Wall clock time and date at job start Tue Mar 31 2020 17:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42902 * 113.99669 * 2 1 4 4 C 1.52996 * 109.46840 * 209.99927 * 3 2 1 5 5 C 1.53006 * 109.46947 * 299.99672 * 4 3 2 6 6 C 1.52997 * 109.47019 * 300.00109 * 5 4 3 7 7 C 1.53006 * 109.46646 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.46626 * 174.99857 * 7 6 5 9 9 N 1.46506 * 109.46691 * 179.97438 * 8 7 6 10 10 S 1.65602 * 119.99884 * 165.00184 * 9 8 7 11 11 O 1.42097 * 104.27810 * 181.07556 * 10 9 8 12 12 O 1.42106 * 104.27914 * 308.93327 * 10 9 8 13 13 C 1.81400 * 104.45158 * 65.00067 * 10 9 8 14 14 C 1.52989 * 109.47661 * 180.02562 * 13 10 9 15 15 C 1.52996 * 109.47818 * 180.02562 * 14 13 10 16 16 C 1.50696 * 109.47594 * 179.97438 * 15 14 13 17 17 H 1.07994 * 119.99755 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99976 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99786 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99773 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47434 * 89.99979 * 20 18 16 22 22 H 1.48504 * 109.46827 * 209.99619 * 20 18 16 23 23 H 1.48498 * 109.47139 * 329.99589 * 20 18 16 24 24 C 1.52996 * 109.47350 * 60.00137 * 6 5 4 25 25 C 1.52996 * 109.46951 * 299.99902 * 24 6 5 26 26 H 1.09002 * 109.46302 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47049 * 299.99821 * 1 2 3 28 28 H 1.08998 * 109.46963 * 60.00293 * 1 2 3 29 29 H 1.09002 * 109.47178 * 329.99809 * 3 2 1 30 30 H 1.09006 * 109.46822 * 180.02562 * 4 3 2 31 31 H 1.08997 * 109.47474 * 59.99996 * 4 3 2 32 32 H 1.09004 * 109.46482 * 180.02562 * 5 4 3 33 33 H 1.08990 * 109.46745 * 60.00426 * 5 4 3 34 34 H 1.09000 * 109.47175 * 299.99937 * 6 5 4 35 35 H 1.08993 * 109.46955 * 295.00330 * 7 6 5 36 36 H 1.09000 * 109.47050 * 55.00158 * 7 6 5 37 37 H 1.08993 * 109.47839 * 299.99931 * 8 7 6 38 38 H 1.09000 * 109.47160 * 60.00369 * 8 7 6 39 39 H 0.96995 * 120.00546 * 345.00667 * 9 8 7 40 40 H 1.09002 * 109.47071 * 300.00406 * 13 10 9 41 41 H 1.09002 * 109.46859 * 59.99902 * 13 10 9 42 42 H 1.09002 * 109.47182 * 300.00305 * 14 13 10 43 43 H 1.09002 * 109.47091 * 60.00011 * 14 13 10 44 44 H 1.09002 * 109.46871 * 300.00346 * 15 14 13 45 45 H 1.09002 * 109.46903 * 59.99746 * 15 14 13 46 46 H 0.97008 * 119.99662 * 180.02562 * 19 18 16 47 47 H 1.09006 * 109.46822 * 59.99467 * 24 6 5 48 48 H 1.08997 * 109.47474 * 179.97438 * 24 6 5 49 49 H 1.08993 * 109.47243 * 299.99585 * 25 24 6 50 50 H 1.09007 * 109.46984 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3589 1.2633 -0.7212 5 6 4.2927 0.2893 0.0002 6 6 4.5001 0.7554 1.4426 7 6 5.4334 -0.2190 2.1641 8 6 5.7404 0.3122 3.5657 9 7 6.6336 -0.6211 4.2567 10 16 7.4289 -0.1438 5.6287 11 8 8.2045 -1.2763 5.9960 12 8 8.0488 1.0823 5.2659 13 6 6.1094 0.1441 6.8398 14 6 6.7240 0.5959 8.1659 15 6 5.6113 0.8382 9.1876 16 6 6.2167 1.2826 10.4941 17 1 7.2881 1.3827 10.5863 18 6 5.4029 1.5615 11.5716 19 7 4.0983 1.4400 11.4591 20 14 6.1534 2.1131 13.1908 21 1 6.2627 3.5939 13.2069 22 1 5.2894 1.6683 14.3138 23 1 7.5047 1.5154 13.3391 24 6 3.1514 0.7976 2.1638 25 6 2.2177 1.7715 1.4425 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.3450 1.9994 -0.5139 30 1 3.8024 2.2591 -0.7208 31 1 3.2112 0.9314 -1.7489 32 1 5.2537 0.2597 -0.5135 33 1 3.8494 -0.7063 0.0001 34 1 4.9434 1.7512 1.4425 35 1 4.9513 -1.1934 2.2423 36 1 6.3617 -0.3170 1.6013 37 1 6.2225 1.2866 3.4875 38 1 4.8121 0.4103 4.1285 39 1 6.7593 -1.5184 3.9107 40 1 5.4380 0.9183 6.4684 41 1 5.5500 -0.7786 6.9938 42 1 7.3957 -0.1780 8.5375 43 1 7.2832 1.5188 8.0116 44 1 4.9393 1.6119 8.8163 45 1 5.0525 -0.0849 9.3419 46 1 3.5257 1.6365 12.2171 47 1 2.7081 -0.1983 2.1638 48 1 3.2992 1.1291 3.1916 49 1 2.6609 2.7672 1.4425 50 1 1.2566 1.8012 1.9561 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352066874.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:58 Heat of formation + Delta-G solvation = -188.367949 kcal Electronic energy + Delta-G solvation = -26880.353933 eV Core-core repulsion = 23032.027725 eV Total energy + Delta-G solvation = -3848.326208 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.181 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.44348 -38.24452 -37.91399 -37.03870 -36.46219 -36.09578 -34.16193 -32.62408 -31.64849 -29.65113 -28.48544 -27.19517 -25.62003 -24.44121 -23.32675 -22.44444 -21.74589 -20.58550 -20.19670 -18.67596 -18.42292 -17.51022 -17.22993 -17.09825 -16.87459 -16.48350 -16.27110 -16.22527 -15.65988 -15.51377 -15.03746 -14.61174 -14.49069 -14.41228 -14.07722 -13.66526 -13.53456 -13.46298 -13.43620 -13.19541 -13.11948 -13.02951 -12.96885 -12.75682 -12.67690 -12.62262 -12.38196 -12.19797 -12.10981 -11.94551 -11.92777 -11.74346 -11.37749 -11.30396 -11.16495 -11.08333 -10.86738 -10.57739 -10.37735 -10.18653 -8.23024 -6.33897 -0.70790 1.40013 1.40746 1.52185 1.82459 2.39638 2.77773 2.95596 3.10531 3.25523 3.73671 3.76395 3.84632 3.85356 3.95717 4.07418 4.19682 4.25844 4.39181 4.41519 4.44532 4.52929 4.55311 4.62007 4.66701 4.68229 4.69801 4.73764 4.79999 4.88004 4.96676 5.00034 5.02724 5.07367 5.12166 5.19346 5.27758 5.34683 5.37613 5.41217 5.45392 5.51754 5.63019 5.69459 5.79350 6.15458 6.19697 6.37652 6.81789 7.35373 8.88494 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013013 B = 0.002281 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.229109 B =12272.232668 C =13900.656019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.085 3.915 4 C -0.115 4.115 5 C -0.106 4.106 6 C -0.083 4.083 7 C -0.114 4.114 8 C 0.101 3.899 9 N -1.109 6.109 10 S 2.633 3.367 11 O -0.994 6.994 12 O -0.991 6.991 13 C -0.610 4.610 14 C -0.107 4.107 15 C 0.031 3.969 16 C -0.552 4.552 17 H 0.060 0.940 18 C 0.002 3.998 19 N -0.930 5.930 20 Si 0.963 3.037 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.265 1.265 24 C -0.115 4.115 25 C -0.143 4.143 26 H 0.089 0.911 27 H 0.041 0.959 28 H 0.048 0.952 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.425 0.575 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.004 0.996 45 H 0.002 0.998 46 H 0.265 0.735 47 H 0.060 0.940 48 H 0.064 0.936 49 H 0.079 0.921 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.775 -1.934 -28.205 28.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C 0.027 3.973 4 C -0.153 4.153 5 C -0.143 4.143 6 C -0.102 4.102 7 C -0.153 4.153 8 C -0.025 4.025 9 N -0.871 5.871 10 S 2.728 3.272 11 O -0.985 6.985 12 O -0.981 6.981 13 C -0.741 4.741 14 C -0.146 4.146 15 C -0.008 4.008 16 C -0.590 4.590 17 H 0.078 0.922 18 C -0.196 4.196 19 N -0.570 5.570 20 Si 0.787 3.213 21 H -0.197 1.197 22 H -0.205 1.205 23 H -0.189 1.189 24 C -0.152 4.152 25 C -0.180 4.180 26 H 0.108 0.892 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.262 0.738 40 H 0.163 0.837 41 H 0.163 0.837 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.022 0.978 45 H 0.020 0.980 46 H 0.074 0.926 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.098 0.902 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.894 -1.813 -27.982 28.464 hybrid contribution -0.898 0.092 1.150 1.462 sum -5.792 -1.721 -26.832 27.504 Atomic orbital electron populations 1.22883 0.80632 1.03249 1.00311 1.87902 1.20249 1.28571 1.95125 1.22228 0.95200 0.84318 0.95535 1.21655 0.93724 1.00893 0.98998 1.21431 0.99204 0.99266 0.94443 1.21121 0.94838 0.99353 0.94887 1.21760 1.00322 0.99821 0.93401 1.21666 0.93327 0.92561 0.94901 1.55292 1.63749 1.25185 1.42916 1.04096 0.75503 0.72964 0.74653 1.93530 1.68584 1.52329 1.84027 1.93527 1.74253 1.48341 1.81958 1.30503 1.18813 1.12638 1.12121 1.21309 0.99516 1.01034 0.92726 1.18963 0.93426 0.95686 0.92678 1.21746 0.93821 1.45720 0.97735 0.92176 1.25939 0.95291 0.95469 1.02898 1.70071 1.04365 1.49956 1.32594 0.85475 0.78569 0.78780 0.78429 1.19659 1.20545 1.18946 1.21562 0.94917 0.99910 0.98820 1.22036 1.00052 0.99865 0.96085 0.89232 0.93998 0.93304 0.91605 0.89632 0.91336 0.91371 0.92246 0.90462 0.90562 0.90615 0.90612 0.90365 0.73835 0.83730 0.83690 0.91643 0.91469 0.97806 0.97959 0.92632 0.92161 0.91757 0.90221 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.82 113.37 1.23 1.52 16 2 O -0.40 -6.29 9.00 -148.98 -1.34 -7.63 16 3 C 0.08 1.07 2.92 30.59 0.09 1.16 16 4 C -0.12 -1.29 5.66 30.60 0.17 -1.12 16 5 C -0.11 -1.31 5.06 30.60 0.15 -1.15 16 6 C -0.08 -1.06 2.19 -10.79 -0.02 -1.09 16 7 C -0.11 -1.53 4.82 30.60 0.15 -1.38 16 8 C 0.10 1.70 5.89 86.38 0.51 2.21 16 9 N -1.11 -21.62 5.89 -187.49 -1.10 -22.72 16 10 S 2.63 74.21 5.46 -56.49 -0.31 73.90 16 11 O -0.99 -34.25 18.08 -127.65 -2.31 -36.56 16 12 O -0.99 -33.94 17.50 -127.65 -2.23 -36.18 16 13 C -0.61 -18.15 6.07 71.98 0.44 -17.71 16 14 C -0.11 -4.34 5.16 30.59 0.16 -4.19 16 15 C 0.03 1.59 4.97 29.85 0.15 1.74 16 16 C -0.55 -31.54 9.11 25.60 0.23 -31.31 16 17 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 18 C 0.00 0.13 5.46 84.66 0.46 0.59 16 19 N -0.93 -55.86 13.29 21.45 0.28 -55.57 16 20 Si 0.96 44.31 29.54 68.60 2.03 46.33 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 24 C -0.11 -1.65 4.81 30.59 0.15 -1.50 16 25 C -0.14 -1.87 5.63 30.59 0.17 -1.69 16 26 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.04 0.45 7.87 -2.39 -0.02 0.43 16 28 H 0.05 0.44 8.08 -2.39 -0.02 0.42 16 29 H 0.07 0.70 7.79 -2.39 -0.02 0.68 16 30 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.89 7.68 -2.39 -0.02 0.87 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 1.37 7.69 -2.39 -0.02 1.35 16 38 H 0.08 1.16 6.56 -2.39 -0.02 1.14 16 39 H 0.43 6.64 8.62 -96.75 -0.83 5.81 16 40 H 0.14 3.73 8.14 -2.39 -0.02 3.71 16 41 H 0.14 3.83 8.14 -2.39 -0.02 3.81 16 42 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 43 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 44 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 45 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 46 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 47 H 0.06 1.00 7.68 -2.38 -0.02 0.99 16 48 H 0.06 0.93 6.56 -2.39 -0.02 0.92 16 49 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.06 0.81 7.87 -2.38 -0.02 0.79 16 Total: -1.00 -75.05 405.09 -0.89 -75.93 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.06 Total: 16.43 kcal Atomic # 6 Polarization: -57.97 SS G_CDS: 4.03 Total: -53.93 kcal Atomic # 7 Polarization: -77.47 SS G_CDS: -0.82 Total: -78.29 kcal Atomic # 8 Polarization: -74.49 SS G_CDS: -5.88 Total: -80.37 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 74.21 SS G_CDS: -0.31 Total: 73.90 kcal Total: -75.05 -0.89 -75.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352066874.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.433 kcal (2) G-P(sol) polarization free energy of solvation -75.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds