Wall clock time and date at job start Tue Mar 31 2020 17:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42905 * 113.99760 * 2 1 4 4 C 1.52993 * 109.46893 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47257 * 64.84343 * 4 3 2 6 6 C 1.46901 * 110.99940 * 75.61001 * 5 4 3 7 7 C 1.53244 * 109.34071 * 187.25379 * 6 5 4 8 8 N 1.47079 * 108.52229 * 306.17124 * 7 6 5 9 9 C 1.34775 * 120.88273 * 231.18496 * 8 7 6 10 10 O 1.21580 * 119.99809 * 5.13801 * 9 8 7 11 11 N 1.34780 * 119.99969 * 185.13706 * 9 8 7 12 12 C 1.39958 * 119.99827 * 175.00369 * 11 9 8 13 13 C 1.39285 * 119.94595 * 145.72620 * 12 11 9 14 14 C 1.38486 * 120.42556 * 179.69829 * 13 12 11 15 15 C 1.37677 * 120.32601 * 0.02919 * 14 13 12 16 16 C 1.40741 * 119.88197 * 359.97438 * 15 14 13 17 17 C 1.41412 * 120.21134 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00212 * 213.68546 * 17 16 15 19 19 C 1.39933 * 119.99649 * 33.69074 * 17 16 15 20 20 N 1.30831 * 120.00339 * 5.96750 * 19 17 16 21 21 Si 1.86798 * 119.99979 * 185.97162 * 19 17 16 22 22 H 1.48504 * 109.46880 * 89.99550 * 21 19 17 23 23 H 1.48497 * 109.47238 * 209.99909 * 21 19 17 24 24 H 1.48497 * 109.47072 * 330.00293 * 21 19 17 25 25 C 1.38229 * 119.94283 * 325.45216 * 12 11 9 26 26 C 1.47085 * 118.23615 * 51.45426 * 8 7 6 27 27 C 1.46894 * 111.00159 * 199.91036 * 5 4 3 28 28 H 1.08997 * 109.46560 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47035 * 299.99948 * 1 2 3 30 30 H 1.09002 * 109.47002 * 59.99962 * 1 2 3 31 31 H 1.08999 * 109.47305 * 60.00173 * 3 2 1 32 32 H 1.09005 * 109.47240 * 300.00291 * 3 2 1 33 33 H 1.08998 * 109.47612 * 304.84316 * 4 3 2 34 34 H 1.09006 * 109.47094 * 184.83994 * 4 3 2 35 35 H 1.09005 * 109.49404 * 67.29784 * 6 5 4 36 36 H 1.09000 * 109.51532 * 307.23137 * 6 5 4 37 37 H 1.08994 * 109.62818 * 186.46282 * 7 6 5 38 38 H 1.08998 * 109.62655 * 65.87686 * 7 6 5 39 39 H 0.96998 * 120.00060 * 355.00153 * 11 9 8 40 40 H 1.08004 * 119.78197 * 359.72973 * 13 12 11 41 41 H 1.08008 * 119.83682 * 180.02562 * 14 13 12 42 42 H 1.07998 * 120.06001 * 179.97438 * 15 14 13 43 43 H 0.96990 * 120.00396 * 179.97438 * 20 19 17 44 44 H 1.07995 * 120.16529 * 0.27562 * 25 12 11 45 45 H 1.09004 * 109.62442 * 68.25287 * 26 8 7 46 46 H 1.08994 * 109.62708 * 188.83618 * 26 8 7 47 47 H 1.09003 * 109.49622 * 292.70541 * 27 5 4 48 48 H 1.09002 * 109.49369 * 52.78554 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9766 0.5594 -1.2546 6 6 3.9052 1.5113 -2.3711 7 6 4.1973 0.7766 -3.6839 8 7 5.4809 0.0713 -3.5490 9 6 6.4506 0.2167 -4.4736 10 8 6.3078 1.0089 -5.3848 11 7 7.5785 -0.5161 -4.3882 12 6 8.5392 -0.4427 -5.4033 13 6 9.8919 -0.5521 -5.0897 14 6 10.8506 -0.4871 -6.0869 15 6 10.4766 -0.3129 -7.4004 16 6 9.1135 -0.2007 -7.7324 17 6 8.7215 -0.0211 -9.0792 18 1 7.8529 0.5761 -9.3137 19 6 9.4593 -0.6173 -10.1080 20 7 10.4399 -1.4345 -9.8210 21 14 9.0441 -0.2464 -11.8910 22 1 9.8276 0.9297 -12.3473 23 1 9.3811 -1.4225 -12.7327 24 1 7.5937 0.0486 -12.0105 25 6 8.1438 -0.2675 -6.7162 26 6 5.6759 -0.8016 -2.3813 27 6 5.3278 -0.0001 -1.1169 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8465 -0.8900 33 1 3.8517 0.5706 0.8425 34 1 3.9785 2.1769 0.0861 35 1 4.6427 2.3004 -2.2241 36 1 2.9078 1.9489 -2.4133 37 1 4.2589 1.4961 -4.5003 38 1 3.4036 0.0571 -3.8852 39 1 7.7244 -1.0944 -3.6232 40 1 10.1949 -0.6890 -4.0621 41 1 11.8968 -0.5734 -5.8330 42 1 11.2278 -0.2624 -8.1747 43 1 10.9510 -1.8481 -10.5341 44 1 7.0952 -0.1826 -6.9604 45 1 5.0216 -1.6698 -2.4599 46 1 6.7155 -1.1258 -2.3362 47 1 6.0455 0.8100 -0.9874 48 1 5.3620 -0.6590 -0.2493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455925856.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:53 Heat of formation + Delta-G solvation = -26.472129 kcal Electronic energy + Delta-G solvation = -28426.616888 eV Core-core repulsion = 24482.159809 eV Total energy + Delta-G solvation = -3944.457079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.39647 -38.89166 -37.81468 -37.00926 -34.65213 -34.43079 -32.95275 -31.24371 -30.48933 -29.73180 -28.09308 -26.90128 -25.89462 -25.19925 -23.96025 -22.57261 -21.70380 -20.92655 -20.49176 -19.05127 -18.23959 -17.36504 -16.81826 -16.41506 -15.91025 -15.61401 -15.43778 -15.17371 -15.08179 -14.89469 -14.59318 -14.42101 -14.26022 -13.84215 -13.56799 -13.07605 -12.92874 -12.79320 -12.36414 -12.22517 -12.09582 -12.01527 -11.77099 -11.55368 -11.49488 -11.19445 -11.11509 -11.10194 -11.01552 -10.86568 -10.39419 -10.10981 -9.93420 -9.61083 -9.38565 -9.15914 -8.91796 -8.78481 -8.37171 -7.31270 -6.82159 -6.55111 -4.28718 2.72832 2.86369 3.01501 3.15491 3.19912 3.26447 3.45977 3.55882 3.75004 4.05269 4.17666 4.60387 4.64105 4.76367 4.78059 4.87814 4.94180 4.98149 5.04194 5.07974 5.09199 5.17557 5.25730 5.36649 5.38873 5.46142 5.48478 5.68862 5.72537 5.76299 5.95600 6.26511 6.41898 6.46907 6.63979 6.75614 6.84013 6.89176 6.95145 7.09587 7.16738 7.31279 7.38624 7.74252 7.84567 8.02885 8.19611 8.31055 8.44136 8.74778 8.96696 9.05395 9.08868 10.38319 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022067 B = 0.002248 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.557139 B =12452.060211 C =13325.136069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.375 6.375 3 C 0.067 3.933 4 C 0.056 3.944 5 N -0.528 5.528 6 C 0.040 3.960 7 C 0.137 3.863 8 N -0.636 5.636 9 C 0.703 3.297 10 O -0.566 6.566 11 N -0.681 5.681 12 C 0.163 3.837 13 C -0.254 4.254 14 C -0.097 4.097 15 C -0.160 4.160 16 C 0.120 3.880 17 C -0.462 4.462 18 H 0.076 0.924 19 C 0.072 3.928 20 N -0.811 5.811 21 Si 0.912 3.088 22 H -0.270 1.270 23 H -0.279 1.279 24 H -0.263 1.263 25 C -0.200 4.200 26 C 0.117 3.883 27 C 0.044 3.956 28 H 0.084 0.916 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.039 0.961 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.393 0.607 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.118 0.882 43 H 0.277 0.723 44 H 0.108 0.892 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.039 0.961 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.084 2.287 19.851 24.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.293 6.293 3 C -0.010 4.010 4 C -0.072 4.072 5 N -0.253 5.253 6 C -0.089 4.089 7 C 0.013 3.987 8 N -0.375 5.375 9 C 0.405 3.595 10 O -0.441 6.441 11 N -0.329 5.329 12 C 0.071 3.929 13 C -0.275 4.275 14 C -0.116 4.116 15 C -0.180 4.180 16 C 0.117 3.883 17 C -0.493 4.493 18 H 0.095 0.905 19 C -0.143 4.143 20 N -0.438 5.438 21 Si 0.737 3.263 22 H -0.195 1.195 23 H -0.204 1.204 24 H -0.187 1.187 25 C -0.221 4.221 26 C -0.007 4.007 27 C -0.085 4.085 28 H 0.103 0.897 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.228 0.772 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.136 0.864 43 H 0.088 0.912 44 H 0.126 0.874 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.057 0.943 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.252 2.167 18.941 23.803 hybrid contribution 0.248 0.611 -0.057 0.662 sum -14.004 2.778 18.884 23.674 Atomic orbital electron populations 1.22723 0.81609 1.02675 0.99581 1.87995 1.18939 1.27128 1.95234 1.22535 0.93390 0.85266 0.99795 1.22131 0.93864 0.98450 0.92801 1.61856 1.24417 1.35199 1.03854 1.22592 1.01370 0.93602 0.91326 1.21475 0.83839 0.96472 0.96865 1.47332 1.15639 1.50150 1.24414 1.15859 0.80071 0.81297 0.82249 1.90958 1.79374 1.38857 1.34910 1.42762 1.18984 1.46399 1.24791 1.17261 0.86589 1.02326 0.86727 1.20054 0.90965 1.19065 0.97440 1.20472 0.96576 1.00968 0.93550 1.21360 0.96739 1.05629 0.94274 1.17522 0.90793 0.87479 0.92521 1.19524 1.11139 1.28278 0.90394 0.90546 1.25844 0.93758 0.93330 1.01359 1.69780 1.16894 1.22444 1.34718 0.86257 0.79944 0.78564 0.81551 1.19493 1.20429 1.18750 1.21125 0.99115 1.11361 0.90524 1.21767 1.01258 0.93321 0.84320 1.22567 0.88962 0.98579 0.98389 0.89726 0.94549 0.94210 0.93216 0.93242 0.89878 0.93041 0.94273 0.89788 0.88393 0.91108 0.77160 0.89355 0.88988 0.86369 0.91219 0.87411 0.90436 0.90191 0.94318 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.37 -3.52 10.65 -35.23 -0.38 -3.90 16 3 C 0.07 0.49 6.13 37.15 0.23 0.72 16 4 C 0.06 0.42 5.39 -3.83 -0.02 0.40 16 5 N -0.53 -5.04 4.50 -234.02 -1.05 -6.09 16 6 C 0.04 0.40 5.45 -3.70 -0.02 0.38 16 7 C 0.14 1.74 6.61 -3.60 -0.02 1.72 16 8 N -0.64 -9.15 3.00 -177.91 -0.53 -9.68 16 9 C 0.70 13.51 8.04 -86.92 -0.70 12.81 16 10 O -0.57 -13.37 13.54 5.29 0.07 -13.30 16 11 N -0.68 -12.83 5.25 -14.27 -0.07 -12.91 16 12 C 0.16 3.81 6.25 -83.76 -0.52 3.29 16 13 C -0.25 -5.68 9.97 -39.10 -0.39 -6.07 16 14 C -0.10 -2.29 10.01 -39.70 -0.40 -2.69 16 15 C -0.16 -4.29 8.63 -38.84 -0.34 -4.62 16 16 C 0.12 3.38 5.51 -106.85 -0.59 2.79 16 17 C -0.46 -13.05 9.04 -37.74 -0.34 -13.39 16 18 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 19 C 0.07 1.90 5.31 -17.34 -0.09 1.81 16 20 N -0.81 -21.79 10.94 55.55 0.61 -21.18 16 21 Si 0.91 19.81 29.56 -169.99 -5.03 14.78 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 25 C -0.20 -5.34 8.40 -38.69 -0.32 -5.66 16 26 C 0.12 1.25 6.57 -3.36 -0.02 1.23 16 27 C 0.04 0.40 5.60 -3.46 -0.02 0.38 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.35 6.68 -51.93 -0.35 0.01 16 33 H 0.08 0.60 7.77 -51.93 -0.40 0.20 16 34 H 0.05 0.35 8.00 -51.93 -0.42 -0.07 16 35 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.72 6.61 -51.93 -0.34 0.37 16 37 H 0.10 1.41 7.04 -51.93 -0.37 1.05 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.39 5.86 6.35 -40.82 -0.26 5.60 16 40 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 41 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 42 H 0.12 3.25 6.43 -52.49 -0.34 2.91 16 43 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 44 H 0.11 3.00 6.47 -52.49 -0.34 2.66 16 45 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.08 0.76 5.73 -51.93 -0.30 0.47 16 47 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.09 0.65 7.90 -51.93 -0.41 0.24 16 LS Contribution 383.07 15.07 5.77 5.77 Total: -1.00 -33.22 383.07 -10.36 -43.59 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -7.29 Total: 8.52 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -2.46 Total: -5.59 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -1.06 Total: -49.87 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.30 Total: -17.20 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.78 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.22 -10.36 -43.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455925856.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.114 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds