Wall clock time and date at job start Tue Mar 31 2020 17:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42902 * 113.99669 * 2 1 4 4 C 1.52996 * 109.46840 * 209.99927 * 3 2 1 5 5 C 1.53006 * 109.46947 * 299.99672 * 4 3 2 6 6 C 1.52997 * 109.47019 * 300.00109 * 5 4 3 7 7 C 1.53006 * 109.46646 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46626 * 174.99857 * 7 6 5 9 9 N 1.46506 * 109.46691 * 179.97438 * 8 7 6 10 10 S 1.65602 * 119.99884 * 165.00184 * 9 8 7 11 11 O 1.42097 * 104.27810 * 181.07556 * 10 9 8 12 12 O 1.42106 * 104.27914 * 308.93327 * 10 9 8 13 13 C 1.81400 * 104.45158 * 65.00067 * 10 9 8 14 14 C 1.52989 * 109.47661 * 180.02562 * 13 10 9 15 15 C 1.52996 * 109.47818 * 180.02562 * 14 13 10 16 16 C 1.50696 * 109.47594 * 179.97438 * 15 14 13 17 17 H 1.07994 * 119.99755 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99976 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99786 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99773 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47434 * 89.99979 * 20 18 16 22 22 H 1.48504 * 109.46827 * 209.99619 * 20 18 16 23 23 H 1.48498 * 109.47139 * 329.99589 * 20 18 16 24 24 C 1.52996 * 109.47350 * 60.00137 * 6 5 4 25 25 C 1.52996 * 109.46951 * 299.99902 * 24 6 5 26 26 H 1.09002 * 109.46302 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47049 * 299.99821 * 1 2 3 28 28 H 1.08998 * 109.46963 * 60.00293 * 1 2 3 29 29 H 1.09002 * 109.47178 * 329.99809 * 3 2 1 30 30 H 1.09006 * 109.46822 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.47474 * 59.99996 * 4 3 2 32 32 H 1.09004 * 109.46482 * 180.02562 * 5 4 3 33 33 H 1.08990 * 109.46745 * 60.00426 * 5 4 3 34 34 H 1.09000 * 109.47175 * 299.99937 * 6 5 4 35 35 H 1.08993 * 109.46955 * 295.00330 * 7 6 5 36 36 H 1.09000 * 109.47050 * 55.00158 * 7 6 5 37 37 H 1.08993 * 109.47839 * 299.99931 * 8 7 6 38 38 H 1.09000 * 109.47160 * 60.00369 * 8 7 6 39 39 H 0.96995 * 120.00546 * 345.00667 * 9 8 7 40 40 H 1.09002 * 109.47071 * 300.00406 * 13 10 9 41 41 H 1.09002 * 109.46859 * 59.99902 * 13 10 9 42 42 H 1.09002 * 109.47182 * 300.00305 * 14 13 10 43 43 H 1.09002 * 109.47091 * 60.00011 * 14 13 10 44 44 H 1.09002 * 109.46871 * 300.00346 * 15 14 13 45 45 H 1.09002 * 109.46903 * 59.99746 * 15 14 13 46 46 H 0.97008 * 119.99662 * 180.02562 * 19 18 16 47 47 H 1.09006 * 109.46822 * 59.99467 * 24 6 5 48 48 H 1.08997 * 109.47474 * 179.97438 * 24 6 5 49 49 H 1.08993 * 109.47243 * 299.99585 * 25 24 6 50 50 H 1.09007 * 109.46984 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2633 -0.7212 5 6 4.2927 0.2893 0.0002 6 6 4.5001 0.7554 1.4426 7 6 5.4334 -0.2190 2.1641 8 6 5.7404 0.3122 3.5657 9 7 6.6336 -0.6211 4.2567 10 16 7.4289 -0.1438 5.6287 11 8 8.2045 -1.2763 5.9960 12 8 8.0488 1.0823 5.2659 13 6 6.1094 0.1441 6.8398 14 6 6.7240 0.5959 8.1659 15 6 5.6113 0.8382 9.1876 16 6 6.2167 1.2826 10.4941 17 1 7.2881 1.3827 10.5863 18 6 5.4029 1.5615 11.5716 19 7 4.0983 1.4400 11.4591 20 14 6.1534 2.1131 13.1908 21 1 6.2627 3.5939 13.2069 22 1 5.2894 1.6683 14.3138 23 1 7.5047 1.5154 13.3391 24 6 3.1514 0.7976 2.1638 25 6 2.2177 1.7715 1.4425 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.3450 1.9994 -0.5139 30 1 3.8024 2.2591 -0.7208 31 1 3.2112 0.9314 -1.7489 32 1 5.2537 0.2597 -0.5135 33 1 3.8494 -0.7063 0.0001 34 1 4.9434 1.7512 1.4425 35 1 4.9513 -1.1934 2.2423 36 1 6.3617 -0.3170 1.6013 37 1 6.2225 1.2866 3.4875 38 1 4.8121 0.4103 4.1285 39 1 6.7593 -1.5184 3.9107 40 1 5.4380 0.9183 6.4684 41 1 5.5500 -0.7786 6.9938 42 1 7.3957 -0.1780 8.5375 43 1 7.2832 1.5188 8.0116 44 1 4.9393 1.6119 8.8163 45 1 5.0525 -0.0849 9.3419 46 1 3.5257 1.6365 12.2171 47 1 2.7081 -0.1983 2.1638 48 1 3.2992 1.1291 3.1916 49 1 2.6609 2.7672 1.4425 50 1 1.2566 1.8012 1.9561 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352066874.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:59 Heat of formation + Delta-G solvation = -164.278284 kcal Electronic energy + Delta-G solvation = -26879.309327 eV Core-core repulsion = 23032.027725 eV Total energy + Delta-G solvation = -3847.281602 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.181 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.89432 -37.39479 -36.82189 -35.73228 -35.32391 -34.65538 -32.17850 -31.96883 -31.10473 -27.85251 -27.78239 -26.68000 -23.82204 -23.68043 -22.74836 -21.20911 -20.60650 -19.97030 -19.08491 -17.36315 -16.69497 -16.67765 -16.44688 -16.15826 -15.71549 -15.70545 -15.19701 -14.85419 -14.48624 -14.44016 -14.14930 -14.00237 -13.82952 -13.03887 -12.92213 -12.62100 -12.58112 -12.45166 -12.27546 -12.09203 -11.92257 -11.78495 -11.74767 -11.65595 -11.52791 -11.38818 -11.36847 -11.18613 -10.91816 -10.83949 -10.71706 -10.58298 -10.41512 -10.31146 -9.94024 -9.79712 -9.59914 -9.29252 -9.05872 -8.40465 -6.05474 -4.08348 0.51196 2.90026 3.30681 3.36740 3.41016 3.44039 3.98369 4.31138 4.36953 4.40776 4.42857 4.49184 4.68722 4.77019 4.81011 4.94200 5.00346 5.03074 5.07571 5.16166 5.21083 5.21861 5.26291 5.27802 5.29823 5.31149 5.34774 5.47438 5.56223 5.63316 5.68895 5.73424 5.86037 5.91107 5.93783 5.96853 6.02135 6.09183 6.27076 6.28582 6.46646 6.87318 6.88238 6.95811 7.57568 7.67633 7.92756 8.33443 8.97959 9.56288 11.05778 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013013 B = 0.002281 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.229109 B =12272.232668 C =13900.656019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.379 6.379 3 C 0.088 3.912 4 C -0.115 4.115 5 C -0.109 4.109 6 C -0.086 4.086 7 C -0.119 4.119 8 C 0.111 3.889 9 N -1.125 6.125 10 S 2.602 3.398 11 O -0.965 6.965 12 O -0.964 6.964 13 C -0.609 4.609 14 C -0.106 4.106 15 C 0.030 3.970 16 C -0.526 4.526 17 H 0.058 0.942 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.114 4.114 25 C -0.142 4.142 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.038 0.962 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.414 0.586 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.020 0.980 45 H 0.020 0.980 46 H 0.261 0.739 47 H 0.071 0.929 48 H 0.066 0.934 49 H 0.072 0.928 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.987 -2.199 -27.343 28.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.298 6.298 3 C 0.030 3.970 4 C -0.153 4.153 5 C -0.147 4.147 6 C -0.105 4.105 7 C -0.158 4.158 8 C -0.015 4.015 9 N -0.884 5.884 10 S 2.698 3.302 11 O -0.956 6.956 12 O -0.953 6.953 13 C -0.741 4.741 14 C -0.145 4.145 15 C -0.008 4.008 16 C -0.564 4.564 17 H 0.076 0.924 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.722 3.278 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.152 4.152 25 C -0.180 4.180 26 H 0.102 0.898 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.247 0.753 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.038 0.962 45 H 0.039 0.961 46 H 0.071 0.929 47 H 0.090 0.910 48 H 0.085 0.915 49 H 0.090 0.910 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.110 -2.071 -27.118 27.673 hybrid contribution -0.763 0.190 0.952 1.235 sum -5.873 -1.881 -26.166 26.883 Atomic orbital electron populations 1.22774 0.81483 1.02641 0.99773 1.87929 1.19160 1.27712 1.95026 1.22142 0.94732 0.84553 0.95584 1.21630 0.94089 1.00461 0.99096 1.21475 0.98823 0.99792 0.94566 1.21147 0.95316 0.99267 0.94807 1.21791 0.99958 0.99561 0.94522 1.21417 0.93303 0.92979 0.93830 1.55694 1.63865 1.24263 1.44539 1.05231 0.76199 0.74203 0.74594 1.93574 1.67414 1.51400 1.83166 1.93562 1.73420 1.46937 1.81421 1.30539 1.18022 1.11233 1.14280 1.21494 1.00983 1.00669 0.91384 1.19062 0.92385 0.97356 0.91989 1.21260 0.93446 1.45529 0.96164 0.92363 1.25023 0.94840 0.95496 0.99051 1.69959 1.03036 1.49126 1.31347 0.86552 0.79203 0.78951 0.83083 1.20572 1.21183 1.19742 1.21575 0.94492 1.00374 0.98729 1.22026 1.00337 0.99669 0.95956 0.89777 0.94080 0.94328 0.92509 0.90722 0.91512 0.92066 0.91008 0.90870 0.91059 0.91076 0.90258 0.91544 0.75265 0.85596 0.85319 0.91580 0.91577 0.96151 0.96129 0.92915 0.91020 0.91536 0.90965 0.91838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.82 101.05 1.09 1.28 16 2 O -0.38 -3.15 9.00 -35.23 -0.32 -3.46 16 3 C 0.09 0.61 2.92 -26.73 -0.08 0.53 16 4 C -0.12 -0.74 5.66 -26.73 -0.15 -0.89 16 5 C -0.11 -0.76 5.06 -26.73 -0.14 -0.89 16 6 C -0.09 -0.62 2.19 -90.62 -0.20 -0.82 16 7 C -0.12 -0.91 4.82 -26.73 -0.13 -1.04 16 8 C 0.11 1.04 5.89 -4.04 -0.02 1.01 16 9 N -1.13 -12.02 5.89 -10.61 -0.06 -12.08 16 10 S 2.60 38.23 5.46 -107.50 -0.59 37.65 16 11 O -0.97 -17.10 18.08 -57.54 -1.04 -18.14 16 12 O -0.96 -17.01 17.50 -57.54 -1.01 -18.02 16 13 C -0.61 -9.37 6.07 37.15 0.23 -9.15 16 14 C -0.11 -2.16 5.16 -26.74 -0.14 -2.30 16 15 C 0.03 0.77 4.97 -27.89 -0.14 0.63 16 16 C -0.53 -14.87 9.11 -34.44 -0.31 -15.19 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 20 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 24 C -0.11 -0.89 4.81 -26.74 -0.13 -1.01 16 25 C -0.14 -1.01 5.63 -26.73 -0.15 -1.16 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.23 7.87 -51.93 -0.41 -0.17 16 28 H 0.04 0.19 8.08 -51.93 -0.42 -0.23 16 29 H 0.06 0.34 7.79 -51.93 -0.40 -0.06 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.58 7.68 -51.93 -0.40 0.18 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.79 7.69 -51.93 -0.40 0.39 16 38 H 0.07 0.56 6.56 -51.93 -0.34 0.22 16 39 H 0.41 3.67 8.62 -34.47 -0.30 3.37 16 40 H 0.13 1.71 8.14 -51.92 -0.42 1.29 16 41 H 0.13 1.78 8.14 -51.92 -0.42 1.36 16 42 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.07 0.62 7.68 -51.93 -0.40 0.22 16 48 H 0.07 0.52 6.56 -51.93 -0.34 0.18 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.06 0.46 7.87 -51.93 -0.41 0.05 16 LS Contribution 405.09 15.07 6.10 6.10 Total: -1.00 -35.31 405.09 -10.83 -46.15 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -9.28 Total: -1.48 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: -0.36 Total: -27.45 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.67 Total: -37.99 kcal Atomic # 8 Polarization: -37.25 SS G_CDS: -2.36 Total: -39.62 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 38.23 SS G_CDS: -0.59 Total: 37.65 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.31 -10.83 -46.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352066874.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.132 kcal (2) G-P(sol) polarization free energy of solvation -35.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds