Wall clock time and date at job start Tue Mar 31 2020 17:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99897 * 2 1 4 4 C 1.52996 * 109.47006 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.88445 * 300.70558 * 4 3 2 6 6 N 1.46504 * 109.46712 * 64.57876 * 5 4 3 7 7 C 1.34779 * 119.99718 * 180.02562 * 6 5 4 8 8 O 1.21585 * 120.00009 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99796 * 179.72177 * 7 6 5 10 10 C 1.39238 * 119.99916 * 176.96622 * 9 7 6 11 11 C 1.39480 * 119.83879 * 217.51435 * 10 9 7 12 12 C 1.36369 * 120.17465 * 179.76003 * 11 10 9 13 13 C 1.40870 * 119.82608 * 0.51616 * 12 11 10 14 14 C 1.41155 * 120.16458 * 179.71655 * 13 12 11 15 15 H 1.07999 * 119.99978 * 157.95083 * 14 13 12 16 16 C 1.39887 * 120.00090 * 337.94941 * 14 13 12 17 17 N 1.30880 * 119.99999 * 327.61425 * 16 14 13 18 18 Si 1.86807 * 120.00257 * 147.61679 * 16 14 13 19 19 H 1.48500 * 109.47125 * 94.98336 * 18 16 14 20 20 H 1.48496 * 109.46937 * 214.98874 * 18 16 14 21 21 H 1.48503 * 109.46695 * 334.98782 * 18 16 14 22 22 C 1.40872 * 119.67329 * 359.73989 * 13 12 11 23 23 C 1.36380 * 119.82523 * 0.02562 * 22 13 12 24 24 C 1.54322 * 110.02490 * 179.58856 * 4 3 2 25 25 C 1.55138 * 103.02234 * 218.23958 * 24 4 3 26 26 C 1.54911 * 101.65174 * 35.64969 * 25 24 4 27 27 N 1.47444 * 109.88600 * 61.74074 * 4 3 2 28 28 H 1.09006 * 109.47180 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47188 * 299.99076 * 1 2 3 30 30 H 1.09000 * 109.47551 * 59.99038 * 1 2 3 31 31 H 1.09005 * 109.46529 * 60.00934 * 3 2 1 32 32 H 1.08995 * 109.47922 * 300.00614 * 3 2 1 33 33 H 1.08997 * 109.47039 * 304.58187 * 5 4 3 34 34 H 1.08999 * 109.47428 * 184.57647 * 5 4 3 35 35 H 0.97000 * 120.00077 * 359.97438 * 6 5 4 36 36 H 0.96994 * 120.00140 * 356.96881 * 9 7 6 37 37 H 1.08008 * 119.90991 * 0.02562 * 11 10 9 38 38 H 1.07999 * 120.09035 * 180.25452 * 12 11 10 39 39 H 0.97002 * 119.99973 * 180.02562 * 17 16 14 40 40 H 1.07997 * 120.08635 * 179.97438 * 22 13 12 41 41 H 1.08000 * 119.91471 * 179.97438 * 23 22 13 42 42 H 1.09010 * 110.70125 * 336.62041 * 24 4 3 43 43 H 1.08993 * 110.70888 * 99.85483 * 24 4 3 44 44 H 1.09003 * 110.99301 * 277.56226 * 25 24 4 45 45 H 1.08996 * 111.02713 * 153.75265 * 25 24 4 46 46 H 1.08998 * 110.37345 * 204.10425 * 26 25 24 47 47 H 1.09001 * 110.46598 * 81.81382 * 26 25 24 48 48 H 1.00900 * 111.00289 * 356.30860 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9966 0.4110 1.2361 6 7 3.4950 -0.9638 1.1672 7 6 3.7783 -1.8348 2.1559 8 8 4.4506 -1.4798 3.1047 9 7 3.3121 -3.0979 2.0953 10 6 3.6569 -4.0154 3.0842 11 6 3.8997 -5.3457 2.7424 12 6 4.2426 -6.2491 3.7047 13 6 4.3407 -5.8380 5.0485 14 6 4.6892 -6.7684 6.0512 15 1 5.1075 -6.4240 6.9855 16 6 4.4929 -8.1364 5.8348 17 7 3.4921 -8.5452 5.0971 18 14 5.6590 -9.3798 6.5988 19 1 5.0945 -9.8630 7.8845 20 1 5.8349 -10.5274 5.6729 21 1 6.9748 -8.7373 6.8462 22 6 4.0887 -4.4939 5.3868 23 6 3.7515 -3.6010 4.4127 24 6 4.1766 2.5883 -0.0111 25 6 5.4008 2.4064 -0.9465 26 6 4.8483 1.4080 -1.9942 27 7 3.9830 0.4909 -1.2222 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5140 -0.8899 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8465 -0.8898 33 1 3.6091 0.8946 2.1327 34 1 5.0860 0.3988 1.2718 35 1 2.9583 -1.2469 0.4104 36 1 2.7365 -3.3678 1.3628 37 1 3.8201 -5.6602 1.7122 38 1 4.4343 -7.2779 3.4380 39 1 3.3557 -9.4938 4.9474 40 1 4.1616 -4.1716 6.4150 41 1 3.5576 -2.5703 4.6705 42 1 3.4850 3.3249 -0.4202 43 1 4.4965 2.8734 0.9911 44 1 6.2450 1.9780 -0.4062 45 1 5.6784 3.3504 -1.4154 46 1 5.6649 0.8567 -2.4605 47 1 4.2653 1.9331 -2.7508 48 1 3.1953 0.1864 -1.7744 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414760578.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:37 Heat of formation + Delta-G solvation = -44.537481 kcal Electronic energy + Delta-G solvation = -28691.696410 eV Core-core repulsion = 24746.455959 eV Total energy + Delta-G solvation = -3945.240451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.28903 -39.22629 -37.51202 -37.18169 -34.44484 -33.86159 -32.82531 -31.07210 -30.61006 -29.40420 -28.77244 -27.30600 -25.89020 -24.90005 -24.25965 -21.65533 -21.39569 -20.61733 -20.03074 -19.65657 -17.76526 -17.16840 -16.93623 -16.70691 -16.51635 -16.08779 -15.51534 -15.10997 -14.89699 -14.61585 -14.46370 -13.86928 -13.70173 -13.52626 -13.39087 -13.08672 -12.90841 -12.57546 -12.41575 -12.26683 -11.95577 -11.92016 -11.86131 -11.59052 -11.49445 -11.39611 -11.20323 -11.05494 -10.97872 -10.83110 -10.40465 -10.06199 -10.01871 -9.56584 -9.36418 -8.97514 -8.73314 -8.55544 -8.40825 -7.38928 -6.97097 -6.72450 -4.12747 2.80395 3.07843 3.12135 3.14951 3.23421 3.30350 3.54734 3.90293 3.98793 4.01546 4.21165 4.33104 4.53890 4.63236 4.65678 4.76654 4.92617 5.01338 5.03812 5.07082 5.11675 5.20865 5.38265 5.42261 5.45052 5.51648 5.67742 5.78171 5.79472 5.83151 5.99370 6.34609 6.51350 6.59371 6.77172 6.94656 7.05500 7.07948 7.11419 7.15085 7.29357 7.46909 7.58901 7.75263 8.08403 8.16706 8.20048 8.41565 8.70113 8.83763 8.98167 9.08409 9.44135 10.15285 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023257 B = 0.002267 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.640440 B =12346.166429 C =12758.036435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.381 6.381 3 C 0.052 3.948 4 C 0.096 3.904 5 C 0.172 3.828 6 N -0.728 5.728 7 C 0.694 3.306 8 O -0.592 6.592 9 N -0.669 5.669 10 C 0.008 3.992 11 C -0.107 4.107 12 C -0.170 4.170 13 C 0.110 3.890 14 C -0.469 4.469 15 H 0.080 0.920 16 C 0.089 3.911 17 N -0.774 5.774 18 Si 0.893 3.107 19 H -0.271 1.271 20 H -0.275 1.275 21 H -0.258 1.258 22 C -0.222 4.222 23 C -0.068 4.068 24 C -0.129 4.129 25 C -0.129 4.129 26 C 0.045 3.955 27 N -0.666 5.666 28 H 0.090 0.910 29 H 0.042 0.958 30 H 0.038 0.962 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.402 0.598 36 H 0.389 0.611 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.281 0.719 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.040 0.960 48 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.587 19.233 -15.879 25.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.300 6.300 3 C -0.026 4.026 4 C 0.005 3.995 5 C 0.046 3.954 6 N -0.387 5.387 7 C 0.394 3.606 8 O -0.471 6.471 9 N -0.314 5.314 10 C -0.084 4.084 11 C -0.128 4.128 12 C -0.190 4.190 13 C 0.107 3.893 14 C -0.498 4.498 15 H 0.098 0.902 16 C -0.132 4.132 17 N -0.398 5.398 18 Si 0.717 3.283 19 H -0.196 1.196 20 H -0.200 1.200 21 H -0.182 1.182 22 C -0.242 4.242 23 C -0.088 4.088 24 C -0.168 4.168 25 C -0.167 4.167 26 C -0.084 4.084 27 N -0.297 5.297 28 H 0.108 0.892 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.239 0.761 36 H 0.222 0.778 37 H 0.106 0.894 38 H 0.124 0.876 39 H 0.092 0.908 40 H 0.111 0.889 41 H 0.121 0.879 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.058 0.942 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.472 18.839 -14.819 24.219 hybrid contribution -1.054 -0.058 -0.856 1.359 sum -4.526 18.781 -15.675 24.878 Atomic orbital electron populations 1.22769 0.80615 1.03226 0.99768 1.87759 1.19886 1.27012 1.95310 1.23093 0.93370 0.85531 1.00615 1.21981 0.91277 0.93432 0.92837 1.20915 0.98844 0.81475 0.94182 1.44874 1.58380 1.10681 1.24775 1.16054 0.80331 0.81109 0.83062 1.90875 1.44349 1.77653 1.34211 1.42024 1.52107 1.09256 1.28051 1.16884 1.16017 0.88311 0.87210 1.20167 1.02550 0.92490 0.97568 1.20592 1.07679 0.98250 0.92463 1.17570 0.87830 0.91525 0.92366 1.19449 1.37647 0.90384 1.02284 0.90204 1.25898 0.93709 0.99836 0.93755 1.69963 1.22121 1.17517 1.30149 0.86559 0.82483 0.79736 0.79536 1.19601 1.20000 1.18177 1.20600 1.11969 0.94551 0.97115 1.20337 0.99154 0.98163 0.91185 1.22744 0.97505 0.94802 1.01756 1.22706 0.97954 0.99223 0.96800 1.22861 0.96940 0.93309 0.95243 1.61746 1.23192 1.38141 1.06599 0.89198 0.93960 0.94306 0.92309 0.93365 0.92421 0.91813 0.76083 0.77837 0.89405 0.87595 0.90820 0.88924 0.87910 0.90849 0.89690 0.90146 0.90624 0.90125 0.94165 0.83692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -3.47 7.26 -35.23 -0.26 -3.73 16 3 C 0.05 0.40 4.56 37.16 0.17 0.57 16 4 C 0.10 0.84 0.81 -130.61 -0.11 0.74 16 5 C 0.17 2.22 4.63 -4.04 -0.02 2.20 16 6 N -0.73 -10.87 4.73 -65.22 -0.31 -11.18 16 7 C 0.69 13.81 8.37 -86.92 -0.73 13.08 16 8 O -0.59 -14.24 13.96 5.29 0.07 -14.17 16 9 N -0.67 -13.24 5.30 -14.10 -0.07 -13.31 16 10 C 0.01 0.20 6.25 -83.57 -0.52 -0.32 16 11 C -0.11 -2.61 9.90 -39.79 -0.39 -3.00 16 12 C -0.17 -4.55 8.74 -39.26 -0.34 -4.90 16 13 C 0.11 3.07 5.57 -106.80 -0.60 2.48 16 14 C -0.47 -12.92 8.94 -37.86 -0.34 -13.26 16 15 H 0.08 2.13 8.02 -52.49 -0.42 1.71 16 16 C 0.09 2.28 4.77 -17.34 -0.08 2.20 16 17 N -0.77 -20.24 11.78 55.54 0.65 -19.59 16 18 Si 0.89 18.90 29.66 -169.99 -5.04 13.86 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 21 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 22 C -0.22 -5.98 9.74 -39.26 -0.38 -6.36 16 23 C -0.07 -1.76 8.59 -39.79 -0.34 -2.10 16 24 C -0.13 -0.87 6.01 -24.91 -0.15 -1.02 16 25 C -0.13 -0.86 7.08 -24.59 -0.17 -1.03 16 26 C 0.05 0.32 7.57 -2.30 -0.02 0.30 16 27 N -0.67 -5.87 6.50 -97.13 -0.63 -6.50 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.40 5.32 6.00 -40.82 -0.25 5.07 16 36 H 0.39 6.37 8.84 -40.82 -0.36 6.01 16 37 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 38 H 0.11 2.86 6.53 -52.49 -0.34 2.52 16 39 H 0.28 6.61 8.30 -40.82 -0.34 6.27 16 40 H 0.09 2.37 8.06 -52.49 -0.42 1.95 16 41 H 0.10 2.65 6.45 -52.49 -0.34 2.31 16 42 H 0.07 0.39 7.86 -51.92 -0.41 -0.02 16 43 H 0.08 0.57 7.83 -51.93 -0.41 0.17 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 48 H 0.35 2.81 7.91 -39.29 -0.31 2.50 16 LS Contribution 386.47 15.07 5.82 5.82 Total: -1.00 -32.57 386.47 -10.13 -42.70 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -7.46 Total: 15.16 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -2.91 Total: -9.07 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.36 Total: -50.58 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.18 Total: -17.90 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.04 Total: 13.86 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.57 -10.13 -42.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414760578.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.835 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds