Wall clock time and date at job start Tue Mar 31 2020 17:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 114.00381 * 2 1 4 4 C 1.52997 * 109.47320 * 180.02562 * 3 2 1 5 5 N 1.46894 * 109.47316 * 65.86059 * 4 3 2 6 6 C 1.47899 * 111.00178 * 175.79529 * 5 4 3 7 7 C 1.54001 * 107.05792 * 214.15976 * 6 5 4 8 8 C 1.54593 * 105.14168 * 1.22153 * 7 6 5 9 9 H 1.08995 * 110.72726 * 263.42558 * 8 7 6 10 10 N 1.46493 * 110.72451 * 140.31605 * 8 7 6 11 11 C 1.34776 * 119.99980 * 86.45316 * 10 8 7 12 12 O 1.21589 * 120.00259 * 0.02562 * 11 10 8 13 13 N 1.34780 * 120.00175 * 179.97438 * 11 10 8 14 14 C 1.39956 * 120.00195 * 184.91386 * 13 11 10 15 15 C 1.39291 * 119.94551 * 324.18350 * 14 13 11 16 16 C 1.38491 * 120.42561 * 179.76167 * 15 14 13 17 17 C 1.37687 * 120.32130 * 0.51269 * 16 15 14 18 18 C 1.40739 * 119.88115 * 359.74379 * 17 16 15 19 19 C 1.41411 * 120.20868 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00297 * 145.97021 * 19 18 17 21 21 C 1.39937 * 119.99796 * 325.97458 * 19 18 17 22 22 N 1.30828 * 120.00195 * 170.41955 * 21 19 18 23 23 Si 1.86806 * 119.99714 * 350.42001 * 21 19 18 24 24 H 1.48496 * 109.46914 * 88.62315 * 23 21 19 25 25 H 1.48501 * 109.46753 * 208.61795 * 23 21 19 26 26 H 1.48495 * 109.47257 * 328.61883 * 23 21 19 27 27 C 1.38234 * 119.94765 * 144.45345 * 14 13 11 28 28 C 1.48540 * 110.99691 * 58.39866 * 5 4 3 29 29 H 1.08997 * 109.47224 * 59.99359 * 1 2 3 30 30 H 1.08994 * 109.47603 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46618 * 300.00171 * 1 2 3 32 32 H 1.08998 * 109.46950 * 300.00490 * 3 2 1 33 33 H 1.08998 * 109.47016 * 60.00091 * 3 2 1 34 34 H 1.09004 * 109.46970 * 185.86603 * 4 3 2 35 35 H 1.09003 * 109.46936 * 305.86296 * 4 3 2 36 36 H 1.09001 * 109.91781 * 333.50436 * 6 5 4 37 37 H 1.08999 * 109.91960 * 94.60765 * 6 5 4 38 38 H 1.09000 * 110.30831 * 120.14376 * 7 6 5 39 39 H 1.09004 * 110.30596 * 242.20637 * 7 6 5 40 40 H 0.97004 * 120.00341 * 266.45678 * 10 8 7 41 41 H 0.97003 * 119.99490 * 4.91590 * 13 11 10 42 42 H 1.08001 * 119.78390 * 0.02562 * 15 14 13 43 43 H 1.08003 * 119.83575 * 180.23566 * 16 15 14 44 44 H 1.07997 * 120.05517 * 179.76615 * 17 16 15 45 45 H 0.97004 * 119.99879 * 179.97438 * 22 21 19 46 46 H 1.08001 * 120.16161 * 359.96363 * 27 14 13 47 47 H 1.08995 * 110.66689 * 278.15127 * 28 5 4 48 48 H 1.08995 * 110.66850 * 41.29249 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9784 0.5815 -1.2647 6 6 5.4547 0.5405 -1.3439 7 6 5.8339 0.7516 -2.8215 8 6 4.4894 0.9443 -3.5598 9 1 4.1544 0.0063 -4.0023 10 7 4.6048 1.9860 -4.5834 11 6 5.0417 1.6713 -5.8189 12 8 5.3396 0.5227 -6.0842 13 7 5.1474 2.6295 -6.7608 14 6 5.5019 2.2872 -8.0707 15 6 6.4147 1.2599 -8.2981 16 6 6.7688 0.9096 -9.5904 17 6 6.2298 1.5808 -10.6650 18 6 5.3104 2.6245 -10.4503 19 6 4.7521 3.3182 -11.5489 20 1 3.7369 3.6829 -11.4978 21 6 5.5152 3.5318 -12.7023 22 7 4.9488 4.0029 -13.7834 23 14 7.3426 3.1443 -12.6982 24 1 7.5489 1.7267 -13.0892 25 1 8.0387 4.0308 -13.6652 26 1 7.8929 3.3676 -11.3372 27 6 4.9499 2.9728 -9.1366 28 6 3.5329 1.3930 -2.4264 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6886 1.8463 -0.8899 33 1 1.6887 1.8463 0.8900 34 1 3.9785 2.1750 0.1044 35 1 3.8504 0.5555 0.8320 36 1 5.8815 1.3366 -0.7338 37 1 5.8184 -0.4273 -0.9987 38 1 6.4556 1.6404 -2.9293 39 1 6.3566 -0.1240 -3.2066 40 1 4.3669 2.9023 -4.3719 41 1 4.9778 3.5565 -6.5307 42 1 6.8457 0.7303 -7.4614 43 1 7.4746 0.1090 -9.7558 44 1 6.5119 1.3066 -11.6707 45 1 5.4779 4.1513 -14.5828 46 1 4.2449 3.7720 -8.9612 47 1 2.4987 1.1630 -2.6824 48 1 3.6522 2.4567 -2.2210 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455923773.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:41 Heat of formation + Delta-G solvation = -60.998392 kcal Electronic energy + Delta-G solvation = -27873.594644 eV Core-core repulsion = 23927.640395 eV Total energy + Delta-G solvation = -3945.954250 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.63278 -40.28228 -39.27278 -38.42058 -36.15864 -35.59347 -34.99070 -32.84385 -32.12514 -30.56909 -29.42484 -28.88571 -27.01149 -26.89392 -24.26455 -23.43353 -22.84777 -22.14365 -21.74945 -21.35888 -19.56369 -19.44377 -17.91893 -17.66006 -17.55120 -17.12476 -16.88374 -16.49146 -16.21135 -16.07583 -15.85954 -15.71253 -15.30907 -14.88073 -14.56882 -14.50498 -14.44005 -14.26639 -13.93069 -13.79355 -13.43811 -13.23010 -12.93801 -12.87787 -12.57495 -12.53908 -12.40184 -12.37352 -12.22597 -11.94479 -11.82585 -11.65265 -11.61352 -11.25883 -11.12272 -10.70465 -10.53629 -10.16398 -9.50974 -9.36621 -8.83864 -8.81470 -6.51474 0.70400 0.80063 1.30524 1.42369 1.51406 1.56968 2.10044 2.16651 2.67823 2.86083 2.99632 3.30179 3.47730 3.51734 3.74752 4.01673 4.14971 4.23850 4.24948 4.30075 4.32432 4.48176 4.52485 4.54693 4.56445 4.61116 4.63525 4.66127 4.83666 4.86707 4.89227 4.90969 4.95426 4.99313 5.00356 5.05713 5.15376 5.37128 5.43933 5.59415 5.67826 5.83056 5.87114 5.95337 5.99192 6.06355 6.27175 6.35833 6.42108 6.71412 6.85026 7.04852 7.54260 8.26429 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025759 B = 0.002004 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.726715 B =13970.179804 C =14585.896364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.058 3.942 4 C 0.049 3.951 5 N -0.524 5.524 6 C 0.044 3.956 7 C -0.139 4.139 8 C 0.161 3.839 9 H 0.071 0.929 10 N -0.718 5.718 11 C 0.701 3.299 12 O -0.611 6.611 13 N -0.672 5.672 14 C 0.190 3.810 15 C -0.221 4.221 16 C -0.075 4.075 17 C -0.256 4.256 18 C 0.087 3.913 19 C -0.482 4.482 20 H 0.058 0.942 21 C 0.045 3.955 22 N -0.861 5.861 23 Si 0.968 3.032 24 H -0.261 1.261 25 H -0.281 1.281 26 H -0.252 1.252 27 C -0.231 4.231 28 C 0.042 3.958 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.060 0.940 40 H 0.413 0.587 41 H 0.418 0.582 42 H 0.118 0.882 43 H 0.126 0.874 44 H 0.102 0.898 45 H 0.292 0.708 46 H 0.115 0.885 47 H 0.085 0.915 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.321 -0.282 29.680 29.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.325 6.325 3 C -0.019 4.019 4 C -0.079 4.079 5 N -0.249 5.249 6 C -0.083 4.083 7 C -0.179 4.179 8 C 0.055 3.945 9 H 0.090 0.910 10 N -0.374 5.374 11 C 0.402 3.598 12 O -0.490 6.490 13 N -0.321 5.321 14 C 0.095 3.905 15 C -0.242 4.242 16 C -0.093 4.093 17 C -0.275 4.275 18 C 0.084 3.916 19 C -0.513 4.513 20 H 0.076 0.924 21 C -0.168 4.168 22 N -0.488 5.488 23 Si 0.793 3.207 24 H -0.186 1.186 25 H -0.208 1.208 26 H -0.176 1.176 27 C -0.253 4.253 28 C -0.086 4.086 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.251 0.749 41 H 0.256 0.744 42 H 0.136 0.864 43 H 0.144 0.856 44 H 0.119 0.881 45 H 0.102 0.898 46 H 0.133 0.867 47 H 0.103 0.897 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.256 -1.894 29.266 29.414 hybrid contribution 0.246 1.666 -0.493 1.755 sum -2.009 -0.228 28.773 28.844 Atomic orbital electron populations 1.22849 0.80349 1.03311 1.00495 1.87963 1.20501 1.28524 1.95469 1.22728 0.93146 0.84841 1.01151 1.22408 0.93974 0.99235 0.92307 1.64720 1.09551 1.48447 1.02183 1.22814 0.87703 1.02485 0.95342 1.22786 0.97387 1.02600 0.95085 1.21594 0.95590 0.90600 0.86689 0.91033 1.44850 1.70796 1.12938 1.08864 1.16067 0.78364 0.84312 0.81096 1.90916 1.56793 1.20516 1.80747 1.42381 1.72164 1.10528 1.06997 1.17293 0.94346 0.96410 0.82447 1.20800 1.03638 1.03123 0.96647 1.20854 0.98176 0.98174 0.92121 1.21257 1.07114 1.01123 0.98026 1.17664 0.90826 0.90497 0.92641 1.19372 1.00696 1.33591 0.97636 0.92362 1.26750 1.04906 0.91754 0.93378 1.69675 1.40170 1.36416 1.02551 0.85488 0.77513 0.78410 0.79336 1.18641 1.20793 1.17574 1.20900 1.07741 1.05743 0.90963 1.23330 0.98906 0.96951 0.89433 0.93895 0.89431 0.92970 0.92808 0.91219 0.90935 0.89652 0.91687 0.90213 0.90368 0.92089 0.74945 0.74396 0.86374 0.85648 0.88061 0.89811 0.86657 0.89708 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.55 16 2 O -0.41 -6.97 10.66 -148.98 -1.59 -8.56 16 3 C 0.06 0.66 5.91 71.98 0.43 1.08 16 4 C 0.05 0.54 5.22 86.30 0.45 0.99 16 5 N -0.52 -8.13 5.31 -883.00 -4.69 -12.82 16 6 C 0.04 0.64 6.70 86.45 0.58 1.21 16 7 C -0.14 -2.55 6.67 31.47 0.21 -2.34 16 8 C 0.16 3.27 3.35 46.20 0.15 3.42 16 9 H 0.07 1.96 7.69 -2.39 -0.02 1.94 16 10 N -0.72 -14.60 5.15 -452.07 -2.33 -16.93 16 11 C 0.70 21.77 8.40 179.05 1.50 23.27 16 12 O -0.61 -24.70 13.53 -4.00 -0.05 -24.75 16 13 N -0.67 -20.80 5.34 -317.32 -1.69 -22.49 16 14 C 0.19 7.81 6.28 38.10 0.24 8.05 16 15 C -0.22 -9.61 8.70 22.58 0.20 -9.41 16 16 C -0.07 -3.29 10.02 22.20 0.22 -3.07 16 17 C -0.26 -12.47 7.04 22.75 0.16 -12.31 16 18 C 0.09 4.47 5.09 -21.31 -0.11 4.36 16 19 C -0.48 -27.20 9.60 23.46 0.23 -26.97 16 20 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 21 C 0.04 2.44 5.48 85.25 0.47 2.91 16 22 N -0.86 -47.91 13.93 21.82 0.30 -47.60 16 23 Si 0.97 43.71 24.43 68.60 1.68 45.39 16 24 H -0.26 -11.27 6.54 99.48 0.65 -10.62 16 25 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 26 H -0.25 -11.51 6.81 99.48 0.68 -10.83 16 27 C -0.23 -10.52 9.71 22.85 0.22 -10.30 16 28 C 0.04 0.60 4.94 86.65 0.43 1.03 16 29 H 0.04 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.05 0.56 6.60 -2.39 -0.02 0.55 16 33 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.07 0.50 7.97 -2.38 -0.02 0.48 16 35 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.06 0.68 7.67 -2.39 -0.02 0.67 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 1.33 8.05 -2.39 -0.02 1.31 16 39 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.41 5.26 8.54 -92.71 -0.79 4.47 16 41 H 0.42 9.46 8.84 -92.71 -0.82 8.64 16 42 H 0.12 5.11 6.25 -2.91 -0.02 5.09 16 43 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 44 H 0.10 4.91 4.49 -2.91 -0.01 4.90 16 45 H 0.29 14.66 8.30 -92.71 -0.77 13.89 16 46 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 47 H 0.08 1.33 7.52 -2.39 -0.02 1.31 16 48 H 0.07 0.70 7.89 -2.39 -0.02 0.68 16 Total: -1.00 -71.70 383.88 -2.46 -74.16 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: -0.71 Total: 30.13 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: 6.62 Total: -16.52 kcal Atomic # 7 Polarization: -91.44 SS G_CDS: -8.41 Total: -99.84 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -1.64 Total: -33.31 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.68 Total: 45.39 kcal Total: -71.70 -2.46 -74.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455923773.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.158 kcal (2) G-P(sol) polarization free energy of solvation -71.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds