Wall clock time and date at job start Tue Mar 31 2020 17:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35677 * 116.99903 * 2 1 4 4 C 1.38921 * 119.68539 * 180.02562 * 3 2 1 5 5 C 1.38367 * 119.11215 * 179.97438 * 4 3 2 6 6 C 1.38834 * 118.49049 * 359.73108 * 5 4 3 7 7 C 1.38053 * 119.28171 * 0.53288 * 6 5 4 8 8 C 1.50697 * 119.58052 * 179.73538 * 7 6 5 9 9 C 1.52995 * 109.47374 * 124.72726 * 8 7 6 10 10 N 1.46507 * 109.47338 * 179.97438 * 9 8 7 11 11 C 1.34771 * 120.00217 * 179.97438 * 10 9 8 12 12 O 1.21585 * 120.00071 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00113 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99967 * 180.02562 * 13 11 10 15 15 H 1.08999 * 110.43523 * 323.90954 * 14 13 11 16 16 C 1.54269 * 110.48717 * 86.45357 * 14 13 11 17 17 C 1.53875 * 106.59675 * 142.41716 * 16 14 13 18 18 C 1.54268 * 106.59807 * 0.02562 * 17 16 14 19 19 H 1.09007 * 110.48686 * 95.20051 * 18 17 16 20 20 C 1.50706 * 110.48318 * 217.70664 * 18 17 16 21 21 H 1.08005 * 119.99758 * 116.75944 * 20 18 17 22 22 C 1.37871 * 120.00102 * 296.75829 * 20 18 17 23 23 N 1.31516 * 120.00217 * 0.02562 * 22 20 18 24 24 Si 1.86800 * 119.99766 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47483 * 269.99808 * 24 22 20 26 26 H 1.48499 * 109.47134 * 30.00322 * 24 22 20 27 27 H 1.48507 * 109.46904 * 150.00145 * 24 22 20 28 28 C 1.54880 * 104.31309 * 336.45201 * 18 17 16 29 29 N 1.31960 * 120.83631 * 359.45306 * 7 6 5 30 30 H 1.09003 * 109.47111 * 60.00495 * 1 2 3 31 31 H 1.09002 * 109.46965 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47764 * 300.00380 * 1 2 3 33 33 H 1.07998 * 120.44291 * 359.97438 * 4 3 2 34 34 H 1.08004 * 120.76131 * 180.02562 * 5 4 3 35 35 H 1.07997 * 120.35999 * 180.26099 * 6 5 4 36 36 H 1.09002 * 109.47475 * 4.72336 * 8 7 6 37 37 H 1.09008 * 109.46823 * 244.72658 * 8 7 6 38 38 H 1.08998 * 109.47280 * 59.99895 * 9 8 7 39 39 H 1.08995 * 109.47172 * 299.99552 * 9 8 7 40 40 H 0.96999 * 119.99544 * 359.97438 * 10 9 8 41 41 H 0.96999 * 119.99649 * 359.97438 * 13 11 10 42 42 H 1.08999 * 110.03179 * 23.13990 * 16 14 13 43 43 H 1.08992 * 110.02965 * 261.70462 * 16 14 13 44 44 H 1.08994 * 110.03659 * 240.71557 * 17 16 14 45 45 H 1.09004 * 110.03240 * 119.28738 * 17 16 14 46 46 H 0.97001 * 119.99646 * 359.97438 * 23 22 20 47 47 H 1.09002 * 110.75807 * 156.19232 * 28 18 17 48 48 H 1.08998 * 110.75950 * 279.56218 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0484 2.5131 -0.0011 6 6 3.2504 3.6492 -0.0068 7 6 1.8770 3.5097 -0.0005 8 6 1.0044 4.7384 -0.0006 9 6 0.0341 4.6748 -1.1818 10 7 -0.8146 5.8690 -1.1815 11 6 -1.7507 6.0307 -2.1375 12 8 -1.8912 5.1853 -2.9999 13 7 -2.5318 7.1291 -2.1369 14 6 -3.5497 7.3046 -3.1758 15 1 -3.1913 6.9163 -4.1291 16 6 -4.8634 6.6064 -2.7679 17 6 -6.0104 7.5107 -3.2519 18 6 -5.3536 8.7266 -3.9376 19 1 -5.2891 8.5686 -5.0142 20 6 -6.1276 9.9840 -3.6358 21 1 -5.6614 10.7851 -3.0814 22 6 -7.4308 10.1117 -4.0674 23 7 -7.9987 9.1360 -4.7421 24 14 -8.3903 11.6700 -3.6927 25 1 -9.0969 11.5165 -2.3956 26 1 -7.4547 12.8204 -3.6137 27 1 -9.3823 11.9118 -4.7711 28 6 -3.9376 8.7989 -3.3144 29 7 1.3185 2.3141 0.0000 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 4.0228 0.3696 -0.0005 34 1 5.1253 2.5948 -0.0019 35 1 3.6992 4.6315 -0.0116 36 1 1.6287 5.6274 -0.0906 37 1 0.4403 4.7834 0.9311 38 1 -0.5902 3.7858 -1.0917 39 1 0.5982 4.6298 -2.1133 40 1 -0.7027 6.5432 -0.4932 41 1 -2.4204 7.8030 -1.4482 42 1 -4.9068 6.4961 -1.6843 43 1 -4.9310 5.6293 -3.2461 44 1 -6.6105 7.8392 -2.4033 45 1 -6.6348 6.9724 -3.9650 46 1 -7.5005 8.3266 -4.9363 47 1 -3.2487 9.3190 -3.9800 48 1 -3.9697 9.2805 -2.3371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458519283.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:11 Heat of formation + Delta-G solvation = -51.558346 kcal Electronic energy + Delta-G solvation = -27435.929182 eV Core-core repulsion = 23490.384283 eV Total energy + Delta-G solvation = -3945.544899 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.08272 -39.88691 -38.45796 -37.45310 -35.49885 -33.87766 -33.20706 -32.25227 -31.70000 -29.39908 -28.14315 -27.51991 -26.57772 -24.32363 -23.60584 -23.36322 -21.97302 -20.99523 -20.06406 -19.17252 -18.60593 -18.12825 -17.05230 -16.92722 -16.42850 -16.40729 -16.07404 -15.63154 -15.15778 -14.68823 -14.56823 -14.29998 -14.06598 -13.95981 -13.73543 -13.60060 -13.31060 -12.83431 -12.58301 -12.50835 -12.27479 -12.07665 -12.01473 -11.81234 -11.39557 -11.05656 -10.94330 -10.66380 -10.63840 -10.28613 -10.13645 -10.07379 -10.03128 -9.91289 -9.78578 -9.34513 -9.14975 -8.85123 -8.56202 -8.40646 -8.31146 -6.29851 -4.02506 0.68282 0.87263 2.72167 2.79642 3.32764 3.40739 3.44086 3.47402 3.63037 3.71656 4.20890 4.45315 4.55281 4.57353 4.67640 4.74218 4.81066 4.82511 4.98492 5.04030 5.07695 5.30772 5.35873 5.36491 5.44620 5.52232 5.60525 5.67224 5.74243 5.77201 5.80754 5.99555 6.21929 6.27558 6.41804 6.43655 6.57032 6.63503 6.75593 6.84909 6.86026 6.97099 7.08946 7.22872 7.38493 7.46343 7.69741 8.18512 8.27282 8.46929 8.79359 8.92616 9.69825 11.08367 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.028676 B = 0.001729 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.179340 B =16189.644068 C =16816.458731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.309 6.309 3 C 0.326 3.674 4 C -0.196 4.196 5 C -0.039 4.039 6 C -0.206 4.206 7 C 0.176 3.824 8 C -0.082 4.082 9 C 0.150 3.850 10 N -0.753 5.753 11 C 0.702 3.298 12 O -0.592 6.592 13 N -0.734 5.734 14 C 0.154 3.846 15 H 0.083 0.917 16 C -0.131 4.131 17 C -0.112 4.112 18 C 0.035 3.965 19 H 0.023 0.977 20 C -0.594 4.594 21 H 0.049 0.951 22 C 0.018 3.982 23 N -0.913 5.913 24 Si 1.069 2.931 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.285 1.285 28 C -0.111 4.111 29 N -0.534 5.534 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.394 0.606 41 H 0.393 0.607 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.058 0.942 45 H 0.048 0.952 46 H 0.273 0.727 47 H 0.054 0.946 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.449 -12.914 13.678 30.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.216 6.216 3 C 0.147 3.853 4 C -0.216 4.216 5 C -0.064 4.064 6 C -0.226 4.226 7 C 0.039 3.961 8 C -0.120 4.120 9 C 0.025 3.975 10 N -0.410 5.410 11 C 0.401 3.599 12 O -0.470 6.470 13 N -0.388 5.388 14 C 0.050 3.950 15 H 0.102 0.898 16 C -0.170 4.170 17 C -0.151 4.151 18 C 0.016 3.984 19 H 0.041 0.959 20 C -0.632 4.632 21 H 0.067 0.933 22 C -0.186 4.186 23 N -0.550 5.550 24 Si 0.898 3.102 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.211 1.211 28 C -0.149 4.149 29 N -0.258 5.258 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.156 0.844 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.227 0.773 41 H 0.226 0.774 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 22.022 -13.340 12.631 28.679 hybrid contribution 2.258 -0.074 0.977 2.461 sum 24.280 -13.414 13.609 30.897 Atomic orbital electron populations 1.22906 0.76742 1.03145 1.02843 1.86237 1.23298 1.24421 1.87622 1.19826 0.89371 0.84620 0.91523 1.21080 0.92066 0.99741 1.08761 1.21407 1.00635 0.91164 0.93181 1.21829 0.93862 1.00158 1.06798 1.20598 0.91648 0.91254 0.92646 1.20765 0.97207 0.93864 1.00184 1.20972 0.91620 0.87816 0.97102 1.45095 1.39009 1.25115 1.31786 1.15993 0.79160 0.82758 0.81960 1.90916 1.72873 1.43831 1.39372 1.45378 1.38236 1.22240 1.32906 1.21947 0.86046 0.97427 0.89609 0.89845 1.22567 0.95460 0.98927 1.00051 1.22359 0.95996 0.96538 1.00192 1.19563 0.89929 0.94265 0.94684 0.95880 1.21968 0.99879 1.01865 1.39503 0.93297 1.25766 0.95721 1.03064 0.94067 1.70750 1.40286 1.07052 1.36892 0.83543 0.75605 0.74657 0.76403 1.21598 1.21598 1.21079 1.22748 0.99271 0.92010 1.00875 1.67074 1.41040 0.98362 1.19326 0.91899 0.88504 0.92187 0.84103 0.83975 0.84350 0.89206 0.89015 0.90704 0.91888 0.77276 0.77380 0.92844 0.92815 0.92311 0.93325 0.91476 0.92720 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.38 101.05 1.05 1.36 16 2 O -0.31 -3.08 10.48 -18.73 -0.20 -3.28 16 3 C 0.33 3.27 7.49 -17.12 -0.13 3.15 16 4 C -0.20 -1.51 10.04 -39.28 -0.39 -1.90 16 5 C -0.04 -0.23 10.17 -39.31 -0.40 -0.63 16 6 C -0.21 -1.37 9.71 -39.43 -0.38 -1.75 16 7 C 0.18 1.50 6.18 -82.61 -0.51 0.99 16 8 C -0.08 -0.57 5.73 -27.89 -0.16 -0.73 16 9 C 0.15 1.58 5.53 -4.04 -0.02 1.55 16 10 N -0.75 -8.27 5.56 -65.23 -0.36 -8.64 16 11 C 0.70 11.05 8.56 -86.92 -0.74 10.31 16 12 O -0.59 -12.03 16.05 5.29 0.08 -11.95 16 13 N -0.73 -11.00 5.12 -56.99 -0.29 -11.30 16 14 C 0.15 2.84 3.15 -66.21 -0.21 2.64 16 15 H 0.08 1.68 7.66 -51.93 -0.40 1.28 16 16 C -0.13 -2.59 6.53 -25.61 -0.17 -2.75 16 17 C -0.11 -2.59 5.37 -25.61 -0.14 -2.73 16 18 C 0.03 0.85 2.41 -90.11 -0.22 0.63 16 19 H 0.02 0.61 8.00 -51.93 -0.42 0.20 16 20 C -0.59 -16.26 8.38 -34.44 -0.29 -16.55 16 21 H 0.05 1.32 7.77 -52.48 -0.41 0.92 16 22 C 0.02 0.52 5.34 -17.82 -0.10 0.42 16 23 N -0.91 -27.30 13.44 55.43 0.74 -26.55 16 24 Si 1.07 24.95 29.90 -169.99 -5.08 19.87 16 25 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 26 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 28 C -0.11 -2.20 5.90 -24.68 -0.15 -2.35 16 29 N -0.53 -5.57 8.73 -9.55 -0.08 -5.65 16 30 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 31 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.49 8.10 -51.93 -0.42 0.06 16 33 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.14 0.44 8.06 -52.48 -0.42 0.01 16 35 H 0.14 0.58 7.94 -52.49 -0.42 0.16 16 36 H 0.09 0.42 7.86 -51.93 -0.41 0.02 16 37 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 38 H 0.07 0.96 7.94 -51.93 -0.41 0.54 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.39 2.98 8.49 -40.82 -0.35 2.63 16 41 H 0.39 4.71 8.56 -40.82 -0.35 4.36 16 42 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 43 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.06 1.44 7.83 -51.93 -0.41 1.04 16 45 H 0.05 1.17 6.91 -51.93 -0.36 0.81 16 46 H 0.27 8.09 5.54 -40.82 -0.23 7.87 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.06 1.20 7.94 -51.93 -0.41 0.79 16 LS Contribution 394.99 15.07 5.95 5.95 Total: -1.00 -34.87 394.99 -9.76 -44.63 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.57 Total: 5.27 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -2.95 Total: -8.36 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 0.01 Total: -52.14 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.11 Total: -15.23 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.87 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.87 -9.76 -44.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458519283.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.931 kcal (2) G-P(sol) polarization free energy of solvation -34.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds