Wall clock time and date at job start Tue Mar 31 2020 17:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42905 * 113.99760 * 2 1 4 4 C 1.52993 * 109.46893 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47257 * 64.84343 * 4 3 2 6 6 C 1.46901 * 110.99940 * 75.61001 * 5 4 3 7 7 C 1.53244 * 109.34071 * 187.25379 * 6 5 4 8 8 N 1.47079 * 108.52229 * 306.17124 * 7 6 5 9 9 C 1.34775 * 120.88273 * 231.18496 * 8 7 6 10 10 O 1.21580 * 119.99809 * 5.13801 * 9 8 7 11 11 N 1.34780 * 119.99969 * 185.13706 * 9 8 7 12 12 C 1.39958 * 119.99827 * 175.00369 * 11 9 8 13 13 C 1.39285 * 119.94595 * 145.72620 * 12 11 9 14 14 C 1.38486 * 120.42556 * 179.69829 * 13 12 11 15 15 C 1.37677 * 120.32601 * 0.02919 * 14 13 12 16 16 C 1.40741 * 119.88197 * 359.97438 * 15 14 13 17 17 C 1.41412 * 120.21134 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00212 * 213.68546 * 17 16 15 19 19 C 1.39933 * 119.99649 * 33.69074 * 17 16 15 20 20 N 1.30831 * 120.00339 * 5.96750 * 19 17 16 21 21 Si 1.86798 * 119.99979 * 185.97162 * 19 17 16 22 22 H 1.48504 * 109.46880 * 89.99550 * 21 19 17 23 23 H 1.48497 * 109.47238 * 209.99909 * 21 19 17 24 24 H 1.48497 * 109.47072 * 330.00293 * 21 19 17 25 25 C 1.38229 * 119.94283 * 325.45216 * 12 11 9 26 26 C 1.47085 * 118.23615 * 51.45426 * 8 7 6 27 27 C 1.46894 * 111.00159 * 199.91036 * 5 4 3 28 28 H 1.08997 * 109.46560 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47035 * 299.99948 * 1 2 3 30 30 H 1.09002 * 109.47002 * 59.99962 * 1 2 3 31 31 H 1.08999 * 109.47305 * 60.00173 * 3 2 1 32 32 H 1.09005 * 109.47240 * 300.00291 * 3 2 1 33 33 H 1.08998 * 109.47612 * 304.84316 * 4 3 2 34 34 H 1.09006 * 109.47094 * 184.83994 * 4 3 2 35 35 H 1.09005 * 109.49404 * 67.29784 * 6 5 4 36 36 H 1.09000 * 109.51532 * 307.23137 * 6 5 4 37 37 H 1.08994 * 109.62818 * 186.46282 * 7 6 5 38 38 H 1.08998 * 109.62655 * 65.87686 * 7 6 5 39 39 H 0.96998 * 120.00060 * 355.00153 * 11 9 8 40 40 H 1.08004 * 119.78197 * 359.72973 * 13 12 11 41 41 H 1.08008 * 119.83682 * 180.02562 * 14 13 12 42 42 H 1.07998 * 120.06001 * 179.97438 * 15 14 13 43 43 H 0.96990 * 120.00396 * 179.97438 * 20 19 17 44 44 H 1.07995 * 120.16529 * 0.27562 * 25 12 11 45 45 H 1.09004 * 109.62442 * 68.25287 * 26 8 7 46 46 H 1.08994 * 109.62708 * 188.83618 * 26 8 7 47 47 H 1.09003 * 109.49622 * 292.70541 * 27 5 4 48 48 H 1.09002 * 109.49369 * 52.78554 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9766 0.5594 -1.2546 6 6 3.9052 1.5113 -2.3711 7 6 4.1973 0.7766 -3.6839 8 7 5.4809 0.0713 -3.5490 9 6 6.4506 0.2167 -4.4736 10 8 6.3078 1.0089 -5.3848 11 7 7.5785 -0.5161 -4.3882 12 6 8.5392 -0.4427 -5.4033 13 6 9.8919 -0.5521 -5.0897 14 6 10.8506 -0.4871 -6.0869 15 6 10.4766 -0.3129 -7.4004 16 6 9.1135 -0.2007 -7.7324 17 6 8.7215 -0.0211 -9.0792 18 1 7.8529 0.5761 -9.3137 19 6 9.4593 -0.6173 -10.1080 20 7 10.4399 -1.4345 -9.8210 21 14 9.0441 -0.2464 -11.8910 22 1 9.8276 0.9297 -12.3473 23 1 9.3811 -1.4225 -12.7327 24 1 7.5937 0.0486 -12.0105 25 6 8.1438 -0.2675 -6.7162 26 6 5.6759 -0.8016 -2.3813 27 6 5.3278 -0.0001 -1.1169 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8465 -0.8900 33 1 3.8517 0.5706 0.8425 34 1 3.9785 2.1769 0.0861 35 1 4.6427 2.3004 -2.2241 36 1 2.9078 1.9489 -2.4133 37 1 4.2589 1.4961 -4.5003 38 1 3.4036 0.0571 -3.8852 39 1 7.7244 -1.0944 -3.6232 40 1 10.1949 -0.6890 -4.0621 41 1 11.8968 -0.5734 -5.8330 42 1 11.2278 -0.2624 -8.1747 43 1 10.9510 -1.8481 -10.5341 44 1 7.0952 -0.1826 -6.9604 45 1 5.0216 -1.6698 -2.4599 46 1 6.7155 -1.1258 -2.3362 47 1 6.0455 0.8100 -0.9874 48 1 5.3620 -0.6590 -0.2493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455925856.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:51 Heat of formation + Delta-G solvation = -49.177769 kcal Electronic energy + Delta-G solvation = -28427.601479 eV Core-core repulsion = 24482.159809 eV Total energy + Delta-G solvation = -3945.441669 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.76846 -39.94961 -39.03091 -38.24470 -36.22913 -35.76628 -34.76465 -32.19181 -31.71533 -31.33044 -29.71439 -27.74284 -27.21613 -26.60306 -24.92676 -23.66346 -22.86357 -22.73320 -21.84221 -20.43023 -19.76227 -18.98012 -17.56336 -17.38418 -17.20990 -17.01929 -16.60991 -16.41107 -16.30395 -16.07935 -15.84544 -15.48088 -15.43066 -14.97873 -14.95752 -14.67127 -14.37481 -13.94459 -13.78406 -13.52076 -13.15340 -12.96833 -12.90656 -12.85343 -12.80248 -12.71182 -12.42824 -12.30844 -12.17264 -12.07992 -11.95598 -11.68479 -11.50233 -11.21647 -11.02724 -10.75722 -10.48441 -9.85283 -9.31446 -9.25860 -8.70133 -8.50736 -6.38752 0.92275 1.01761 1.36316 1.46476 1.51087 1.56810 2.13675 2.23549 2.77749 2.82242 2.89144 3.00308 3.70099 3.81404 3.93460 3.97288 4.16926 4.19864 4.31670 4.36515 4.43941 4.47673 4.52501 4.58517 4.60233 4.61822 4.67047 4.72988 4.80220 4.81929 4.93166 4.94488 5.01954 5.05032 5.11231 5.13759 5.14059 5.33497 5.46960 5.69154 5.83106 5.95675 6.00991 6.05819 6.10339 6.15364 6.38839 6.40128 6.70608 6.91887 6.96695 7.02383 7.53775 8.42425 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022067 B = 0.002248 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.557139 B =12452.060211 C =13325.136069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.065 3.935 4 C 0.056 3.944 5 N -0.537 5.537 6 C 0.052 3.948 7 C 0.133 3.867 8 N -0.626 5.626 9 C 0.697 3.303 10 O -0.618 6.618 11 N -0.670 5.670 12 C 0.170 3.830 13 C -0.240 4.240 14 C -0.093 4.093 15 C -0.184 4.184 16 C 0.088 3.912 17 C -0.506 4.506 18 H 0.059 0.941 19 C 0.033 3.967 20 N -0.837 5.837 21 Si 0.984 3.016 22 H -0.260 1.260 23 H -0.262 1.262 24 H -0.267 1.267 25 C -0.226 4.226 26 C 0.111 3.889 27 C 0.049 3.951 28 H 0.088 0.912 29 H 0.049 0.951 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.030 0.970 36 H 0.101 0.899 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.414 0.586 40 H 0.134 0.866 41 H 0.127 0.873 42 H 0.103 0.897 43 H 0.286 0.714 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.035 0.965 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.157 1.745 22.423 26.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.012 4.012 4 C -0.071 4.071 5 N -0.262 5.262 6 C -0.077 4.077 7 C 0.010 3.990 8 N -0.364 5.364 9 C 0.399 3.601 10 O -0.498 6.498 11 N -0.320 5.320 12 C 0.076 3.924 13 C -0.261 4.261 14 C -0.112 4.112 15 C -0.204 4.204 16 C 0.085 3.915 17 C -0.537 4.537 18 H 0.077 0.923 19 C -0.180 4.180 20 N -0.464 5.464 21 Si 0.805 3.195 22 H -0.184 1.184 23 H -0.187 1.187 24 H -0.192 1.192 25 C -0.248 4.248 26 C -0.011 4.011 27 C -0.080 4.080 28 H 0.106 0.894 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.048 0.952 36 H 0.119 0.881 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.254 0.746 40 H 0.152 0.848 41 H 0.145 0.855 42 H 0.121 0.879 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.105 0.895 46 H 0.112 0.888 47 H 0.053 0.947 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.352 1.593 21.612 25.992 hybrid contribution 0.196 0.753 -0.644 1.010 sum -14.156 2.346 20.968 25.408 Atomic orbital electron populations 1.22834 0.80486 1.03247 1.00346 1.87944 1.20330 1.28330 1.95430 1.22624 0.93114 0.84776 1.00646 1.22199 0.94128 0.98999 0.91823 1.61869 1.24621 1.35214 1.04497 1.22439 1.02017 0.93033 0.90194 1.21586 0.83163 0.96323 0.97937 1.47396 1.14741 1.50010 1.24227 1.16091 0.80680 0.80865 0.82434 1.90931 1.80414 1.41083 1.37330 1.42512 1.18267 1.46758 1.24473 1.17329 0.88167 1.00380 0.86488 1.20495 0.89893 1.16362 0.99344 1.20860 0.98785 0.99120 0.92420 1.21307 0.95697 1.07802 0.95609 1.17850 0.91978 0.88567 0.93095 1.19663 1.11956 1.30249 0.91821 0.92251 1.26655 0.93315 0.92529 1.05476 1.69824 1.17449 1.22700 1.36434 0.85181 0.79377 0.79091 0.75832 1.18418 1.18660 1.19164 1.21046 0.97680 1.13700 0.92381 1.22088 1.02482 0.93190 0.83378 1.22567 0.88694 0.98645 0.98096 0.89357 0.93204 0.93996 0.91428 0.93303 0.89114 0.92016 0.95159 0.88076 0.90843 0.90395 0.74580 0.84791 0.85525 0.87898 0.90327 0.89997 0.89536 0.88805 0.94718 0.87029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.40 -6.72 10.65 -148.98 -1.59 -8.30 16 3 C 0.07 0.80 6.13 71.98 0.44 1.24 16 4 C 0.06 0.69 5.39 86.30 0.47 1.16 16 5 N -0.54 -8.94 4.50 -894.30 -4.03 -12.97 16 6 C 0.05 0.98 5.45 86.38 0.47 1.46 16 7 C 0.13 3.38 6.61 86.35 0.57 3.96 16 8 N -0.63 -17.62 3.00 -835.04 -2.51 -20.13 16 9 C 0.70 27.06 8.04 179.05 1.44 28.50 16 10 O -0.62 -30.71 13.54 -3.97 -0.05 -30.76 16 11 N -0.67 -24.60 5.25 -317.33 -1.67 -26.26 16 12 C 0.17 7.92 6.25 38.09 0.24 8.16 16 13 C -0.24 -10.17 9.97 22.58 0.23 -9.94 16 14 C -0.09 -4.29 10.01 22.20 0.22 -4.06 16 15 C -0.18 -10.11 8.63 22.75 0.20 -9.91 16 16 C 0.09 5.20 5.51 -21.30 -0.12 5.08 16 17 C -0.51 -30.34 9.04 23.46 0.21 -30.13 16 18 H 0.06 3.59 7.85 -2.91 -0.02 3.57 16 19 C 0.03 1.79 5.31 85.25 0.45 2.24 16 20 N -0.84 -46.11 10.94 21.82 0.24 -45.87 16 21 Si 0.98 41.71 29.56 68.60 2.03 43.74 16 22 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 23 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 C -0.23 -12.68 8.40 22.85 0.19 -12.49 16 26 C 0.11 2.10 6.57 86.50 0.57 2.67 16 27 C 0.05 0.75 5.60 86.54 0.49 1.23 16 28 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.40 16 30 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.59 6.68 -2.38 -0.02 0.58 16 33 H 0.09 1.01 7.77 -2.39 -0.02 0.99 16 34 H 0.06 0.66 8.00 -2.38 -0.02 0.64 16 35 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.10 1.57 6.61 -2.39 -0.02 1.55 16 37 H 0.07 2.24 7.04 -2.39 -0.02 2.22 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.41 11.28 6.35 -92.71 -0.59 10.69 16 40 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 41 H 0.13 4.89 8.06 -2.91 -0.02 4.87 16 42 H 0.10 5.86 6.43 -2.91 -0.02 5.84 16 43 H 0.29 14.21 8.30 -92.72 -0.77 13.44 16 44 H 0.08 4.92 6.47 -2.91 -0.02 4.90 16 45 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.09 1.50 5.73 -2.39 -0.01 1.48 16 47 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.11 1.22 7.90 -2.39 -0.02 1.20 16 Total: -1.00 -76.79 383.07 0.12 -76.67 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: 0.38 Total: 33.16 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 7.31 Total: -9.29 kcal Atomic # 7 Polarization: -97.27 SS G_CDS: -7.96 Total: -105.23 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -1.64 Total: -39.06 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -76.79 0.12 -76.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455925856.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.496 kcal (2) G-P(sol) polarization free energy of solvation -76.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds