493 * 109.47253 * 334.98410 * 20 18 16 24 24 C 1.46960 * 110.88296 * 59.31558 * 10 9 8 25 25 C 1.46957 * 110.99797 * 303.80162 * 7 6 5 26 26 C 1.38855 * 119.96297 * 0.27889 * 6 5 4 27 27 C 1.38111 * 119.98156 * 359.46622 * 26 6 5 28 28 H 1.09004 * 109.46696 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47196 * 299.99364 * 1 2 3 30 30 H 1.09002 * 109.47118 * 59.99888 * 1 2 3 31 31 H 1.08009 * 119.98459 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.01275 * 180.02562 * 5 4 3 33 33 H 1.08998 * 109.49028 * 63.21677 * 8 7 6 34 34 H 1.09000 * 109.49128 * 303.15805 * 8 7 6 35 35 H 1.08998 * 109.49559 * 181.63253 * 9 8 7 36 36 H 1.08997 * 109.48857 * 61.56070 * 9 8 7 37 37 H 1.09002 * 109.47012 * 49.99769 * 11 10 9 38 38 H 1.08994 * 109.47501 * 289.99807 * 11 10 9 39 39 H 1.09002 * 109.47028 * 59.99944 * 12 11 10 40 40 H 1.09008 * 109.46809 * 300.00543 * 12 11 10 41 41 H 0.96992 * 119.99679 * 359.97438 * 13 12 11 42 42 H 0.97000 * 120.00488 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.48489 * 60.65048 * 24 10 9 44 44 H 1.08999 * 109.48814 * 180.71233 * 24 10 9 45 45 H 1.09004 * 109.48666 * 296.77917 * 25 7 6 46 46 H 1.09006 * 109.48755 * 56.84322 * 25 7 6 47 47 H 1.08005 * 120.01097 * 179.70348 * 26 6 5 48 48 H 1.08000 * 119.99103 * 180.24898 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4315 1.2840 0.0005 5 6 4.0594 2.5141 0.0011 6 6 3.3034 3.6789 0.0005 7 7 3.9387 4.9259 0.0005 8 6 2.9554 6.0179 0.0005 9 6 3.6871 7.3597 -0.0798 10 7 4.6062 7.4825 1.0603 11 6 5.2731 8.7914 1.0604 12 6 6.0233 8.9816 2.3802 13 7 6.6879 10.2872 2.3804 14 6 7.4088 10.6761 3.4507 15 8 7.5118 9.9407 4.4148 16 6 8.0678 11.9831 3.4535 17 1 8.0591 12.5941 2.5629 18 6 8.7097 12.4412 4.6107 19 7 8.8253 11.6555 5.6484 20 14 9.4009 14.1756 4.6710 21 1 8.4038 15.0845 5.2913 22 1 10.6475 14.1839 5.4779 23 1 9.7009 14.6371 3.2919 24 6 5.5896 6.3904 1.0603 25 6 4.8573 5.0488 1.1409 26 6 1.9168 3.6058 0.0053 27 6 1.2906 2.3748 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 4.0193 0.3779 0.0005 32 1 5.1379 2.5702 0.0011 33 1 2.3679 5.9783 0.9178 34 1 2.2944 5.9121 -0.8597 35 1 2.9611 8.1722 -0.0507 36 1 4.2529 7.4103 -1.0100 37 1 4.5277 9.5789 0.9493 38 1 5.9789 8.8396 0.2312 39 1 6.7687 8.1940 2.4912 40 1 5.3175 8.9333 3.2095 41 1 6.6061 10.8731 1.6119 42 1 9.2696 11.9729 6.4501 43 1 6.1770 6.4300 0.1430 44 1 6.2505 6.4962 1.9206 45 1 4.2912 4.9984 2.0710 46 1 5.5834 4.2363 1.1123 47 1 1.3281 4.5112 0.0097 48 1 0.2121 2.3177 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274619083.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:29 Heat of formation + Delta-G solvation = -25.613980 kcal Electronic energy + Delta-G solvation = -27616.852852 eV Core-core repulsion = 23672.432986 eV Total energy + Delta-G solvation = -3944.419867 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.81618 -39.60281 -37.91591 -37.08531 -35.32952 -33.19805 -32.25886 -31.93739 -30.78901 -30.11696 -28.50875 -27.33160 -26.22662 -25.08209 -24.25799 -22.51071 -21.77238 -21.26751 -19.96708 -19.63911 -18.58521 -17.36980 -17.07387 -16.52937 -16.04669 -15.55304 -15.35766 -15.26930 -15.21473 -14.99518 -14.61346 -14.40985 -13.99479 -13.87888 -13.82838 -13.63341 -13.41974 -12.86390 -12.81749 -12.45947 -12.25995 -12.19091 -12.04733 -11.64742 -11.46730 -11.43786 -11.19062 -11.14837 -11.07968 -10.92941 -10.81929 -10.50976 -10.37290 -10.20194 -9.57608 -9.28009 -8.83594 -8.37412 -7.76600 -7.60443 -7.48270 -6.18282 -4.62444 1.04116 1.15280 2.97720 3.14660 3.21663 3.25177 3.32484 3.65433 3.72723 4.13690 4.42939 4.54648 4.60500 4.63004 4.71236 4.77019 4.83422 4.90773 4.98536 5.02127 5.07882 5.14953 5.19175 5.24662 5.25663 5.31252 5.40582 5.49576 5.56972 5.62625 5.68425 5.73465 5.77701 5.82651 5.88433 5.92613 6.01765 6.05009 6.31542 6.50498 6.58359 6.74088 6.89705 7.02336 7.04860 7.17575 7.44836 7.94100 8.11315 8.34291 9.03802 9.54749 10.61356 10.79921 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.036207 B = 0.001680 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.146678 B =16658.348427 C =16984.396478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.097 3.903 4 C -0.125 4.125 5 C -0.100 4.100 6 C 0.081 3.919 7 N -0.489 5.489 8 C 0.054 3.946 9 C 0.057 3.943 10 N -0.536 5.536 11 C 0.049 3.951 12 C 0.137 3.863 13 N -0.768 5.768 14 C 0.555 3.445 15 O -0.581 6.581 16 C -0.547 4.547 17 H 0.068 0.932 18 C 0.088 3.912 19 N -0.768 5.768 20 Si 0.907 3.093 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.265 1.265 24 C 0.051 3.949 25 C 0.061 3.939 26 C -0.131 4.131 27 C -0.181 4.181 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.043 0.957 37 H 0.077 0.923 38 H 0.037 0.963 39 H 0.047 0.953 40 H 0.056 0.944 41 H 0.379 0.621 42 H 0.268 0.732 43 H 0.044 0.956 44 H 0.093 0.907 45 H 0.054 0.946 46 H 0.085 0.915 47 H 0.130 0.870 48 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.162 -18.599 -14.659 28.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.051 3.949 4 C -0.144 4.144 5 C -0.120 4.120 6 C -0.016 4.016 7 N -0.205 5.205 8 C -0.073 4.073 9 C -0.072 4.072 10 N -0.262 5.262 11 C -0.079 4.079 12 C 0.012 3.988 13 N -0.425 5.425 14 C 0.359 3.641 15 O -0.463 6.463 16 C -0.584 4.584 17 H 0.086 0.914 18 C -0.132 4.132 19 N -0.397 5.397 20 Si 0.732 3.268 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.189 1.189 24 C -0.078 4.078 25 C -0.065 4.065 26 C -0.152 4.152 27 C -0.200 4.200 28 H 0.116 0.884 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.073 0.927 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.210 0.790 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.111 0.889 45 H 0.073 0.927 46 H 0.104 0.896 47 H 0.148 0.852 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.885 -19.304 -13.724 28.518 hybrid contribution -0.009 1.310 -0.539 1.417 sum -15.894 -17.994 -14.263 27.925 Atomic orbital electron populations 1.23020 0.78624 1.03788 1.01250 1.86075 1.21167 1.26982 1.89253 1.18942 0.92336 0.84086 0.99513 1.20292 0.91318 0.98268 1.04564 1.20633 0.99918 0.90099 1.01382 1.18909 0.91779 0.90130 1.00781 1.59416 1.18872 1.00577 1.41643 1.22339 0.93655 0.89637 1.01668 1.22166 0.96059 0.96576 0.92381 1.62055 1.19271 1.02629 1.42218 1.22285 0.97359 0.90175 0.98042 1.20789 0.95190 0.87782 0.95050 1.46089 1.57149 1.17878 1.21343 1.18211 0.77984 0.87490 0.80414 1.90602 1.65049 1.55950 1.34733 1.20887 1.36455 1.02078 0.99009 0.91410 1.25701 0.94208 0.98251 0.95026 1.70026 1.31906 1.34853 1.02875 0.86367 0.78639 0.82842 0.78936 1.19815 1.20464 1.18915 1.22299 0.93882 0.89409 1.02166 1.22346 0.95254 0.98018 0.90849 1.21120 0.93579 0.97789 1.02726 1.21081 0.99825 0.92014 1.07096 0.88376 0.92748 0.92793 0.85042 0.84938 0.92667 0.89811 0.89827 0.93901 0.90450 0.94454 0.93499 0.92607 0.79018 0.92126 0.93768 0.88851 0.92746 0.89642 0.85225 0.85563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.97 10.50 -19.75 -0.21 -3.17 16 3 C 0.10 0.94 6.69 -39.24 -0.26 0.68 16 4 C -0.13 -1.19 9.98 -39.46 -0.39 -1.59 16 5 C -0.10 -0.97 9.19 -39.40 -0.36 -1.33 16 6 C 0.08 0.84 5.64 -83.70 -0.47 0.37 16 7 N -0.49 -5.17 4.76 -170.91 -0.81 -5.98 16 8 C 0.05 0.52 4.29 -3.77 -0.02 0.51 16 9 C 0.06 0.59 5.61 -3.77 -0.02 0.57 16 10 N -0.54 -6.91 4.71 -234.47 -1.10 -8.01 16 11 C 0.05 0.70 5.07 -3.82 -0.02 0.68 16 12 C 0.14 2.64 5.61 -4.04 -0.02 2.62 16 13 N -0.77 -17.21 5.55 -61.71 -0.34 -17.55 16 14 C 0.56 15.97 7.74 -12.99 -0.10 15.87 16 15 O -0.58 -19.08 15.05 5.19 0.08 -19.00 16 16 C -0.55 -15.56 9.53 -35.63 -0.34 -15.90 16 17 H 0.07 1.76 7.85 -52.48 -0.41 1.35 16 18 C 0.09 2.47 5.49 -17.37 -0.10 2.37 16 19 N -0.77 -23.22 11.85 55.55 0.66 -22.56 16 20 Si 0.91 20.19 29.56 -169.99 -5.03 15.16 16 21 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 C 0.05 0.63 5.41 -3.77 -0.02 0.60 16 25 C 0.06 0.66 5.38 -3.77 -0.02 0.64 16 26 C -0.13 -1.23 8.81 -39.40 -0.35 -1.58 16 27 C -0.18 -1.60 9.03 -39.46 -0.36 -1.96 16 28 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 30 H 0.05 0.24 7.66 -51.93 -0.40 -0.15 16 31 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 32 H 0.13 1.12 7.18 -52.49 -0.38 0.74 16 33 H 0.06 0.55 7.57 -51.93 -0.39 0.16 16 34 H 0.08 0.68 7.18 -51.93 -0.37 0.31 16 35 H 0.08 0.78 8.07 -51.93 -0.42 0.36 16 36 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 1.03 8.03 -51.93 -0.42 0.62 16 38 H 0.04 0.52 8.12 -51.93 -0.42 0.09 16 39 H 0.05 0.96 6.49 -51.93 -0.34 0.62 16 40 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 41 H 0.38 7.35 8.45 -40.82 -0.35 7.01 16 42 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 43 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.09 1.27 6.34 -51.93 -0.33 0.94 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.09 0.82 6.82 -51.93 -0.35 0.47 16 47 H 0.13 1.04 5.81 -52.48 -0.30 0.73 16 48 H 0.13 0.85 6.29 -52.49 -0.33 0.52 16 LS Contribution 383.19 15.07 5.77 5.77 Total: -1.00 -35.70 383.19 -10.12 -45.82 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -7.28 Total: 5.81 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -1.86 Total: 3.71 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -1.60 Total: -54.10 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.13 Total: -22.17 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.70 -10.12 -45.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274619083.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.205 kcal (2) G-P(sol) polarization free energy of solvation -35.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds