Wall clock time and date at job start Tue Mar 31 2020 17:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36003 * 116.99994 * 2 1 4 4 C 1.38694 * 119.98560 * 179.97438 * 3 2 1 5 5 C 1.38106 * 120.02507 * 180.02562 * 4 3 2 6 6 C 1.38862 * 119.97659 * 359.97438 * 5 4 3 7 7 N 1.39943 * 120.01911 * 180.02562 * 6 5 4 8 8 C 1.46946 * 111.00209 * 180.02562 * 7 6 5 9 9 C 1.53048 * 109.36866 * 183.18829 * 8 7 6 10 10 N 1.46957 * 109.36154 * 301.60107 * 9 8 7 11 11 C 1.46900 * 111.00146 * 183.18419 * 10 9 8 12 12 C 1.53003 * 109.47527 * 169.99835 * 11 10 9 13 13 N 1.46501 * 109.47352 * 180.02562 * 12 11 10 14 14 C 1.34772 * 119.99823 * 179.72306 * 13 12 11 15 15 O 1.21695 * 120.00176 * 0.27723 * 14 13 12 16 16 C 1.46375 * 120.00131 * 180.27515 * 14 13 12 17 17 H 1.08005 * 119.99733 * 353.94178 * 16 14 13 18 18 C 1.40042 * 120.00170 * 173.94085 * 16 14 13 19 19 N 1.30669 * 120.00455 * 6.15206 * 18 16 14 20 20 Si 1.86803 * 119.99867 * 186.14923 * 18 16 14 21 21 H 1.48498 * 109.47177 * 94.98772 * 20 18 16 22 22 H 1.48502 * 109.47127 * 214.98238 * 20 18 16 23 23 H 1.48493 * 109.47253 * 334.98410 * 20 18 16 24 24 C 1.46960 * 110.88296 * 59.31558 * 10 9 8 25 25 C 1.46957 * 110.99797 * 303.80162 * 7 6 5 26 26 C 1.38855 * 119.96297 * 0.27889 * 6 5 4 27 27 C 1.38111 * 119.98156 * 359.46622 * 26 6 5 28 28 H 1.09004 * 109.46696 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47196 * 299.99364 * 1 2 3 30 30 H 1.09002 * 109.47118 * 59.99888 * 1 2 3 31 31 H 1.08009 * 119.98459 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.01275 * 180.02562 * 5 4 3 33 33 H 1.08998 * 109.49028 * 63.21677 * 8 7 6 34 34 H 1.09000 * 109.49128 * 303.15805 * 8 7 6 35 35 H 1.08998 * 109.49559 * 181.63253 * 9 8 7 36 36 H 1.08997 * 109.48857 * 61.56070 * 9 8 7 37 37 H 1.09002 * 109.47012 * 49.99769 * 11 10 9 38 38 H 1.08994 * 109.47501 * 289.99807 * 11 10 9 39 39 H 1.09002 * 109.47028 * 59.99944 * 12 11 10 40 40 H 1.09008 * 109.46809 * 300.00543 * 12 11 10 41 41 H 0.96992 * 119.99679 * 359.97438 * 13 12 11 42 42 H 0.97000 * 120.00488 * 180.02562 * 19 18 16 43 43 H 1.09005 * 109.48489 * 60.65048 * 24 10 9 44 44 H 1.08999 * 109.48814 * 180.71233 * 24 10 9 45 45 H 1.09004 * 109.48666 * 296.77917 * 25 7 6 46 46 H 1.09006 * 109.48755 * 56.84322 * 25 7 6 47 47 H 1.08005 * 120.01097 * 179.70348 * 26 6 5 48 48 H 1.08000 * 119.99103 * 180.24898 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 3.4315 1.2840 0.0005 5 6 4.0594 2.5141 0.0011 6 6 3.3034 3.6789 0.0005 7 7 3.9387 4.9259 0.0005 8 6 2.9554 6.0179 0.0005 9 6 3.6871 7.3597 -0.0798 10 7 4.6062 7.4825 1.0603 11 6 5.2731 8.7914 1.0604 12 6 6.0233 8.9816 2.3802 13 7 6.6879 10.2872 2.3804 14 6 7.4088 10.6761 3.4507 15 8 7.5118 9.9407 4.4148 16 6 8.0678 11.9831 3.4535 17 1 8.0591 12.5941 2.5629 18 6 8.7097 12.4412 4.6107 19 7 8.8253 11.6555 5.6484 20 14 9.4009 14.1756 4.6710 21 1 8.4038 15.0845 5.2913 22 1 10.6475 14.1839 5.4779 23 1 9.7009 14.6371 3.2919 24 6 5.5896 6.3904 1.0603 25 6 4.8573 5.0488 1.1409 26 6 1.9168 3.6058 0.0053 27 6 1.2906 2.3748 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 4.0193 0.3779 0.0005 32 1 5.1379 2.5702 0.0011 33 1 2.3679 5.9783 0.9178 34 1 2.2944 5.9121 -0.8597 35 1 2.9611 8.1722 -0.0507 36 1 4.2529 7.4103 -1.0100 37 1 4.5277 9.5789 0.9493 38 1 5.9789 8.8396 0.2312 39 1 6.7687 8.1940 2.4912 40 1 5.3175 8.9333 3.2095 41 1 6.6061 10.8731 1.6119 42 1 9.2696 11.9729 6.4501 43 1 6.1770 6.4300 0.1430 44 1 6.2505 6.4962 1.9206 45 1 4.2912 4.9984 2.0710 46 1 5.5834 4.2363 1.1123 47 1 1.3281 4.5112 0.0097 48 1 0.2121 2.3177 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274619083.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:27 Heat of formation + Delta-G solvation = -52.998663 kcal Electronic energy + Delta-G solvation = -27618.040341 eV Core-core repulsion = 23672.432986 eV Total energy + Delta-G solvation = -3945.607355 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.55840 -40.39153 -39.44985 -38.44636 -36.39669 -34.96679 -34.35031 -32.70921 -31.60324 -31.20031 -29.62220 -28.40106 -27.60740 -26.27915 -25.12478 -23.50249 -22.67167 -22.28640 -21.69423 -20.81823 -19.30078 -19.14546 -18.06573 -17.43959 -17.24059 -16.62354 -16.59048 -16.48013 -16.23406 -15.93302 -15.85289 -15.50341 -15.24288 -15.17405 -14.98109 -14.59487 -14.25971 -14.21332 -14.03052 -13.51538 -13.47679 -13.12943 -13.06402 -12.84586 -12.81174 -12.68044 -12.58209 -12.39317 -12.31353 -12.07559 -11.99997 -11.90171 -11.81761 -11.52062 -10.92814 -10.33027 -9.98246 -9.88784 -9.49160 -9.38685 -8.50891 -8.29916 -6.85255 0.34678 0.42308 1.41276 1.42553 1.58659 2.24462 2.41389 2.47328 2.56181 2.65166 2.91264 3.39226 3.61131 3.72481 3.80834 3.90029 3.91450 4.03707 4.12778 4.19674 4.27291 4.31026 4.38480 4.39526 4.40637 4.45797 4.53916 4.54679 4.57113 4.73344 4.75082 4.84199 4.84888 4.90532 4.99300 5.01378 5.05634 5.10235 5.26656 5.32834 5.35721 5.61401 5.86319 5.90676 5.93801 6.07359 6.21822 6.24820 6.27422 6.50981 6.86990 7.55127 8.49009 8.67337 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.036207 B = 0.001680 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.146678 B =16658.348427 C =16984.396478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.087 3.913 4 C -0.137 4.137 5 C -0.106 4.106 6 C 0.064 3.936 7 N -0.492 5.492 8 C 0.056 3.944 9 C 0.058 3.942 10 N -0.548 5.548 11 C 0.068 3.932 12 C 0.143 3.857 13 N -0.754 5.754 14 C 0.536 3.464 15 O -0.634 6.634 16 C -0.574 4.574 17 H 0.090 0.910 18 C 0.028 3.972 19 N -0.823 5.823 20 Si 1.000 3.000 21 H -0.263 1.263 22 H -0.273 1.273 23 H -0.247 1.247 24 C 0.053 3.947 25 C 0.068 3.932 26 C -0.134 4.134 27 C -0.183 4.183 28 H 0.116 0.884 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.051 0.949 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.045 0.955 37 H 0.093 0.907 38 H 0.048 0.952 39 H 0.030 0.970 40 H 0.030 0.970 41 H 0.396 0.604 42 H 0.275 0.725 43 H 0.046 0.954 44 H 0.072 0.928 45 H 0.041 0.959 46 H 0.095 0.905 47 H 0.144 0.856 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.314 -17.533 -16.588 29.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.042 3.958 4 C -0.156 4.156 5 C -0.126 4.126 6 C -0.033 4.033 7 N -0.208 5.208 8 C -0.071 4.071 9 C -0.069 4.069 10 N -0.273 5.273 11 C -0.061 4.061 12 C 0.018 3.982 13 N -0.409 5.409 14 C 0.340 3.660 15 O -0.522 6.522 16 C -0.611 4.611 17 H 0.108 0.892 18 C -0.187 4.187 19 N -0.452 5.452 20 Si 0.819 3.181 21 H -0.188 1.188 22 H -0.198 1.198 23 H -0.170 1.170 24 C -0.075 4.075 25 C -0.058 4.058 26 C -0.155 4.155 27 C -0.202 4.202 28 H 0.135 0.865 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.158 0.842 32 H 0.157 0.843 33 H 0.069 0.931 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.063 0.937 37 H 0.112 0.888 38 H 0.066 0.934 39 H 0.048 0.952 40 H 0.049 0.951 41 H 0.230 0.770 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.091 0.909 45 H 0.059 0.941 46 H 0.113 0.887 47 H 0.161 0.839 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.082 -18.253 -15.728 29.536 hybrid contribution 0.263 0.843 0.040 0.884 sum -16.820 -17.410 -15.688 28.847 Atomic orbital electron populations 1.23295 0.76752 1.05389 1.02068 1.86054 1.23203 1.26873 1.89174 1.19151 0.92634 0.84694 0.99350 1.20484 0.91773 0.98608 1.04761 1.20766 1.00376 0.90162 1.01304 1.19044 0.92385 0.90026 1.01835 1.59446 1.19204 1.01081 1.41107 1.22383 0.93526 0.88866 1.02326 1.22250 0.95743 0.97708 0.91219 1.62016 1.19459 1.01870 1.43990 1.22029 0.97498 0.91646 0.94885 1.20797 0.94404 0.85676 0.97359 1.45719 1.55760 1.19119 1.20340 1.18649 0.78565 0.87742 0.80995 1.90555 1.67121 1.57399 1.37096 1.21449 1.36840 1.02400 1.00415 0.89189 1.27007 0.93954 1.03733 0.94043 1.70197 1.33064 1.37964 1.03994 0.84977 0.77779 0.75471 0.79858 1.18779 1.19816 1.16994 1.22224 0.93855 0.90171 1.01241 1.22238 0.95451 0.97420 0.90698 1.21326 0.93360 0.98597 1.02221 1.21323 1.00953 0.91507 1.06419 0.86546 0.92034 0.91778 0.84229 0.84326 0.93096 0.87839 0.88235 0.93655 0.88835 0.93407 0.95152 0.95124 0.76980 0.91556 0.93610 0.90916 0.94059 0.88659 0.83863 0.83470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.29 16 2 O -0.34 -5.91 10.50 -93.58 -0.98 -6.89 16 3 C 0.09 1.62 6.69 22.49 0.15 1.77 16 4 C -0.14 -2.56 9.98 22.35 0.22 -2.33 16 5 C -0.11 -2.00 9.19 22.39 0.21 -1.80 16 6 C 0.06 1.26 5.64 38.14 0.22 1.48 16 7 N -0.49 -9.88 4.76 -694.64 -3.31 -13.19 16 8 C 0.06 0.97 4.29 86.31 0.37 1.35 16 9 C 0.06 1.10 5.61 86.31 0.48 1.59 16 10 N -0.55 -13.69 4.71 -895.72 -4.22 -17.91 16 11 C 0.07 1.85 5.07 86.30 0.44 2.29 16 12 C 0.14 5.64 5.61 86.38 0.48 6.12 16 13 N -0.75 -34.12 5.55 -467.39 -2.59 -36.71 16 14 C 0.54 31.67 7.74 86.36 0.67 32.34 16 15 O -0.63 -43.58 15.05 -4.33 -0.07 -43.64 16 16 C -0.57 -32.77 9.53 24.83 0.24 -32.53 16 17 H 0.09 4.55 7.85 -2.91 -0.02 4.53 16 18 C 0.03 1.55 5.49 85.30 0.47 2.02 16 19 N -0.82 -50.98 11.85 21.83 0.26 -50.72 16 20 Si 1.00 40.96 29.56 68.60 2.03 42.99 16 21 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 22 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 23 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 24 C 0.05 1.33 5.41 86.31 0.47 1.79 16 25 C 0.07 1.48 5.38 86.31 0.46 1.94 16 26 C -0.13 -2.31 8.81 22.39 0.20 -2.12 16 27 C -0.18 -2.96 9.03 22.35 0.20 -2.76 16 28 H 0.12 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.06 0.47 7.66 -2.39 -0.02 0.45 16 30 H 0.06 0.45 7.66 -2.39 -0.02 0.43 16 31 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.14 2.32 7.18 -2.91 -0.02 2.29 16 33 H 0.05 0.94 7.57 -2.39 -0.02 0.92 16 34 H 0.10 1.41 7.18 -2.39 -0.02 1.39 16 35 H 0.10 1.58 8.07 -2.39 -0.02 1.56 16 36 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.09 2.30 8.03 -2.39 -0.02 2.28 16 38 H 0.05 1.24 8.12 -2.39 -0.02 1.22 16 39 H 0.03 1.30 6.49 -2.39 -0.02 1.28 16 40 H 0.03 1.36 8.14 -2.38 -0.02 1.34 16 41 H 0.40 15.04 8.45 -92.71 -0.78 14.25 16 42 H 0.27 15.36 8.29 -92.71 -0.77 14.59 16 43 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 44 H 0.07 2.09 6.34 -2.39 -0.02 2.07 16 45 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.10 1.84 6.82 -2.38 -0.02 1.83 16 47 H 0.14 1.98 5.81 -2.91 -0.02 1.96 16 48 H 0.15 1.64 6.29 -2.91 -0.02 1.63 16 Total: -1.00 -79.90 383.19 -2.30 -82.20 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: 0.19 Total: 31.42 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 6.39 Total: 12.44 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -9.86 Total: -118.53 kcal Atomic # 8 Polarization: -49.48 SS G_CDS: -1.05 Total: -50.53 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -79.90 -2.30 -82.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274619083.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.206 kcal (2) G-P(sol) polarization free energy of solvation -79.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds