Wall clock time and date at job start Tue Mar 31 2020 17:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34773 * 120.00293 * 2 1 4 4 O 1.21289 * 120.00017 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.00043 * 359.97438 * 3 2 1 6 6 H 1.08997 * 109.46841 * 40.00119 * 5 3 2 7 7 N 1.46898 * 109.46992 * 160.00293 * 5 3 2 8 8 C 1.52998 * 109.46882 * 280.00460 * 5 3 2 9 9 C 1.53000 * 109.47289 * 175.00198 * 8 5 3 10 10 C 1.50696 * 109.47553 * 179.97438 * 9 8 5 11 11 H 1.07997 * 119.99727 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99839 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00297 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99719 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46784 * 90.00159 * 14 12 10 16 16 H 1.48496 * 109.47163 * 210.00209 * 14 12 10 17 17 H 1.48501 * 109.47298 * 330.00645 * 14 12 10 18 18 C 1.46504 * 119.99610 * 179.97438 * 2 1 3 19 19 H 1.09007 * 109.47013 * 185.57454 * 18 2 1 20 20 C 1.52998 * 109.47547 * 305.57395 * 18 2 1 21 21 C 1.50705 * 109.47140 * 295.00580 * 20 18 2 22 22 N 1.34777 * 119.99565 * 179.97438 * 21 20 18 23 23 O 1.21282 * 120.00075 * 359.97438 * 21 20 18 24 24 C 1.50702 * 109.47190 * 65.57775 * 18 2 1 25 25 C 1.38233 * 119.99773 * 30.15693 * 24 18 2 26 26 C 1.38237 * 120.00080 * 180.02562 * 25 24 18 27 27 C 1.38243 * 119.99486 * 359.95336 * 26 25 24 28 28 C 1.38234 * 120.00043 * 359.97438 * 27 26 25 29 29 C 1.38227 * 120.00170 * 0.07219 * 28 27 26 30 30 H 1.08996 * 109.47176 * 275.14389 * 1 2 3 31 31 H 1.09002 * 109.46737 * 35.14034 * 1 2 3 32 32 H 1.08994 * 109.47293 * 155.14053 * 1 2 3 33 33 H 1.00899 * 111.00270 * 59.99946 * 7 5 3 34 34 H 1.00899 * 110.99487 * 183.95600 * 7 5 3 35 35 H 1.09011 * 109.46758 * 294.99545 * 8 5 3 36 36 H 1.08994 * 109.47724 * 54.99485 * 8 5 3 37 37 H 1.09006 * 109.46520 * 299.99821 * 9 8 5 38 38 H 1.09000 * 109.46926 * 59.99023 * 9 8 5 39 39 H 0.96999 * 119.99790 * 180.02562 * 13 12 10 40 40 H 1.09002 * 109.46839 * 55.00103 * 20 18 2 41 41 H 1.08996 * 109.47387 * 174.99863 * 20 18 2 42 42 H 0.96999 * 120.00333 * 0.02562 * 22 21 20 43 43 H 0.96998 * 119.99731 * 179.97438 * 22 21 20 44 44 H 1.07997 * 120.00331 * 359.97438 * 25 24 18 45 45 H 1.07998 * 120.00514 * 179.97438 * 26 25 24 46 46 H 1.08005 * 119.99586 * 179.72316 * 27 26 25 47 47 H 1.08003 * 119.99570 * 179.97438 * 28 27 26 48 48 H 1.07998 * 120.00217 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4723 -0.0006 6 1 0.5218 2.3935 0.6597 7 7 2.2676 3.5471 0.4731 8 6 0.9140 2.7883 -1.4214 9 6 0.0442 4.0469 -1.4021 10 6 -0.4196 4.3586 -2.8016 11 1 -0.1233 3.7228 -3.6228 12 6 -1.2223 5.4553 -3.0336 13 7 -1.5827 6.2297 -2.0337 14 14 -1.7967 5.8421 -4.7685 15 1 -3.0870 5.1540 -5.0276 16 1 -1.9797 7.3085 -4.9141 17 1 -0.7801 5.3709 -5.7431 18 6 2.1974 -1.2688 0.0006 19 1 3.2649 -1.0721 0.1003 20 6 1.7257 -2.1296 1.1742 21 6 2.0939 -1.4560 2.4711 22 7 1.7755 -2.0356 3.6455 23 8 2.6767 -0.3925 2.4580 24 6 1.9398 -1.9982 -1.2928 25 6 1.6844 -1.2852 -2.4493 26 6 1.4476 -1.9542 -3.6356 27 6 1.4671 -3.3361 -3.6655 28 6 1.7239 -4.0490 -2.5093 29 6 1.9598 -3.3800 -1.3229 30 1 -0.3633 0.0921 1.0235 31 1 -0.3633 0.8404 -0.5915 32 1 -0.3633 -0.9324 -0.4320 33 1 3.0764 3.6402 -0.1229 34 1 1.7676 4.4207 0.5433 35 1 1.7796 2.9548 -2.0628 36 1 0.3325 1.9506 -1.8061 37 1 -0.8213 3.8805 -0.7607 38 1 0.6258 4.8846 -1.0173 39 1 -2.1477 7.0011 -2.1969 40 1 0.6438 -2.2523 1.1229 41 1 2.2050 -3.1072 1.1235 42 1 1.3097 -2.8864 3.6560 43 1 2.0128 -1.6023 4.4802 44 1 1.6691 -0.2056 -2.4258 45 1 1.2477 -1.3973 -4.5390 46 1 1.2776 -3.8589 -4.5914 47 1 1.7387 -5.1286 -2.5327 48 1 2.1600 -3.9369 -0.4195 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424169482.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:27 Heat of formation + Delta-G solvation = -50.074844 kcal Electronic energy + Delta-G solvation = -29715.151627 eV Core-core repulsion = 25769.671058 eV Total energy + Delta-G solvation = -3945.480569 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.68488 -39.10296 -38.91092 -35.91119 -35.29989 -33.78260 -32.88553 -32.47379 -30.96264 -29.84164 -29.65433 -26.92776 -26.61221 -24.80824 -23.39896 -22.62740 -21.34082 -20.57635 -19.93411 -18.81874 -17.71349 -17.38055 -17.27338 -16.45730 -16.26765 -15.90909 -15.35817 -15.16446 -14.76977 -14.60126 -14.45160 -14.25522 -13.91116 -13.76220 -13.45513 -13.42353 -13.02403 -12.87265 -12.73757 -12.45739 -12.33110 -12.07102 -12.05416 -11.70724 -11.59610 -11.12790 -11.06928 -10.97668 -10.86607 -10.65773 -9.99850 -9.91638 -9.80607 -9.79486 -9.22767 -9.08632 -9.00764 -8.78005 -8.47146 -8.41341 -8.02487 -6.06212 -4.09237 1.21414 1.31424 2.58120 3.12002 3.20363 3.27886 3.32772 3.34909 3.38209 3.72005 4.40773 4.47025 4.51477 4.77187 4.86858 4.89178 5.01689 5.03882 5.11779 5.22981 5.24748 5.29535 5.34480 5.41997 5.52719 5.59575 5.71071 5.80076 5.85510 5.86635 5.92975 5.94719 6.31945 6.35559 6.42400 6.47635 6.58223 6.63146 6.77908 6.89611 6.93046 7.15779 7.51708 7.56677 7.65581 7.78949 7.91162 8.04300 8.19060 8.33984 8.67962 8.96774 9.55488 11.04672 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010837 B = 0.003678 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.087672 B = 7610.830308 C = 9463.715589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.607 5.607 3 C 0.539 3.461 4 O -0.525 6.525 5 C 0.078 3.922 6 H 0.093 0.907 7 N -0.828 5.828 8 C -0.140 4.140 9 C 0.025 3.975 10 C -0.522 4.522 11 H 0.054 0.946 12 C 0.059 3.941 13 N -0.893 5.893 14 Si 0.891 3.109 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 C 0.198 3.802 19 H 0.119 0.881 20 C -0.153 4.153 21 C 0.508 3.492 22 N -0.863 5.863 23 O -0.510 6.510 24 C -0.094 4.094 25 C -0.095 4.095 26 C -0.115 4.115 27 C -0.123 4.123 28 C -0.122 4.122 29 C -0.120 4.120 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.344 0.656 34 H 0.352 0.648 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.261 0.739 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.397 0.603 43 H 0.400 0.600 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.071 -24.029 6.068 24.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.342 5.342 3 C 0.327 3.673 4 O -0.399 6.399 5 C -0.037 4.037 6 H 0.111 0.889 7 N -0.360 5.360 8 C -0.179 4.179 9 C -0.012 4.012 10 C -0.561 4.561 11 H 0.072 0.928 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.719 3.281 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.199 1.199 18 C 0.093 3.907 19 H 0.136 0.864 20 C -0.194 4.194 21 C 0.292 3.708 22 N -0.428 5.428 23 O -0.383 6.383 24 C -0.096 4.096 25 C -0.113 4.113 26 C -0.133 4.133 27 C -0.141 4.141 28 C -0.140 4.140 29 C -0.139 4.139 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.157 0.843 34 H 0.167 0.833 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.071 0.929 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.225 0.775 43 H 0.230 0.770 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.099 -23.550 6.572 24.791 hybrid contribution -1.029 0.329 -1.492 1.842 sum 3.070 -23.221 5.080 23.968 Atomic orbital electron populations 1.21912 0.79811 1.03839 1.01774 1.47613 1.06402 1.04811 1.75336 1.20679 0.87863 0.84833 0.73895 1.90603 1.14163 1.86880 1.48296 1.21451 0.95034 0.89428 0.97808 0.88941 1.58701 1.10810 1.09096 1.57402 1.22449 1.00569 1.01551 0.93372 1.19092 0.93985 0.90725 0.97398 1.21175 1.30655 1.10689 0.93534 0.92754 1.25003 0.96167 0.96158 0.96932 1.69950 1.36290 1.16188 1.30743 0.86607 0.79083 0.77508 0.84900 1.20641 1.21176 1.19891 1.19435 0.99442 0.82621 0.89161 0.86375 1.22150 1.04056 1.00460 0.92699 1.20589 0.78864 0.85647 0.85722 1.43901 1.63598 1.26733 1.08552 1.90919 1.39136 1.20997 1.87223 1.20181 1.00320 0.93679 0.95373 1.21090 0.97804 1.00595 0.91857 1.21230 0.99501 0.94486 0.98123 1.21166 1.00356 0.94321 0.98260 1.21072 1.00475 0.99623 0.92826 1.20997 1.01309 0.93335 0.98229 0.93083 0.89587 0.91209 0.84282 0.83338 0.92740 0.92434 0.96408 0.96405 0.92914 0.88218 0.87739 0.77507 0.76955 0.85747 0.85892 0.86282 0.86217 0.85988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.85 8.24 59.85 0.49 1.34 16 2 N -0.61 -8.70 1.17 -175.26 -0.20 -8.91 16 3 C 0.54 9.86 5.82 -10.99 -0.06 9.80 16 4 O -0.53 -11.30 15.45 5.55 0.09 -11.21 16 5 C 0.08 1.45 2.38 -68.87 -0.16 1.29 16 6 H 0.09 1.69 7.29 -51.93 -0.38 1.31 16 7 N -0.83 -15.84 8.94 -5.66 -0.05 -15.89 16 8 C -0.14 -2.82 4.48 -26.73 -0.12 -2.94 16 9 C 0.03 0.62 4.74 -27.88 -0.13 0.48 16 10 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 11 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 14 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 18 C 0.20 2.47 2.00 -69.08 -0.14 2.33 16 19 H 0.12 1.85 6.73 -51.92 -0.35 1.50 16 20 C -0.15 -1.32 4.53 -27.88 -0.13 -1.45 16 21 C 0.51 5.66 7.96 -10.98 -0.09 5.57 16 22 N -0.86 -5.87 8.87 31.22 0.28 -5.59 16 23 O -0.51 -8.68 15.27 5.56 0.08 -8.59 16 24 C -0.09 -1.07 4.87 -104.62 -0.51 -1.58 16 25 C -0.10 -1.22 8.99 -39.58 -0.36 -1.58 16 26 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 27 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 28 C -0.12 -1.06 10.05 -39.59 -0.40 -1.46 16 29 C -0.12 -1.08 9.14 -39.59 -0.36 -1.44 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 1.17 5.00 -51.93 -0.26 0.91 16 32 H 0.07 0.70 7.29 -51.93 -0.38 0.32 16 33 H 0.34 6.62 8.58 -39.29 -0.34 6.28 16 34 H 0.35 6.62 7.55 -39.29 -0.30 6.33 16 35 H 0.05 1.15 8.14 -51.92 -0.42 0.73 16 36 H 0.06 1.09 6.31 -51.93 -0.33 0.77 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.10 0.69 7.22 -51.93 -0.37 0.31 16 41 H 0.10 0.60 6.21 -51.93 -0.32 0.28 16 42 H 0.40 1.29 8.83 -40.82 -0.36 0.93 16 43 H 0.40 2.66 8.93 -40.82 -0.36 2.30 16 44 H 0.12 1.84 7.27 -52.49 -0.38 1.46 16 45 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 46 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 47 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 48 H 0.12 0.77 6.05 -52.49 -0.32 0.45 16 LS Contribution 386.48 15.07 5.82 5.82 Total: -1.00 -36.03 386.48 -8.32 -44.36 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -6.88 Total: 15.16 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -3.17 Total: -6.02 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.76 Total: -55.81 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: 0.17 Total: -19.81 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.03 -8.32 -44.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424169482.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.720 kcal (2) G-P(sol) polarization free energy of solvation -36.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds