Wall clock time and date at job start Tue Mar 31 2020 17:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34773 * 120.00293 * 2 1 4 4 O 1.21289 * 120.00017 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.00043 * 359.97438 * 3 2 1 6 6 H 1.08997 * 109.46841 * 40.00119 * 5 3 2 7 7 N 1.46898 * 109.46992 * 160.00293 * 5 3 2 8 8 C 1.52998 * 109.46882 * 280.00460 * 5 3 2 9 9 C 1.53000 * 109.47289 * 175.00198 * 8 5 3 10 10 C 1.50696 * 109.47553 * 179.97438 * 9 8 5 11 11 H 1.07997 * 119.99727 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99839 * 179.97438 * 10 9 8 13 13 N 1.31510 * 120.00297 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99719 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46784 * 90.00159 * 14 12 10 16 16 H 1.48496 * 109.47163 * 210.00209 * 14 12 10 17 17 H 1.48501 * 109.47298 * 330.00645 * 14 12 10 18 18 C 1.46504 * 119.99610 * 179.97438 * 2 1 3 19 19 H 1.09007 * 109.47013 * 185.57454 * 18 2 1 20 20 C 1.52998 * 109.47547 * 305.57395 * 18 2 1 21 21 C 1.50705 * 109.47140 * 295.00580 * 20 18 2 22 22 N 1.34777 * 119.99565 * 179.97438 * 21 20 18 23 23 O 1.21282 * 120.00075 * 359.97438 * 21 20 18 24 24 C 1.50702 * 109.47190 * 65.57775 * 18 2 1 25 25 C 1.38233 * 119.99773 * 30.15693 * 24 18 2 26 26 C 1.38237 * 120.00080 * 180.02562 * 25 24 18 27 27 C 1.38243 * 119.99486 * 359.95336 * 26 25 24 28 28 C 1.38234 * 120.00043 * 359.97438 * 27 26 25 29 29 C 1.38227 * 120.00170 * 0.07219 * 28 27 26 30 30 H 1.08996 * 109.47176 * 275.14389 * 1 2 3 31 31 H 1.09002 * 109.46737 * 35.14034 * 1 2 3 32 32 H 1.08994 * 109.47293 * 155.14053 * 1 2 3 33 33 H 1.00899 * 111.00270 * 59.99946 * 7 5 3 34 34 H 1.00899 * 110.99487 * 183.95600 * 7 5 3 35 35 H 1.09011 * 109.46758 * 294.99545 * 8 5 3 36 36 H 1.08994 * 109.47724 * 54.99485 * 8 5 3 37 37 H 1.09006 * 109.46520 * 299.99821 * 9 8 5 38 38 H 1.09000 * 109.46926 * 59.99023 * 9 8 5 39 39 H 0.96999 * 119.99790 * 180.02562 * 13 12 10 40 40 H 1.09002 * 109.46839 * 55.00103 * 20 18 2 41 41 H 1.08996 * 109.47387 * 174.99863 * 20 18 2 42 42 H 0.96999 * 120.00333 * 0.02562 * 22 21 20 43 43 H 0.96998 * 119.99731 * 179.97438 * 22 21 20 44 44 H 1.07997 * 120.00331 * 359.97438 * 25 24 18 45 45 H 1.07998 * 120.00514 * 179.97438 * 26 25 24 46 46 H 1.08005 * 119.99586 * 179.72316 * 27 26 25 47 47 H 1.08003 * 119.99570 * 179.97438 * 28 27 26 48 48 H 1.07998 * 120.00217 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4723 -0.0006 6 1 0.5218 2.3935 0.6597 7 7 2.2676 3.5471 0.4731 8 6 0.9140 2.7883 -1.4214 9 6 0.0442 4.0469 -1.4021 10 6 -0.4196 4.3586 -2.8016 11 1 -0.1233 3.7228 -3.6228 12 6 -1.2223 5.4553 -3.0336 13 7 -1.5827 6.2297 -2.0337 14 14 -1.7967 5.8421 -4.7685 15 1 -3.0870 5.1540 -5.0276 16 1 -1.9797 7.3085 -4.9141 17 1 -0.7801 5.3709 -5.7431 18 6 2.1974 -1.2688 0.0006 19 1 3.2649 -1.0721 0.1003 20 6 1.7257 -2.1296 1.1742 21 6 2.0939 -1.4560 2.4711 22 7 1.7755 -2.0356 3.6455 23 8 2.6767 -0.3925 2.4580 24 6 1.9398 -1.9982 -1.2928 25 6 1.6844 -1.2852 -2.4493 26 6 1.4476 -1.9542 -3.6356 27 6 1.4671 -3.3361 -3.6655 28 6 1.7239 -4.0490 -2.5093 29 6 1.9598 -3.3800 -1.3229 30 1 -0.3633 0.0921 1.0235 31 1 -0.3633 0.8404 -0.5915 32 1 -0.3633 -0.9324 -0.4320 33 1 3.0764 3.6402 -0.1229 34 1 1.7676 4.4207 0.5433 35 1 1.7796 2.9548 -2.0628 36 1 0.3325 1.9506 -1.8061 37 1 -0.8213 3.8805 -0.7607 38 1 0.6258 4.8846 -1.0173 39 1 -2.1477 7.0011 -2.1969 40 1 0.6438 -2.2523 1.1229 41 1 2.2050 -3.1072 1.1235 42 1 1.3097 -2.8864 3.6560 43 1 2.0128 -1.6023 4.4802 44 1 1.6691 -0.2056 -2.4258 45 1 1.2477 -1.3973 -4.5390 46 1 1.2776 -3.8589 -4.5914 47 1 1.7387 -5.1286 -2.5327 48 1 2.1600 -3.9369 -0.4195 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424169482.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:26 Heat of formation + Delta-G solvation = -77.157811 kcal Electronic energy + Delta-G solvation = -29716.326032 eV Core-core repulsion = 25769.671058 eV Total energy + Delta-G solvation = -3946.654975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.74889 -40.18716 -39.84555 -37.23376 -36.80045 -34.87531 -34.59009 -33.49348 -31.75243 -31.71136 -30.44180 -28.31702 -27.93961 -26.26578 -24.79112 -23.46453 -22.47622 -21.92272 -21.02448 -20.05214 -18.91170 -18.47301 -18.25244 -18.02538 -17.33562 -17.02710 -16.53136 -16.24842 -16.18199 -15.85254 -15.74046 -15.55241 -15.17443 -14.92746 -14.70298 -14.52818 -14.24849 -14.04574 -13.82351 -13.77415 -13.54080 -13.44444 -13.25837 -13.10548 -12.84081 -12.64188 -12.53787 -12.52583 -11.96063 -11.83148 -11.78716 -11.68334 -11.31424 -10.93147 -10.62247 -10.56119 -10.54382 -9.78588 -9.70815 -9.67394 -9.51279 -8.21826 -6.32676 0.42616 0.53488 1.38493 1.39705 1.50373 1.71022 1.79916 2.01403 2.39348 2.63363 2.92730 3.11552 3.52026 3.70451 3.73777 3.76554 4.06716 4.08381 4.16025 4.20790 4.21621 4.26904 4.31216 4.41652 4.52844 4.57238 4.65004 4.69754 4.76512 4.80221 4.83774 4.95230 5.06970 5.12030 5.18607 5.44276 5.49553 5.60833 5.62174 5.67749 5.78724 5.80463 5.98627 6.04719 6.14043 6.19637 6.41996 6.45812 6.58123 6.81904 7.30213 7.36399 7.49784 8.89133 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010837 B = 0.003678 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2583.087672 B = 7610.830308 C = 9463.715589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.596 5.596 3 C 0.536 3.464 4 O -0.566 6.566 5 C 0.084 3.916 6 H 0.097 0.903 7 N -0.831 5.831 8 C -0.118 4.118 9 C 0.034 3.966 10 C -0.543 4.543 11 H 0.054 0.946 12 C 0.007 3.993 13 N -0.927 5.927 14 Si 0.960 3.040 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.268 1.268 18 C 0.197 3.803 19 H 0.080 0.920 20 C -0.143 4.143 21 C 0.502 3.498 22 N -0.840 5.840 23 O -0.579 6.579 24 C -0.102 4.102 25 C -0.122 4.122 26 C -0.132 4.132 27 C -0.123 4.123 28 C -0.116 4.116 29 C -0.111 4.111 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.342 0.658 34 H 0.351 0.649 35 H 0.040 0.960 36 H 0.068 0.932 37 H 0.001 0.999 38 H -0.001 1.001 39 H 0.264 0.736 40 H 0.128 0.872 41 H 0.145 0.855 42 H 0.418 0.582 43 H 0.402 0.598 44 H 0.091 0.909 45 H 0.120 0.880 46 H 0.141 0.859 47 H 0.155 0.845 48 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.798 -27.999 5.737 28.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.328 5.328 3 C 0.325 3.675 4 O -0.444 6.444 5 C -0.031 4.031 6 H 0.115 0.885 7 N -0.362 5.362 8 C -0.158 4.158 9 C -0.004 4.004 10 C -0.581 4.581 11 H 0.073 0.927 12 C -0.192 4.192 13 N -0.567 5.567 14 Si 0.784 3.216 15 H -0.195 1.195 16 H -0.208 1.208 17 H -0.193 1.193 18 C 0.093 3.907 19 H 0.098 0.902 20 C -0.183 4.183 21 C 0.288 3.712 22 N -0.405 5.405 23 O -0.457 6.457 24 C -0.104 4.104 25 C -0.140 4.140 26 C -0.150 4.150 27 C -0.141 4.141 28 C -0.134 4.134 29 C -0.129 4.129 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.155 0.845 34 H 0.165 0.835 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.020 0.980 38 H 0.017 0.983 39 H 0.073 0.927 40 H 0.146 0.854 41 H 0.162 0.838 42 H 0.250 0.750 43 H 0.233 0.767 44 H 0.109 0.891 45 H 0.138 0.862 46 H 0.159 0.841 47 H 0.172 0.828 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.768 -27.615 6.267 28.453 hybrid contribution -0.644 1.464 -1.355 2.096 sum 2.124 -26.151 4.912 26.693 Atomic orbital electron populations 1.22033 0.78321 1.04602 1.02494 1.47558 1.07283 1.04612 1.73374 1.20497 0.87323 0.85724 0.73988 1.90574 1.15679 1.87530 1.50651 1.21372 0.95173 0.90037 0.96551 0.88523 1.58714 1.10840 1.09247 1.57366 1.22157 0.99241 0.99917 0.94463 1.18933 0.93623 0.91919 0.95883 1.21569 1.30892 1.11001 0.94669 0.92733 1.25865 0.96220 0.95941 1.01170 1.70069 1.36944 1.16688 1.32952 0.85531 0.78916 0.77357 0.79762 1.19458 1.20794 1.19277 1.19502 0.97294 0.82236 0.91692 0.90215 1.22172 1.05939 1.00771 0.89434 1.21058 0.77906 0.84894 0.87389 1.43719 1.62134 1.27128 1.07503 1.90914 1.42516 1.24119 1.88194 1.20092 1.01437 0.94852 0.93978 1.20961 1.00330 0.99220 0.93510 1.21314 1.00417 0.95757 0.97528 1.21477 0.99369 0.93404 0.99877 1.21505 0.98552 1.01342 0.91965 1.21345 0.99571 0.91997 0.99954 0.91735 0.91440 0.88362 0.84522 0.83470 0.94103 0.91341 0.98032 0.98255 0.92709 0.85438 0.83782 0.75013 0.76713 0.89099 0.86176 0.84116 0.82762 0.82437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.60 8.24 127.77 1.05 2.65 16 2 N -0.60 -17.40 1.17 -826.79 -0.97 -18.36 16 3 C 0.54 20.71 5.82 87.66 0.51 21.22 16 4 O -0.57 -26.01 15.45 -3.06 -0.05 -26.05 16 5 C 0.08 3.29 2.38 44.17 0.11 3.40 16 6 H 0.10 3.68 7.29 -2.39 -0.02 3.66 16 7 N -0.83 -33.73 8.94 -171.81 -1.54 -35.27 16 8 C -0.12 -5.01 4.48 30.59 0.14 -4.88 16 9 C 0.03 1.73 4.74 29.85 0.14 1.87 16 10 C -0.54 -30.56 9.11 25.60 0.23 -30.32 16 11 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 12 C 0.01 0.37 5.46 84.65 0.46 0.83 16 13 N -0.93 -55.28 13.29 21.45 0.28 -55.00 16 14 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 15 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 18 C 0.20 4.79 2.00 44.24 0.09 4.88 16 19 H 0.08 2.61 6.73 -2.38 -0.02 2.60 16 20 C -0.14 -2.03 4.53 29.85 0.14 -1.90 16 21 C 0.50 10.41 7.96 87.66 0.70 11.11 16 22 N -0.84 -9.26 8.87 -173.53 -1.54 -10.80 16 23 O -0.58 -20.11 15.27 -3.04 -0.05 -20.16 16 24 C -0.10 -2.18 4.87 -19.87 -0.10 -2.28 16 25 C -0.12 -3.17 8.99 22.27 0.20 -2.97 16 26 C -0.13 -2.93 10.05 22.27 0.22 -2.71 16 27 C -0.12 -2.02 10.05 22.27 0.22 -1.79 16 28 C -0.12 -1.49 10.05 22.27 0.22 -1.27 16 29 C -0.11 -1.54 9.14 22.27 0.20 -1.33 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.87 5.00 -2.39 -0.01 1.85 16 32 H 0.10 1.76 7.29 -2.39 -0.02 1.74 16 33 H 0.34 14.10 8.58 -89.69 -0.77 13.33 16 34 H 0.35 14.07 7.55 -89.69 -0.68 13.39 16 35 H 0.04 1.82 8.14 -2.38 -0.02 1.81 16 36 H 0.07 2.73 6.31 -2.39 -0.02 2.72 16 37 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 38 H 0.00 -0.05 6.87 -2.39 -0.02 -0.06 16 39 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 40 H 0.13 1.16 7.22 -2.39 -0.02 1.14 16 41 H 0.14 0.90 6.21 -2.39 -0.01 0.89 16 42 H 0.42 1.05 8.83 -92.71 -0.82 0.24 16 43 H 0.40 4.63 8.93 -92.71 -0.83 3.80 16 44 H 0.09 2.91 7.27 -2.91 -0.02 2.89 16 45 H 0.12 2.58 8.06 -2.91 -0.02 2.55 16 46 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 47 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 48 H 0.16 1.01 6.05 -2.91 -0.02 0.99 16 Total: -1.00 -83.57 386.48 0.66 -82.91 By element: Atomic # 1 Polarization: 42.30 SS G_CDS: -2.06 Total: 40.24 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 4.54 Total: -3.50 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -3.76 Total: -119.43 kcal Atomic # 8 Polarization: -46.11 SS G_CDS: -0.09 Total: -46.21 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -83.57 0.66 -82.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424169482.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.748 kcal (2) G-P(sol) polarization free energy of solvation -83.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds