Wall clock time and date at job start Tue Mar 31 2020 17:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00534 * 2 1 4 4 C 1.53001 * 109.47738 * 180.02562 * 3 2 1 5 5 N 1.46507 * 109.46967 * 64.99835 * 4 3 2 6 6 C 1.46494 * 119.99827 * 262.91224 * 5 4 3 7 7 C 1.50697 * 109.47359 * 269.99754 * 6 5 4 8 8 C 1.38679 * 120.42154 * 269.72496 * 7 6 5 9 9 C 1.38621 * 118.42088 * 179.77805 * 8 7 6 10 10 C 1.38234 * 119.16054 * 0.51832 * 9 8 7 11 11 N 1.31851 * 120.76620 * 359.72099 * 10 9 8 12 12 C 1.31894 * 121.72340 * 0.02562 * 11 10 9 13 13 C 1.34769 * 119.99696 * 82.91325 * 5 4 3 14 14 O 1.21589 * 119.99811 * 184.94361 * 13 5 4 15 15 N 1.34775 * 120.00377 * 4.93722 * 13 5 4 16 16 C 1.46497 * 120.00214 * 185.49570 * 15 13 5 17 17 C 1.52999 * 109.47345 * 184.94344 * 16 15 13 18 18 C 1.50705 * 115.54825 * 54.11111 * 17 16 15 19 19 H 1.08000 * 119.99840 * 215.59245 * 18 17 16 20 20 C 1.37875 * 119.99869 * 35.31483 * 18 17 16 21 21 N 1.31509 * 120.00268 * 8.42676 * 20 18 17 22 22 Si 1.86803 * 119.99466 * 188.42376 * 20 18 17 23 23 H 1.48497 * 109.47538 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46936 * 120.00503 * 22 20 18 25 25 H 1.48501 * 109.46735 * 239.99764 * 22 20 18 26 26 C 1.52998 * 117.50277 * 199.77988 * 17 16 15 27 27 C 1.52996 * 117.49993 * 268.44090 * 17 16 15 28 28 H 1.08994 * 109.47512 * 180.02562 * 1 2 3 29 29 H 1.09009 * 109.46719 * 300.00209 * 1 2 3 30 30 H 1.09001 * 109.46936 * 59.99630 * 1 2 3 31 31 H 1.08993 * 109.47254 * 59.99911 * 3 2 1 32 32 H 1.09002 * 109.47218 * 300.00322 * 3 2 1 33 33 H 1.08999 * 109.46914 * 305.00601 * 4 3 2 34 34 H 1.08991 * 109.47421 * 185.00057 * 4 3 2 35 35 H 1.09004 * 109.47657 * 30.00159 * 6 5 4 36 36 H 1.09001 * 109.47247 * 149.99897 * 6 5 4 37 37 H 1.08001 * 120.78491 * 0.02562 * 8 7 6 38 38 H 1.08001 * 120.42391 * 180.21796 * 9 8 7 39 39 H 1.08000 * 119.61865 * 179.74451 * 10 9 8 40 40 H 1.08003 * 119.61750 * 180.02562 * 12 11 10 41 41 H 0.96999 * 119.99875 * 5.50011 * 15 13 5 42 42 H 1.08995 * 109.47245 * 64.94366 * 16 15 13 43 43 H 1.09003 * 109.47417 * 304.94574 * 16 15 13 44 44 H 0.96999 * 119.99794 * 184.97997 * 21 20 18 45 45 H 1.08998 * 117.50019 * 215.00488 * 26 17 16 46 46 H 1.09004 * 117.49786 * 0.02562 * 26 17 16 47 47 H 1.09001 * 117.49943 * 359.97438 * 27 17 16 48 48 H 1.09002 * 117.49847 * 144.97061 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2528 6 6 4.2548 -0.8731 -1.2996 7 6 5.7041 -1.1146 -0.9644 8 6 6.6619 -1.1401 -1.9670 9 6 7.9834 -1.3610 -1.6115 10 6 8.2988 -1.5580 -0.2801 11 7 7.3609 -1.5320 0.6462 12 6 6.0945 -1.3196 0.3451 13 6 4.1239 1.3160 -2.3615 14 8 4.4017 0.7884 -3.4211 15 7 3.9641 2.6527 -2.2958 16 6 4.0057 3.4565 -3.5198 17 6 3.9226 4.9408 -3.1584 18 6 4.9465 5.4261 -2.1648 19 1 4.6806 6.1823 -1.4410 20 6 6.2212 4.9006 -2.1761 21 7 6.5944 4.1016 -3.1517 22 14 7.4178 5.3236 -0.8055 23 1 6.7581 6.2343 0.1643 24 1 7.8344 4.0791 -0.1106 25 1 8.6123 5.9930 -1.3804 26 6 3.4892 5.9125 -4.2578 27 6 2.5331 5.5794 -3.1098 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 1.6888 1.8463 0.8899 32 1 1.6887 1.8463 -0.8900 33 1 3.8515 0.5680 0.8409 34 1 3.9786 2.1763 0.0889 35 1 3.6237 -1.3896 -0.5764 36 1 4.0454 -1.2515 -2.3002 37 1 6.3853 -0.9874 -2.9998 38 1 8.7562 -1.3838 -2.3656 39 1 9.3255 -1.7349 0.0047 40 1 5.3541 -1.3050 1.1313 41 1 3.8215 3.0824 -1.4379 42 1 3.1633 3.1903 -4.1581 43 1 4.9384 3.2633 -4.0499 44 1 7.4649 3.6747 -3.1227 45 1 3.9447 6.9028 -4.2625 46 1 3.2629 5.4943 -5.2386 47 1 1.6782 4.9421 -3.3358 48 1 2.3594 6.3502 -2.3590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431213323.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:06 Heat of formation + Delta-G solvation = -21.318131 kcal Electronic energy + Delta-G solvation = -30119.321863 eV Core-core repulsion = 26175.088278 eV Total energy + Delta-G solvation = -3944.233585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.49554 -40.66558 -38.86626 -38.46062 -36.54787 -34.98769 -34.15909 -33.52457 -32.62314 -30.59524 -28.35117 -27.55216 -27.12413 -26.15368 -24.60606 -23.85427 -23.12017 -22.89728 -21.12661 -20.53395 -19.21618 -18.06203 -18.02175 -17.56288 -17.17204 -17.10408 -16.87700 -16.68165 -16.34549 -15.84699 -15.68793 -15.62445 -15.15198 -14.82696 -14.57478 -14.36448 -14.32791 -13.96692 -13.64845 -13.60965 -13.41112 -13.25554 -12.92526 -12.88150 -12.81807 -12.59357 -12.45220 -12.30080 -12.04206 -11.98952 -11.44934 -11.08641 -11.02280 -10.74240 -10.61802 -10.56961 -10.51539 -10.11328 -9.99107 -9.83979 -9.30187 -8.00407 -6.17868 0.09937 0.31639 1.35844 1.42905 1.50057 1.91130 2.37080 2.40680 2.86199 2.90142 3.01546 3.30111 3.53342 3.68663 3.86046 3.91897 4.07284 4.08089 4.14250 4.16572 4.27850 4.38224 4.46590 4.55603 4.56265 4.58945 4.62723 4.66436 4.76067 4.79215 4.83060 4.86726 4.90303 4.91698 4.97753 5.12472 5.19809 5.28205 5.37887 5.54811 5.61290 5.65694 5.75335 5.94696 5.97547 6.11298 6.28085 6.39121 6.83063 6.97707 7.27929 7.46328 7.83745 8.91831 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.008396 B = 0.005458 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3334.174609 B = 5128.535624 C = 7048.346447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.401 6.401 3 C 0.048 3.952 4 C 0.109 3.891 5 N -0.618 5.618 6 C 0.188 3.812 7 C -0.159 4.159 8 C -0.069 4.069 9 C -0.179 4.179 10 C 0.090 3.910 11 N -0.507 5.507 12 C 0.107 3.893 13 C 0.699 3.301 14 O -0.639 6.639 15 N -0.703 5.703 16 C 0.192 3.808 17 C 0.010 3.990 18 C -0.498 4.498 19 H 0.059 0.941 20 C 0.041 3.959 21 N -0.885 5.885 22 Si 0.935 3.065 23 H -0.260 1.260 24 H -0.290 1.290 25 H -0.290 1.290 26 C -0.200 4.200 27 C -0.181 4.181 28 H 0.097 0.903 29 H 0.055 0.945 30 H 0.033 0.967 31 H 0.085 0.915 32 H 0.037 0.963 33 H 0.112 0.888 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.071 0.929 37 H 0.118 0.882 38 H 0.150 0.850 39 H 0.180 0.820 40 H 0.178 0.822 41 H 0.398 0.602 42 H 0.015 0.985 43 H 0.072 0.928 44 H 0.253 0.747 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.215 -10.119 9.364 15.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.320 6.320 3 C -0.030 4.030 4 C -0.014 4.014 5 N -0.353 5.353 6 C 0.065 3.935 7 C -0.163 4.163 8 C -0.096 4.096 9 C -0.199 4.199 10 C -0.067 4.067 11 N -0.216 5.216 12 C -0.050 4.050 13 C 0.401 3.599 14 O -0.522 6.522 15 N -0.355 5.355 16 C 0.067 3.933 17 C 0.010 3.990 18 C -0.536 4.536 19 H 0.077 0.923 20 C -0.161 4.161 21 N -0.522 5.522 22 Si 0.762 3.238 23 H -0.184 1.184 24 H -0.216 1.216 25 H -0.217 1.217 26 C -0.239 4.239 27 C -0.218 4.218 28 H 0.115 0.885 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.103 0.897 32 H 0.055 0.945 33 H 0.130 0.870 34 H 0.102 0.898 35 H 0.136 0.864 36 H 0.090 0.910 37 H 0.136 0.864 38 H 0.168 0.832 39 H 0.197 0.803 40 H 0.195 0.805 41 H 0.234 0.766 42 H 0.033 0.967 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.093 0.907 46 H 0.091 0.909 47 H 0.103 0.897 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.527 -10.813 9.367 15.725 hybrid contribution 0.485 1.055 -0.560 1.288 sum -6.042 -9.758 8.808 14.468 Atomic orbital electron populations 1.22857 0.80008 1.03570 1.00325 1.87819 1.20890 1.27762 1.95527 1.23015 0.93492 0.85230 1.01249 1.21753 0.92917 0.99885 0.86871 1.47011 1.71173 1.08101 1.09051 1.20060 0.90066 0.79920 1.03469 1.21485 0.98244 1.01593 0.94952 1.21743 0.93758 0.93998 1.00108 1.22399 0.97095 1.01505 0.98870 1.23176 0.99883 0.94815 0.88828 1.67725 1.02060 1.13670 1.38159 1.22986 0.93180 0.94157 0.94720 1.16112 0.77909 0.82099 0.83829 1.90782 1.58060 1.73104 1.30208 1.44845 1.75526 1.03971 1.11172 1.20481 0.99155 0.88674 0.84975 1.19238 0.92797 0.89787 0.97211 1.20679 0.94413 1.22874 1.15620 0.92264 1.25454 0.98853 0.95248 0.96560 1.70063 1.20368 1.30867 1.30860 0.85864 0.79594 0.77787 0.80568 1.18362 1.21622 1.21680 1.22922 1.06044 1.01340 0.93558 1.22932 0.93627 1.04049 1.01186 0.88496 0.92649 0.94856 0.89709 0.94453 0.87019 0.89790 0.86386 0.91030 0.86381 0.83243 0.80301 0.80485 0.76579 0.96724 0.91034 0.93720 0.90669 0.90870 0.89677 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.40 -8.82 10.40 -148.98 -1.55 -10.37 16 3 C 0.05 1.05 6.22 71.98 0.45 1.50 16 4 C 0.11 2.67 5.57 86.38 0.48 3.15 16 5 N -0.62 -19.66 2.42 -844.21 -2.04 -21.71 16 6 C 0.19 5.33 5.56 85.63 0.48 5.80 16 7 C -0.16 -4.64 5.48 -19.77 -0.11 -4.75 16 8 C -0.07 -2.23 9.86 22.47 0.22 -2.01 16 9 C -0.18 -4.96 10.11 22.36 0.23 -4.73 16 10 C 0.09 2.33 11.18 84.69 0.95 3.28 16 11 N -0.51 -14.37 10.36 -195.83 -2.03 -16.40 16 12 C 0.11 2.80 10.86 84.67 0.92 3.72 16 13 C 0.70 29.20 8.20 179.06 1.47 30.67 16 14 O -0.64 -31.58 15.77 -4.00 -0.06 -31.64 16 15 N -0.70 -29.62 5.13 -478.55 -2.45 -32.08 16 16 C 0.19 9.11 4.75 86.38 0.41 9.52 16 17 C 0.01 0.48 1.96 -52.93 -0.10 0.37 16 18 C -0.50 -24.68 8.42 25.60 0.22 -24.47 16 19 H 0.06 2.90 7.83 -2.91 -0.02 2.88 16 20 C 0.04 2.10 5.19 84.66 0.44 2.53 16 21 N -0.88 -48.77 10.67 21.45 0.23 -48.55 16 22 Si 0.93 41.50 29.55 68.60 2.03 43.52 16 23 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 24 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 25 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 26 C -0.20 -8.49 9.96 30.62 0.30 -8.18 16 27 C -0.18 -6.92 9.92 30.62 0.30 -6.62 16 28 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.04 0.97 8.13 -2.39 -0.02 0.95 16 33 H 0.11 2.16 8.02 -2.39 -0.02 2.14 16 34 H 0.08 2.21 6.48 -2.39 -0.02 2.19 16 35 H 0.12 2.61 7.77 -2.38 -0.02 2.60 16 36 H 0.07 2.31 7.31 -2.39 -0.02 2.29 16 37 H 0.12 4.26 7.95 -2.91 -0.02 4.24 16 38 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 39 H 0.18 3.45 8.06 -2.91 -0.02 3.42 16 40 H 0.18 3.50 8.06 -2.91 -0.02 3.48 16 41 H 0.40 15.56 5.89 -92.71 -0.55 15.01 16 42 H 0.01 0.68 8.09 -2.39 -0.02 0.67 16 43 H 0.07 4.03 5.94 -2.39 -0.01 4.02 16 44 H 0.25 13.92 8.32 -92.71 -0.77 13.14 16 45 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 46 H 0.07 2.97 8.14 -2.38 -0.02 2.95 16 47 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 48 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -66.55 400.92 2.42 -64.13 By element: Atomic # 1 Polarization: 41.16 SS G_CDS: 0.41 Total: 41.57 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 7.90 Total: 11.51 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -6.30 Total: -118.73 kcal Atomic # 8 Polarization: -40.40 SS G_CDS: -1.61 Total: -42.01 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.52 kcal Total: -66.55 2.42 -64.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431213323.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.811 kcal (2) G-P(sol) polarization free energy of solvation -66.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds