Wall clock time and date at job start Tue Mar 31 2020 17:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99761 * 2 1 4 4 C 1.53006 * 109.46937 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47178 * 179.97438 * 4 3 2 6 6 C 1.38847 * 120.75130 * 89.99590 * 5 4 3 7 7 C 1.38064 * 119.30963 * 179.97438 * 6 5 4 8 8 N 1.31936 * 120.85156 * 0.02562 * 7 6 5 9 9 C 1.32350 * 121.63604 * 0.02562 * 8 7 6 10 10 N 1.39397 * 119.70145 * 179.97438 * 9 8 7 11 11 C 1.34775 * 119.99413 * 5.47524 * 10 9 8 12 12 O 1.21579 * 120.00579 * 354.90230 * 11 10 9 13 13 N 1.34779 * 119.99553 * 174.91022 * 11 10 9 14 14 C 1.46505 * 119.99599 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.46789 * 269.99696 * 14 13 11 16 16 H 1.08003 * 120.00397 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99852 * 179.72781 * 15 14 13 18 18 N 1.31517 * 119.99826 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00270 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46699 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47121 * 119.99676 * 19 17 15 22 22 H 1.48497 * 109.47295 * 239.99938 * 19 17 15 23 23 C 1.46493 * 120.00103 * 359.97438 * 13 11 10 24 24 C 1.52999 * 109.47215 * 270.00269 * 23 13 11 25 25 C 1.53001 * 117.49836 * 243.62285 * 24 23 13 26 26 C 1.52997 * 60.00183 * 252.51106 * 25 24 23 27 27 C 1.38349 * 120.74945 * 270.25830 * 5 4 3 28 28 H 1.08997 * 109.46832 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46931 * 300.00001 * 1 2 3 30 30 H 1.08998 * 109.47368 * 60.00102 * 1 2 3 31 31 H 1.08995 * 109.47129 * 60.00025 * 3 2 1 32 32 H 1.08995 * 109.47159 * 299.99874 * 3 2 1 33 33 H 1.09004 * 109.46633 * 60.00020 * 4 3 2 34 34 H 1.08995 * 109.47117 * 299.99929 * 4 3 2 35 35 H 1.08005 * 120.34259 * 0.02562 * 6 5 4 36 36 H 1.08004 * 119.57240 * 180.02562 * 7 6 5 37 37 H 0.96996 * 119.99794 * 185.46423 * 10 9 8 38 38 H 1.09000 * 109.46791 * 150.00053 * 14 13 11 39 39 H 1.09001 * 109.47401 * 29.99656 * 14 13 11 40 40 H 0.97005 * 119.99996 * 180.02562 * 18 17 15 41 41 H 1.08992 * 109.47357 * 30.00518 * 23 13 11 42 42 H 1.09005 * 109.46861 * 150.00617 * 23 13 11 43 43 H 1.09000 * 115.54997 * 29.32996 * 24 23 13 44 44 H 1.09002 * 117.49853 * 0.02562 * 25 24 23 45 45 H 1.08996 * 117.50107 * 145.02138 * 25 24 23 46 46 H 1.09000 * 117.50175 * 252.51254 * 26 25 24 47 47 H 1.08998 * 117.50152 * 107.48633 * 26 25 24 48 48 H 1.07995 * 120.45092 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1484 2.5614 0.0000 6 6 4.4367 3.2108 1.1930 7 6 4.9986 4.4714 1.1576 8 7 5.2626 5.0625 0.0080 9 6 5.0016 4.4768 -1.1498 10 7 5.2966 5.1387 -2.3406 11 6 5.9450 6.3199 -2.3122 12 8 6.1905 6.8532 -1.2476 13 7 6.3211 6.9099 -3.4641 14 6 7.0254 8.1942 -3.4332 15 6 6.0226 9.3182 -3.4787 16 1 4.9663 9.0980 -3.5264 17 6 6.4534 10.6278 -3.4545 18 7 7.7394 10.8959 -3.3921 19 14 5.2105 12.0211 -3.5116 20 1 3.8382 11.4577 -3.5806 21 1 5.3435 12.8535 -2.2891 22 1 5.4617 12.8596 -4.7112 23 6 6.0256 6.2672 -4.7469 24 6 7.1859 5.3492 -5.1366 25 6 7.9645 5.6953 -6.4074 26 6 7.0181 4.4932 -6.3936 27 6 4.4317 3.2090 -1.1893 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8574 0.6436 -0.8892 34 1 3.8568 0.6440 0.8908 35 1 4.2243 2.7343 2.1387 36 1 5.2249 4.9802 2.0830 37 1 5.0353 4.7490 -3.1896 38 1 7.6898 8.2649 -4.2944 39 1 7.6103 8.2660 -2.5162 40 1 8.0425 11.8172 -3.3746 41 1 5.1120 5.6797 -4.6570 42 1 5.8929 7.0305 -5.5137 43 1 7.7444 4.9187 -4.3054 44 1 7.6503 6.5772 -6.9656 45 1 9.0354 5.4926 -6.4125 46 1 7.4664 3.4997 -6.3895 47 1 6.0810 4.5840 -6.9429 48 1 4.2162 2.7351 -2.1354 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287196167.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:45 Heat of formation + Delta-G solvation = 4.753810 kcal Electronic energy + Delta-G solvation = -28281.378606 eV Core-core repulsion = 24338.275585 eV Total energy + Delta-G solvation = -3943.103020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.65115 -39.23298 -38.20697 -37.23525 -35.04638 -34.20877 -34.01697 -32.46043 -30.03755 -29.78350 -27.77975 -26.77853 -26.04847 -24.18345 -23.52873 -22.77757 -22.23172 -21.39395 -20.68965 -19.25480 -18.00500 -17.12776 -16.63289 -16.44763 -16.40054 -15.96654 -15.60699 -15.42122 -15.25560 -15.03938 -14.68170 -14.31445 -14.18509 -13.78449 -13.46333 -13.34752 -12.90788 -12.73006 -12.43885 -12.37605 -12.16888 -12.08898 -11.58698 -11.51254 -11.48273 -11.39243 -11.20333 -10.87823 -10.63702 -10.41540 -10.31380 -10.10266 -10.03086 -9.81106 -9.62441 -9.54132 -9.52589 -8.64927 -8.39908 -8.09824 -7.60099 -6.00623 -4.04772 1.25091 1.34807 2.99300 3.31800 3.37387 3.39727 3.43976 3.75473 3.90025 4.22001 4.26028 4.49535 4.55559 4.61172 4.78862 4.80649 4.94947 4.98539 5.03986 5.05352 5.07242 5.11607 5.15330 5.16316 5.27030 5.30355 5.33893 5.54936 5.57115 5.61236 5.68639 5.71441 5.80448 5.88823 5.96507 6.04535 6.23648 6.27913 6.42492 6.48577 6.70565 6.76480 7.04945 7.35032 7.55127 7.62898 7.96962 8.25234 8.27675 8.67324 8.96784 9.34980 9.60754 11.07257 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011317 B = 0.002795 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.606807 B =10017.090112 C =11208.410682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.066 3.934 4 C -0.076 4.076 5 C -0.015 4.015 6 C -0.217 4.217 7 C 0.139 3.861 8 N -0.470 5.470 9 C 0.395 3.605 10 N -0.676 5.676 11 C 0.687 3.313 12 O -0.520 6.520 13 N -0.606 5.606 14 C 0.263 3.737 15 C -0.524 4.524 16 H 0.056 0.944 17 C 0.061 3.939 18 N -0.894 5.894 19 Si 0.897 3.103 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.284 1.284 23 C 0.143 3.857 24 C -0.170 4.170 25 C -0.171 4.171 26 C -0.182 4.182 27 C -0.217 4.217 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.130 0.870 36 H 0.156 0.844 37 H 0.407 0.593 38 H 0.035 0.965 39 H 0.044 0.956 40 H 0.262 0.738 41 H 0.060 0.940 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.523 -22.100 1.126 24.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.010 4.010 4 C -0.113 4.113 5 C -0.023 4.023 6 C -0.239 4.239 7 C -0.020 4.020 8 N -0.185 5.185 9 C 0.162 3.838 10 N -0.325 5.325 11 C 0.388 3.612 12 O -0.389 6.389 13 N -0.341 5.341 14 C 0.144 3.856 15 C -0.563 4.563 16 H 0.075 0.925 17 C -0.141 4.141 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.210 1.210 23 C 0.018 3.982 24 C -0.190 4.190 25 C -0.208 4.208 26 C -0.220 4.220 27 C -0.241 4.241 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.148 0.852 36 H 0.174 0.826 37 H 0.245 0.755 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.107 0.893 43 H 0.120 0.880 44 H 0.116 0.884 45 H 0.109 0.891 46 H 0.108 0.892 47 H 0.112 0.888 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.636 -20.712 1.812 22.513 hybrid contribution -1.312 0.083 -0.579 1.437 sum -9.948 -20.629 1.234 22.936 Atomic orbital electron populations 1.22745 0.80797 1.02759 1.00170 1.87843 1.19888 1.28063 1.95503 1.22492 0.93095 0.84540 1.00898 1.20431 0.93136 0.93194 1.04574 1.19688 0.95217 0.94846 0.92588 1.21873 1.06053 0.97736 0.98238 1.22718 0.92104 0.91399 0.95740 1.67836 1.18848 1.34995 0.96788 1.18282 0.91174 0.87862 0.86461 1.43224 1.59763 1.22827 1.06717 1.16048 0.79704 0.79922 0.85533 1.91021 1.57376 1.62495 1.28040 1.47614 1.60380 1.23974 1.02173 1.19220 0.91640 0.76144 0.98623 1.21497 0.93439 0.90780 1.50603 0.92529 1.24918 0.95296 0.98684 0.95180 1.69945 1.13293 1.19558 1.50549 0.86464 0.81454 0.82066 0.77544 1.19893 1.20894 1.21044 1.20957 0.93990 0.95173 0.88046 1.22946 1.01753 1.02058 0.92221 1.22983 0.97709 0.99177 1.00944 1.22935 1.01769 0.95662 1.01632 1.21246 1.08199 0.95421 0.99241 0.89578 0.93992 0.93958 0.92864 0.92890 0.89762 0.89641 0.85159 0.82642 0.75501 0.94686 0.93778 0.92825 0.92216 0.89343 0.87958 0.88355 0.89118 0.89154 0.88822 0.85054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.62 10.70 -35.23 -0.38 -3.99 16 3 C 0.07 0.56 5.92 37.16 0.22 0.78 16 4 C -0.08 -0.64 5.76 -27.88 -0.16 -0.80 16 5 C -0.02 -0.16 5.17 -104.36 -0.54 -0.70 16 6 C -0.22 -2.41 9.81 -39.42 -0.39 -2.80 16 7 C 0.14 1.97 11.17 -17.57 -0.20 1.78 16 8 N -0.47 -8.75 7.89 -12.37 -0.10 -8.85 16 9 C 0.40 6.47 7.42 -154.71 -1.15 5.32 16 10 N -0.68 -11.33 5.27 -15.81 -0.08 -11.42 16 11 C 0.69 15.09 8.24 -86.92 -0.72 14.38 16 12 O -0.52 -13.92 14.18 5.30 0.08 -13.85 16 13 N -0.61 -12.89 2.46 -180.81 -0.44 -13.34 16 14 C 0.26 6.90 5.16 -5.19 -0.03 6.87 16 15 C -0.52 -14.94 9.39 -34.44 -0.32 -15.27 16 16 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 19 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 20 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.14 2.27 5.50 -4.05 -0.02 2.25 16 24 C -0.17 -2.34 6.01 -90.62 -0.54 -2.88 16 25 C -0.17 -2.19 10.18 -26.73 -0.27 -2.46 16 26 C -0.18 -1.94 10.25 -26.73 -0.27 -2.21 16 27 C -0.22 -2.63 9.64 -39.24 -0.38 -3.00 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 34 H 0.09 0.66 8.10 -51.93 -0.42 0.24 16 35 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 36 H 0.16 1.86 8.06 -52.48 -0.42 1.44 16 37 H 0.41 5.29 6.39 -40.82 -0.26 5.03 16 38 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 39 H 0.04 1.32 7.42 -51.93 -0.39 0.94 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.06 0.77 6.29 -51.93 -0.33 0.45 16 42 H 0.09 1.47 7.81 -51.93 -0.41 1.06 16 43 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 44 H 0.10 1.29 8.03 -51.93 -0.42 0.87 16 45 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 404.53 15.07 6.10 6.10 Total: -1.00 -35.94 404.53 -10.54 -46.48 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.67 Total: 3.52 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -3.75 Total: 4.23 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.11 Total: -59.60 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.30 Total: -17.84 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.94 -10.54 -46.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287196167.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.238 kcal (2) G-P(sol) polarization free energy of solvation -35.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds