Wall clock time and date at job start Tue Mar 31 2020 17:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 114.00381 * 2 1 4 4 C 1.52997 * 109.47320 * 180.02562 * 3 2 1 5 5 N 1.46894 * 109.47316 * 65.86059 * 4 3 2 6 6 C 1.47899 * 111.00178 * 175.79529 * 5 4 3 7 7 C 1.54001 * 107.05792 * 214.15976 * 6 5 4 8 8 C 1.54593 * 105.14168 * 1.22153 * 7 6 5 9 9 H 1.08995 * 110.72726 * 263.42558 * 8 7 6 10 10 N 1.46493 * 110.72451 * 140.31605 * 8 7 6 11 11 C 1.34776 * 119.99980 * 86.45316 * 10 8 7 12 12 O 1.21589 * 120.00259 * 0.02562 * 11 10 8 13 13 N 1.34780 * 120.00175 * 179.97438 * 11 10 8 14 14 C 1.39956 * 120.00195 * 184.91386 * 13 11 10 15 15 C 1.39291 * 119.94551 * 324.18350 * 14 13 11 16 16 C 1.38491 * 120.42561 * 179.76167 * 15 14 13 17 17 C 1.37687 * 120.32130 * 0.51269 * 16 15 14 18 18 C 1.40739 * 119.88115 * 359.74379 * 17 16 15 19 19 C 1.41411 * 120.20868 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00297 * 145.97021 * 19 18 17 21 21 C 1.39937 * 119.99796 * 325.97458 * 19 18 17 22 22 N 1.30828 * 120.00195 * 170.41955 * 21 19 18 23 23 Si 1.86806 * 119.99714 * 350.42001 * 21 19 18 24 24 H 1.48496 * 109.46914 * 88.62315 * 23 21 19 25 25 H 1.48501 * 109.46753 * 208.61795 * 23 21 19 26 26 H 1.48495 * 109.47257 * 328.61883 * 23 21 19 27 27 C 1.38234 * 119.94765 * 144.45345 * 14 13 11 28 28 C 1.48540 * 110.99691 * 58.39866 * 5 4 3 29 29 H 1.08997 * 109.47224 * 59.99359 * 1 2 3 30 30 H 1.08994 * 109.47603 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46618 * 300.00171 * 1 2 3 32 32 H 1.08998 * 109.46950 * 300.00490 * 3 2 1 33 33 H 1.08998 * 109.47016 * 60.00091 * 3 2 1 34 34 H 1.09004 * 109.46970 * 185.86603 * 4 3 2 35 35 H 1.09003 * 109.46936 * 305.86296 * 4 3 2 36 36 H 1.09001 * 109.91781 * 333.50436 * 6 5 4 37 37 H 1.08999 * 109.91960 * 94.60765 * 6 5 4 38 38 H 1.09000 * 110.30831 * 120.14376 * 7 6 5 39 39 H 1.09004 * 110.30596 * 242.20637 * 7 6 5 40 40 H 0.97004 * 120.00341 * 266.45678 * 10 8 7 41 41 H 0.97003 * 119.99490 * 4.91590 * 13 11 10 42 42 H 1.08001 * 119.78390 * 0.02562 * 15 14 13 43 43 H 1.08003 * 119.83575 * 180.23566 * 16 15 14 44 44 H 1.07997 * 120.05517 * 179.76615 * 17 16 15 45 45 H 0.97004 * 119.99879 * 179.97438 * 22 21 19 46 46 H 1.08001 * 120.16161 * 359.96363 * 27 14 13 47 47 H 1.08995 * 110.66689 * 278.15127 * 28 5 4 48 48 H 1.08995 * 110.66850 * 41.29249 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9784 0.5815 -1.2647 6 6 5.4547 0.5405 -1.3439 7 6 5.8339 0.7516 -2.8215 8 6 4.4894 0.9443 -3.5598 9 1 4.1544 0.0063 -4.0023 10 7 4.6048 1.9860 -4.5834 11 6 5.0417 1.6713 -5.8189 12 8 5.3396 0.5227 -6.0842 13 7 5.1474 2.6295 -6.7608 14 6 5.5019 2.2872 -8.0707 15 6 6.4147 1.2599 -8.2981 16 6 6.7688 0.9096 -9.5904 17 6 6.2298 1.5808 -10.6650 18 6 5.3104 2.6245 -10.4503 19 6 4.7521 3.3182 -11.5489 20 1 3.7369 3.6829 -11.4978 21 6 5.5152 3.5318 -12.7023 22 7 4.9488 4.0029 -13.7834 23 14 7.3426 3.1443 -12.6982 24 1 7.5489 1.7267 -13.0892 25 1 8.0387 4.0308 -13.6652 26 1 7.8929 3.3676 -11.3372 27 6 4.9499 2.9728 -9.1366 28 6 3.5329 1.3930 -2.4264 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6886 1.8463 -0.8899 33 1 1.6887 1.8463 0.8900 34 1 3.9785 2.1750 0.1044 35 1 3.8504 0.5555 0.8320 36 1 5.8815 1.3366 -0.7338 37 1 5.8184 -0.4273 -0.9987 38 1 6.4556 1.6404 -2.9293 39 1 6.3566 -0.1240 -3.2066 40 1 4.3669 2.9023 -4.3719 41 1 4.9778 3.5565 -6.5307 42 1 6.8457 0.7303 -7.4614 43 1 7.4746 0.1090 -9.7558 44 1 6.5119 1.3066 -11.6707 45 1 5.4779 4.1513 -14.5828 46 1 4.2449 3.7720 -8.9612 47 1 2.4987 1.1630 -2.6824 48 1 3.6522 2.4567 -2.2210 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455923773.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:42 Heat of formation + Delta-G solvation = -36.471719 kcal Electronic energy + Delta-G solvation = -27872.531088 eV Core-core repulsion = 23927.640395 eV Total energy + Delta-G solvation = -3944.890693 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.38821 -39.35119 -37.99067 -37.42854 -34.75991 -34.30289 -33.17700 -32.01403 -30.24379 -29.21710 -28.70805 -27.86651 -26.36294 -25.06449 -23.35180 -22.27320 -21.19552 -21.06406 -20.78815 -20.10799 -18.14962 -17.80864 -17.00893 -16.83240 -16.37857 -15.92599 -15.64416 -15.43960 -15.11315 -14.90985 -14.54833 -14.32892 -14.04104 -13.84081 -13.67095 -13.45117 -13.15279 -12.71664 -12.70635 -12.62899 -12.15163 -12.00452 -11.90424 -11.72874 -11.64155 -11.57006 -11.27365 -11.01402 -10.88695 -10.71734 -10.53270 -10.19044 -10.00335 -9.75936 -9.63053 -9.28220 -9.08673 -8.94732 -8.77351 -7.62041 -7.11347 -6.83276 -4.46310 2.46936 2.66454 2.77993 3.16873 3.26133 3.35168 3.40593 3.49163 3.64766 4.04354 4.21423 4.38058 4.49973 4.59332 4.66028 4.75428 4.81807 4.88358 4.92910 4.98027 5.02490 5.09917 5.14932 5.30175 5.36298 5.41982 5.44371 5.56639 5.65891 5.86686 5.94617 6.05524 6.32575 6.41017 6.43953 6.53162 6.57216 6.59042 6.73752 6.77510 6.85419 7.03485 7.32441 7.39183 7.60384 7.72260 7.89855 8.12568 8.25233 8.40815 8.66151 8.83310 8.88825 10.19936 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025759 B = 0.002004 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.726715 B =13970.179804 C =14585.896364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.375 6.375 3 C 0.062 3.938 4 C 0.049 3.951 5 N -0.503 5.503 6 C 0.037 3.963 7 C -0.144 4.144 8 C 0.165 3.835 9 H 0.104 0.896 10 N -0.744 5.744 11 C 0.702 3.298 12 O -0.567 6.567 13 N -0.682 5.682 14 C 0.180 3.820 15 C -0.222 4.222 16 C -0.072 4.072 17 C -0.241 4.241 18 C 0.106 3.894 19 C -0.453 4.453 20 H 0.089 0.911 21 C 0.082 3.918 22 N -0.822 5.822 23 Si 0.915 3.085 24 H -0.270 1.270 25 H -0.295 1.295 26 H -0.246 1.246 27 C -0.228 4.228 28 C 0.029 3.971 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.037 0.963 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.393 0.607 41 H 0.398 0.602 42 H 0.114 0.886 43 H 0.098 0.902 44 H 0.103 0.897 45 H 0.283 0.717 46 H 0.103 0.897 47 H 0.090 0.910 48 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.175 -0.882 26.877 27.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.293 6.293 3 C -0.015 4.015 4 C -0.080 4.080 5 N -0.228 5.228 6 C -0.091 4.091 7 C -0.183 4.183 8 C 0.059 3.941 9 H 0.122 0.878 10 N -0.400 5.400 11 C 0.403 3.597 12 O -0.443 6.443 13 N -0.329 5.329 14 C 0.087 3.913 15 C -0.243 4.243 16 C -0.091 4.091 17 C -0.261 4.261 18 C 0.102 3.898 19 C -0.482 4.482 20 H 0.107 0.893 21 C -0.135 4.135 22 N -0.448 5.448 23 Si 0.743 3.257 24 H -0.197 1.197 25 H -0.223 1.223 26 H -0.169 1.169 27 C -0.250 4.250 28 C -0.099 4.099 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.226 0.774 41 H 0.232 0.768 42 H 0.132 0.868 43 H 0.116 0.884 44 H 0.121 0.879 45 H 0.094 0.906 46 H 0.121 0.879 47 H 0.108 0.892 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.075 -2.546 26.396 26.697 hybrid contribution 0.588 1.927 0.139 2.019 sum -2.486 -0.619 26.535 26.658 Atomic orbital electron populations 1.22746 0.81391 1.02861 0.99684 1.88008 1.19144 1.26913 1.95255 1.22587 0.93260 0.85529 1.00147 1.22338 0.93823 0.98309 0.93508 1.64743 1.09307 1.47457 1.01296 1.22882 0.87768 1.01840 0.96565 1.22865 0.98192 1.03246 0.94005 1.21575 0.94098 0.91953 0.86477 0.87793 1.45104 1.72621 1.11613 1.10637 1.15928 0.78567 0.85158 0.80073 1.90940 1.54915 1.18704 1.79749 1.42599 1.72450 1.09195 1.08615 1.17326 0.95647 0.97560 0.80741 1.20548 1.03970 1.03229 0.96560 1.20542 0.98100 0.97908 0.92554 1.21188 1.06661 1.00806 0.97419 1.17509 0.90058 0.90131 0.92079 1.19385 1.01422 1.31568 0.95870 0.89275 1.26087 1.01426 0.92043 0.93913 1.69640 1.38626 1.34743 1.01792 0.86303 0.81955 0.77911 0.79529 1.19655 1.22282 1.16944 1.20762 1.07691 1.05211 0.91305 1.23450 1.00107 0.95651 0.90708 0.94142 0.89557 0.94411 0.93117 0.93016 0.93099 0.89424 0.93710 0.89869 0.91038 0.90042 0.77366 0.76816 0.86767 0.88418 0.87908 0.90636 0.87880 0.89212 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.37 -3.49 10.66 -35.23 -0.38 -3.87 16 3 C 0.06 0.43 5.91 37.16 0.22 0.65 16 4 C 0.05 0.34 5.22 -3.83 -0.02 0.32 16 5 N -0.50 -4.46 5.31 -230.45 -1.22 -5.69 16 6 C 0.04 0.31 6.70 -2.75 -0.02 0.29 16 7 C -0.14 -1.43 6.67 -25.37 -0.17 -1.60 16 8 C 0.17 1.80 3.35 -66.07 -0.22 1.58 16 9 H 0.10 1.42 7.69 -51.93 -0.40 1.02 16 10 N -0.74 -8.45 5.15 -56.86 -0.29 -8.74 16 11 C 0.70 11.53 8.40 -86.92 -0.73 10.80 16 12 O -0.57 -11.71 13.53 5.29 0.07 -11.64 16 13 N -0.68 -11.31 5.34 -14.27 -0.08 -11.38 16 14 C 0.18 3.84 6.28 -83.76 -0.53 3.32 16 15 C -0.22 -5.01 8.70 -39.10 -0.34 -5.35 16 16 C -0.07 -1.65 10.02 -39.69 -0.40 -2.05 16 17 C -0.24 -5.96 7.04 -38.84 -0.27 -6.23 16 18 C 0.11 2.71 5.09 -106.85 -0.54 2.16 16 19 C -0.45 -12.35 9.60 -37.74 -0.36 -12.72 16 20 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 21 C 0.08 2.19 5.48 -17.34 -0.10 2.09 16 22 N -0.82 -22.32 13.93 55.55 0.77 -21.55 16 23 Si 0.92 21.25 24.43 -169.99 -4.15 17.10 16 24 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.25 -5.81 6.81 56.52 0.38 -5.43 16 27 C -0.23 -5.24 9.71 -38.69 -0.38 -5.62 16 28 C 0.03 0.25 4.94 -1.89 -0.01 0.24 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.05 0.33 6.60 -51.93 -0.34 -0.01 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.05 0.28 7.97 -51.93 -0.41 -0.13 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.04 0.31 7.67 -51.93 -0.40 -0.08 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 39 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.39 3.21 8.54 -40.82 -0.35 2.86 16 41 H 0.40 5.09 8.84 -40.82 -0.36 4.73 16 42 H 0.11 2.57 6.25 -52.49 -0.33 2.24 16 43 H 0.10 1.97 8.06 -52.48 -0.42 1.55 16 44 H 0.10 2.53 4.49 -52.49 -0.24 2.29 16 45 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 46 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 47 H 0.09 0.80 7.52 -51.93 -0.39 0.41 16 48 H 0.05 0.33 7.89 -51.93 -0.41 -0.08 16 LS Contribution 383.88 15.07 5.78 5.78 Total: -1.00 -32.37 383.88 -9.70 -42.07 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: -7.46 Total: 8.71 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -2.75 Total: -10.81 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: -0.82 Total: -47.35 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.30 Total: -15.50 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.15 Total: 17.10 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.37 -9.70 -42.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455923773.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.594 kcal (2) G-P(sol) polarization free energy of solvation -32.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds