Wall clock time and date at job start Tue Mar 31 2020 17:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36011 * 116.99861 * 2 1 4 4 C 1.38507 * 120.08290 * 0.28440 * 3 2 1 5 5 C 1.38284 * 120.01883 * 180.27773 * 4 3 2 6 6 C 1.38263 * 120.17834 * 359.71213 * 5 4 3 7 7 C 1.38218 * 120.15946 * 0.02562 * 6 5 4 8 8 C 1.38721 * 119.98344 * 359.97438 * 7 6 5 9 9 N 1.39966 * 120.09386 * 179.97438 * 8 7 6 10 10 C 1.48539 * 110.99466 * 57.39718 * 9 8 7 11 11 C 1.54932 * 103.22489 * 200.27810 * 10 9 8 12 12 C 1.54598 * 102.92273 * 37.41993 * 11 10 9 13 13 H 1.09002 * 110.31174 * 96.95391 * 12 11 10 14 14 C 1.52997 * 110.39179 * 219.08302 * 12 11 10 15 15 N 1.46505 * 109.47156 * 292.15048 * 14 12 11 16 16 C 1.34767 * 120.00370 * 180.02562 * 15 14 12 17 17 O 1.21587 * 120.00102 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00511 * 179.97438 * 16 15 14 19 19 C 1.46496 * 120.00416 * 179.97438 * 18 16 15 20 20 C 1.50696 * 109.47242 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99982 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00203 * 180.02562 * 20 19 18 23 23 N 1.31517 * 120.00189 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 119.99750 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47024 * 90.00730 * 24 22 20 26 26 H 1.48504 * 109.47146 * 210.00136 * 24 22 20 27 27 H 1.48490 * 109.47370 * 330.00236 * 24 22 20 28 28 C 1.47897 * 110.99860 * 300.00736 * 9 8 7 29 29 H 1.09005 * 109.47316 * 59.99621 * 1 2 3 30 30 H 1.08997 * 109.47161 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47144 * 300.00040 * 1 2 3 32 32 H 1.07998 * 119.99181 * 359.97438 * 4 3 2 33 33 H 1.07999 * 119.91115 * 179.74528 * 5 4 3 34 34 H 1.07995 * 119.91368 * 180.02562 * 6 5 4 35 35 H 1.08004 * 120.00492 * 179.97438 * 7 6 5 36 36 H 1.08999 * 110.66816 * 318.71572 * 10 9 8 37 37 H 1.09005 * 110.66277 * 81.67846 * 10 9 8 38 38 H 1.08994 * 110.72994 * 279.05876 * 11 10 9 39 39 H 1.09002 * 110.72359 * 155.77140 * 11 10 9 40 40 H 1.08993 * 109.47324 * 52.14888 * 14 12 11 41 41 H 1.09001 * 109.47249 * 172.15261 * 14 12 11 42 42 H 0.96999 * 119.99612 * 359.97438 * 15 14 12 43 43 H 0.97006 * 119.99218 * 0.02562 * 18 16 15 44 44 H 1.09002 * 109.46856 * 300.00298 * 19 18 16 45 45 H 1.09003 * 109.46995 * 60.00134 * 19 18 16 46 46 H 0.97003 * 120.00022 * 180.02562 * 23 22 20 47 47 H 1.08997 * 109.92227 * 26.48393 * 28 9 8 48 48 H 1.08999 * 109.91658 * 265.18780 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2937 2.3746 0.0059 5 6 1.9228 3.6060 0.0001 6 6 3.3034 3.6812 -0.0056 7 6 4.0618 2.5256 -0.0061 8 6 3.4376 1.2868 -0.0003 9 7 4.2033 0.1151 -0.0013 10 6 5.1256 0.0811 1.1626 11 6 6.2048 -0.9428 0.7298 12 6 6.3714 -0.6525 -0.7795 13 1 7.2239 0.0060 -0.9463 14 6 6.5497 -1.9580 -1.5570 15 7 7.8366 -2.5637 -1.2058 16 6 8.2107 -3.7278 -1.7726 17 8 7.4799 -4.2756 -2.5752 18 7 9.3948 -4.2848 -1.4499 19 6 9.8011 -5.5504 -2.0657 20 6 11.1540 -5.9539 -1.5387 21 1 11.6608 -5.3298 -0.8175 22 6 11.7454 -7.1194 -1.9779 23 7 12.9259 -7.4718 -1.5177 24 14 10.8693 -8.1985 -3.2258 25 1 11.2526 -7.7798 -4.5981 26 1 11.2583 -9.6160 -3.0141 27 1 9.4007 -8.0579 -3.0574 28 6 5.0655 0.0465 -1.2010 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2152 2.3194 0.0102 33 1 1.3342 4.5115 0.0006 34 1 3.7903 4.6451 -0.0097 35 1 5.1401 2.5872 -0.0110 36 1 5.5707 1.0619 1.3295 37 1 4.6040 -0.2606 2.0567 38 1 5.8553 -1.9627 0.8901 39 1 7.1395 -0.7662 1.2619 40 1 5.7432 -2.6456 -1.3026 41 1 6.5260 -1.7500 -2.6267 42 1 8.4198 -2.1265 -0.5658 43 1 9.9777 -3.8478 -0.8093 44 1 9.0717 -6.3232 -1.8229 45 1 9.8540 -5.4277 -3.1475 46 1 13.3422 -8.2915 -1.8270 47 1 5.2822 1.0524 -1.5607 48 1 4.5705 -0.5312 -1.9816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426452074.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:57 Heat of formation + Delta-G solvation = -54.329263 kcal Electronic energy + Delta-G solvation = -27760.756816 eV Core-core repulsion = 23815.091761 eV Total energy + Delta-G solvation = -3945.665055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.61146 -40.90446 -39.80166 -38.08048 -36.40796 -35.83131 -34.41993 -33.34688 -31.10482 -30.81068 -29.78824 -29.42371 -27.93440 -26.15112 -24.02013 -23.81822 -22.94841 -22.00570 -21.65514 -21.24298 -19.78728 -19.17667 -18.29624 -17.78217 -17.59267 -17.11921 -16.67193 -16.57375 -16.37634 -16.02777 -15.72667 -15.30395 -15.17733 -15.06438 -15.00266 -14.79224 -14.41392 -14.26977 -14.11458 -13.90053 -13.36719 -13.07781 -13.03314 -12.95192 -12.85216 -12.68947 -12.57039 -12.25396 -11.96807 -11.92877 -11.90993 -11.84629 -11.63651 -11.58813 -11.27732 -10.90205 -10.29254 -9.80149 -9.62711 -9.47032 -9.05971 -8.38428 -6.44880 0.25771 0.48543 1.34464 1.36387 1.50177 1.88144 2.23939 2.30285 2.45383 2.73580 2.90759 2.97199 3.44543 3.59847 3.72580 3.83167 3.93067 4.06562 4.24791 4.29538 4.33592 4.39409 4.40958 4.41098 4.48033 4.57480 4.65891 4.70848 4.74241 4.76813 4.80580 4.87695 4.91071 5.02180 5.07343 5.10065 5.24312 5.27083 5.33213 5.41586 5.54064 5.55218 5.58588 5.81557 5.83233 6.00619 6.15851 6.31295 6.57208 6.68150 7.16368 7.30092 7.69854 8.76161 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027060 B = 0.001847 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.498583 B =15155.958459 C =15703.630272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.325 6.325 3 C 0.128 3.872 4 C -0.211 4.211 5 C -0.084 4.084 6 C -0.153 4.153 7 C -0.116 4.116 8 C 0.026 3.974 9 N -0.488 5.488 10 C 0.044 3.956 11 C -0.116 4.116 12 C -0.094 4.094 13 H 0.107 0.893 14 C 0.154 3.846 15 N -0.729 5.729 16 C 0.693 3.307 17 O -0.648 6.648 18 N -0.722 5.722 19 C 0.251 3.749 20 C -0.545 4.545 21 H 0.061 0.939 22 C 0.027 3.973 23 N -0.930 5.930 24 Si 0.937 3.063 25 H -0.265 1.265 26 H -0.272 1.272 27 H -0.262 1.262 28 C 0.052 3.948 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.146 0.854 35 H 0.138 0.862 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.048 0.952 41 H 0.055 0.945 42 H 0.411 0.589 43 H 0.406 0.594 44 H 0.009 0.991 45 H 0.009 0.991 46 H 0.272 0.728 47 H 0.065 0.935 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.368 27.525 6.526 37.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.238 6.238 3 C 0.081 3.919 4 C -0.230 4.230 5 C -0.102 4.102 6 C -0.171 4.171 7 C -0.135 4.135 8 C -0.069 4.069 9 N -0.209 5.209 10 C -0.082 4.082 11 C -0.154 4.154 12 C -0.114 4.114 13 H 0.125 0.875 14 C 0.030 3.970 15 N -0.386 5.386 16 C 0.393 3.607 17 O -0.530 6.530 18 N -0.375 5.375 19 C 0.127 3.873 20 C -0.583 4.583 21 H 0.079 0.921 22 C -0.173 4.173 23 N -0.569 5.569 24 Si 0.761 3.239 25 H -0.189 1.189 26 H -0.197 1.197 27 H -0.187 1.187 28 C -0.075 4.075 29 H 0.082 0.918 30 H 0.126 0.874 31 H 0.084 0.916 32 H 0.165 0.835 33 H 0.169 0.831 34 H 0.163 0.837 35 H 0.156 0.844 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.116 0.884 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.247 0.753 43 H 0.241 0.759 44 H 0.026 0.974 45 H 0.026 0.974 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.171 26.227 5.805 36.812 hybrid contribution 0.694 0.148 -0.047 0.711 sum -24.477 26.376 5.758 36.441 Atomic orbital electron populations 1.23295 0.77291 1.05044 1.02053 1.86232 1.22488 1.26841 1.88193 1.19221 0.91302 0.85042 0.96316 1.21485 1.01067 0.91898 1.08560 1.21340 0.94953 0.97581 0.96322 1.21275 0.94165 0.98750 1.02941 1.21634 1.00907 0.91847 0.99155 1.18506 0.90582 0.90000 1.07842 1.62324 1.21920 1.33554 1.03119 1.23333 0.92489 0.99079 0.93338 1.22591 0.99318 0.99330 0.94120 1.22162 0.98544 0.95129 0.95532 0.87515 1.21204 0.83606 0.93419 0.98779 1.44865 1.22563 1.22711 1.48461 1.16245 0.81786 0.81534 0.81155 1.90836 1.55634 1.65855 1.40725 1.45089 1.18916 1.25578 1.47953 1.18939 0.93847 0.81775 0.92787 1.21276 1.01972 1.08298 1.26716 0.92122 1.25567 0.95278 0.98553 0.97932 1.69978 1.16647 1.25311 1.44995 0.85868 0.79739 0.78518 0.79824 1.18945 1.19738 1.18673 1.22887 0.91576 1.00196 0.92861 0.91800 0.87393 0.91627 0.83490 0.83139 0.83661 0.84403 0.91820 0.90546 0.91812 0.88418 0.93341 0.92662 0.75263 0.75917 0.97357 0.97355 0.91846 0.91711 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.32 -6.87 10.24 -93.68 -0.96 -7.83 16 3 C 0.13 2.49 6.70 22.59 0.15 2.64 16 4 C -0.21 -2.94 9.04 22.34 0.20 -2.74 16 5 C -0.08 -0.94 10.04 22.29 0.22 -0.71 16 6 C -0.15 -1.78 10.04 22.27 0.22 -1.56 16 7 C -0.12 -1.69 7.90 22.38 0.18 -1.51 16 8 C 0.03 0.49 4.87 38.22 0.19 0.68 16 9 N -0.49 -9.92 5.03 -682.26 -3.44 -13.36 16 10 C 0.04 0.72 6.41 86.65 0.56 1.27 16 11 C -0.12 -1.85 6.35 31.80 0.20 -1.65 16 12 C -0.09 -1.58 3.04 -9.91 -0.03 -1.61 16 13 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 14 C 0.15 3.84 4.76 86.38 0.41 4.25 16 15 N -0.73 -20.11 5.41 -478.55 -2.59 -22.70 16 16 C 0.69 27.68 8.57 179.06 1.53 29.21 16 17 O -0.65 -31.86 16.34 -3.99 -0.07 -31.93 16 18 N -0.72 -30.02 5.55 -482.31 -2.68 -32.69 16 19 C 0.25 12.75 4.50 85.63 0.38 13.14 16 20 C -0.54 -30.55 9.83 25.60 0.25 -30.30 16 21 H 0.06 3.54 7.84 -2.91 -0.02 3.52 16 22 C 0.03 1.55 5.47 84.65 0.46 2.01 16 23 N -0.93 -55.96 13.96 21.45 0.30 -55.66 16 24 Si 0.94 44.93 27.47 68.60 1.88 46.82 16 25 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 27 H -0.26 -12.62 6.54 99.48 0.65 -11.97 16 28 C 0.05 0.95 6.18 86.45 0.53 1.49 16 29 H 0.06 0.58 7.68 -2.38 -0.02 0.57 16 30 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 0.57 7.65 -2.39 -0.02 0.55 16 32 H 0.15 1.38 6.30 -2.91 -0.02 1.36 16 33 H 0.15 0.82 8.06 -2.91 -0.02 0.80 16 34 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 35 H 0.14 1.60 7.05 -2.91 -0.02 1.58 16 36 H 0.06 0.85 6.65 -2.39 -0.02 0.84 16 37 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 38 H 0.06 1.29 7.79 -2.39 -0.02 1.28 16 39 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.05 1.43 8.03 -2.39 -0.02 1.41 16 41 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.41 8.41 8.38 -92.71 -0.78 7.63 16 43 H 0.41 14.49 8.34 -92.70 -0.77 13.71 16 44 H 0.01 0.46 7.20 -2.39 -0.02 0.44 16 45 H 0.01 0.45 7.57 -2.39 -0.02 0.43 16 46 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 47 H 0.06 1.02 6.70 -2.39 -0.02 1.00 16 48 H 0.07 1.51 7.68 -2.39 -0.02 1.49 16 Total: -1.00 -76.79 388.27 -1.58 -78.37 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -0.62 Total: 23.06 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 6.58 Total: 15.93 kcal Atomic # 7 Polarization: -116.01 SS G_CDS: -8.40 Total: -124.41 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -1.02 Total: -39.76 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.88 Total: 46.82 kcal Total: -76.79 -1.58 -78.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426452074.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.040 kcal (2) G-P(sol) polarization free energy of solvation -76.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds