Wall clock time and date at job start Tue Mar 31 2020 17:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99930 * 2 1 4 4 C 1.52997 * 109.47078 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47034 * 180.02562 * 4 3 2 6 6 C 1.38847 * 120.75593 * 89.99618 * 5 4 3 7 7 C 1.38061 * 119.31615 * 179.72518 * 6 5 4 8 8 N 1.31951 * 120.84665 * 0.02562 * 7 6 5 9 9 C 1.32353 * 121.63301 * 359.97438 * 8 7 6 10 10 N 1.39391 * 119.69036 * 179.97438 * 9 8 7 11 11 C 1.34782 * 119.99716 * 158.51857 * 10 9 8 12 12 O 1.21587 * 119.99506 * 4.75892 * 11 10 9 13 13 N 1.34774 * 120.00399 * 184.75157 * 11 10 9 14 14 C 1.46922 * 120.63063 * 185.38764 * 13 11 10 15 15 C 1.52767 * 109.00306 * 233.58213 * 14 13 11 16 16 C 1.53040 * 109.38169 * 305.58646 * 15 14 13 17 17 C 1.50698 * 109.44560 * 181.25492 * 16 15 14 18 18 H 1.08003 * 120.00384 * 239.93807 * 17 16 15 19 19 C 1.37881 * 120.00202 * 59.94268 * 17 16 15 20 20 N 1.31514 * 119.99930 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00142 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47023 * 90.00000 * 21 19 17 23 23 H 1.48500 * 109.46935 * 209.99696 * 21 19 17 24 24 H 1.48493 * 109.46901 * 329.99449 * 21 19 17 25 25 C 1.53035 * 109.53692 * 61.24403 * 16 15 14 26 26 C 1.46931 * 120.62563 * 5.66054 * 13 11 10 27 27 C 1.38355 * 120.74992 * 269.71453 * 5 4 3 28 28 H 1.08999 * 109.47116 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46802 * 299.99649 * 1 2 3 30 30 H 1.08995 * 109.47193 * 59.99650 * 1 2 3 31 31 H 1.09001 * 109.46902 * 60.00005 * 3 2 1 32 32 H 1.09002 * 109.47088 * 300.00417 * 3 2 1 33 33 H 1.08990 * 109.47242 * 59.99766 * 4 3 2 34 34 H 1.09002 * 109.47080 * 299.99905 * 4 3 2 35 35 H 1.08000 * 120.34152 * 359.70655 * 6 5 4 36 36 H 1.07997 * 119.57616 * 180.02562 * 7 6 5 37 37 H 0.96995 * 120.00640 * 338.52306 * 10 9 8 38 38 H 1.08995 * 109.58895 * 353.41423 * 14 13 11 39 39 H 1.09002 * 109.58835 * 113.84807 * 14 13 11 40 40 H 1.08997 * 109.56046 * 185.55442 * 15 14 13 41 41 H 1.08996 * 109.38734 * 65.51615 * 15 14 13 42 42 H 1.08992 * 109.46127 * 301.21780 * 16 15 14 43 43 H 0.96998 * 119.99951 * 180.02562 * 20 19 17 44 44 H 1.09010 * 109.49568 * 178.68063 * 25 16 15 45 45 H 1.09001 * 109.52878 * 58.60287 * 25 16 15 46 46 H 1.08996 * 109.58936 * 246.15405 * 26 13 11 47 47 H 1.08995 * 109.58674 * 6.44208 * 26 13 11 48 48 H 1.07996 * 120.44969 * 0.25598 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1484 2.5613 0.0000 6 6 4.4375 3.2093 1.1935 7 6 5.0041 4.4678 1.1594 8 7 5.2718 5.0584 0.0101 9 6 5.0110 4.4735 -1.1482 10 7 5.3099 5.1348 -2.3383 11 6 5.4651 4.4330 -3.4785 12 8 5.2597 3.2346 -3.4874 13 7 5.8479 5.0595 -4.6087 14 6 5.9077 4.3326 -5.8840 15 6 7.2959 4.5140 -6.4954 16 6 7.6103 6.0076 -6.6074 17 6 8.9666 6.1888 -7.2387 18 1 9.7493 6.7014 -6.6992 19 6 9.2084 5.7002 -8.5052 20 7 8.2555 5.0756 -9.1621 21 14 10.8899 5.9243 -9.2875 22 1 11.7534 4.7657 -8.9451 23 1 10.7419 6.0125 -10.7625 24 1 11.5110 7.1727 -8.7768 25 6 7.6090 6.6368 -5.2125 26 6 6.2191 6.4810 -4.5875 27 6 4.4410 3.2059 -1.1887 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8567 0.6439 -0.8908 34 1 3.8574 0.6436 0.8891 35 1 4.2212 2.7338 2.1387 36 1 5.2311 4.9755 2.0852 37 1 5.4064 6.0999 -2.3459 38 1 5.7225 3.2727 -5.7096 39 1 5.1562 4.7296 -6.5665 40 1 7.3199 4.0618 -7.4869 41 1 8.0377 4.0329 -5.8580 42 1 6.8545 6.4924 -7.2252 43 1 8.4258 4.7316 -10.0529 44 1 7.8560 7.6957 -5.2908 45 1 8.3477 6.1364 -4.5863 46 1 5.4935 7.0567 -5.1621 47 1 6.2367 6.8388 -3.5581 48 1 4.2296 2.7310 -2.1353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548767682.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:35 Heat of formation + Delta-G solvation = -47.494241 kcal Electronic energy + Delta-G solvation = -28396.985449 eV Core-core repulsion = 24451.616783 eV Total energy + Delta-G solvation = -3945.368666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.24345 -40.80956 -38.95738 -38.64007 -36.35884 -35.44224 -34.98938 -33.03855 -31.94629 -30.79623 -30.68240 -28.03774 -27.35587 -25.31467 -24.89997 -24.46592 -23.78194 -22.51984 -21.76259 -20.55260 -19.46042 -18.44905 -18.36609 -17.51016 -17.44007 -17.02380 -16.84125 -16.67645 -16.46959 -16.13461 -15.97278 -15.45416 -15.06193 -14.99533 -14.89893 -14.55806 -14.31565 -14.14506 -13.99039 -13.72391 -13.45902 -13.10932 -13.05594 -13.03240 -12.81856 -12.49476 -12.25148 -12.18348 -12.16675 -11.96453 -11.80201 -11.44263 -11.19105 -10.96432 -10.82392 -10.66288 -10.54859 -10.47435 -10.41244 -9.76712 -9.21496 -8.08377 -6.21542 0.14149 0.26871 1.27379 1.40590 1.42774 1.51301 1.87811 2.43382 2.58000 2.69593 2.95774 3.18616 3.63015 3.81452 3.86140 3.98673 4.11772 4.13895 4.22185 4.26232 4.29592 4.35753 4.45760 4.46983 4.52354 4.53686 4.55686 4.69861 4.80241 4.82265 4.84300 4.88898 4.93354 4.95600 5.02895 5.14327 5.19143 5.27246 5.40077 5.41929 5.50249 5.62384 5.79430 5.88488 5.98273 6.10607 6.17214 6.38171 6.59673 6.89346 7.04456 7.26772 7.46417 8.95126 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018880 B = 0.002301 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.732838 B =12168.343013 C =13075.462045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.072 3.928 4 C -0.075 4.075 5 C -0.025 4.025 6 C -0.186 4.186 7 C 0.124 3.876 8 N -0.534 5.534 9 C 0.352 3.648 10 N -0.659 5.659 11 C 0.709 3.291 12 O -0.603 6.603 13 N -0.610 5.610 14 C 0.138 3.862 15 C -0.113 4.113 16 C 0.045 3.955 17 C -0.532 4.532 18 H 0.051 0.949 19 C 0.014 3.986 20 N -0.914 5.914 21 Si 0.949 3.051 22 H -0.281 1.281 23 H -0.284 1.284 24 H -0.268 1.268 25 C -0.116 4.116 26 C 0.112 3.888 27 C -0.204 4.204 28 H 0.098 0.902 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.171 0.829 36 H 0.196 0.804 37 H 0.420 0.580 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.019 0.981 42 H 0.009 0.991 43 H 0.261 0.739 44 H 0.076 0.924 45 H 0.042 0.958 46 H 0.086 0.914 47 H 0.097 0.903 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.170 -2.479 22.067 26.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C -0.005 4.005 4 C -0.112 4.112 5 C -0.033 4.033 6 C -0.206 4.206 7 C -0.033 4.033 8 N -0.250 5.250 9 C 0.123 3.877 10 N -0.310 5.310 11 C 0.410 3.590 12 O -0.484 6.484 13 N -0.345 5.345 14 C 0.016 3.984 15 C -0.152 4.152 16 C 0.027 3.973 17 C -0.570 4.570 18 H 0.069 0.931 19 C -0.185 4.185 20 N -0.553 5.553 21 Si 0.775 3.225 22 H -0.207 1.207 23 H -0.209 1.209 24 H -0.193 1.193 25 C -0.154 4.154 26 C -0.010 4.010 27 C -0.227 4.227 28 H 0.117 0.883 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.188 0.812 36 H 0.213 0.787 37 H 0.261 0.739 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.038 0.962 42 H 0.027 0.973 43 H 0.070 0.930 44 H 0.094 0.906 45 H 0.061 0.939 46 H 0.104 0.896 47 H 0.115 0.885 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.830 -2.689 21.756 25.920 hybrid contribution 0.716 -0.092 -1.196 1.397 sum -13.114 -2.781 20.560 24.544 Atomic orbital electron populations 1.22939 0.79344 1.03951 1.00858 1.87819 1.21591 1.28435 1.95618 1.22429 0.92550 0.84513 1.01010 1.20429 0.93686 0.92281 1.04820 1.20191 0.94850 0.95729 0.92552 1.22294 1.02545 0.96598 0.99212 1.23072 0.92901 0.92479 0.94841 1.67061 1.21156 1.38926 0.97831 1.18163 0.93834 0.90387 0.85331 1.42366 1.72217 1.11469 1.04908 1.15754 0.78299 0.84539 0.80376 1.90731 1.59388 1.14046 1.84211 1.47460 1.67852 1.12275 1.06892 1.21465 0.98375 0.96450 0.82113 1.21727 0.93155 1.00258 1.00085 1.18609 0.95214 0.91745 0.91757 1.21573 0.98699 1.36186 1.00586 0.93072 1.25683 0.99906 0.95068 0.97843 1.69957 1.33706 1.38746 1.12920 0.85701 0.80750 0.78477 0.77579 1.20745 1.20938 1.19276 1.21864 0.95237 1.01143 0.97170 1.21930 0.97218 0.79740 1.02114 1.22597 1.02448 0.96046 1.01587 0.88333 0.92590 0.93831 0.91221 0.93963 0.91146 0.87869 0.81189 0.78740 0.73902 0.90813 0.91221 0.90522 0.96223 0.97278 0.93021 0.90553 0.93928 0.89584 0.88501 0.83106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -8.09 10.70 -148.98 -1.59 -9.69 16 3 C 0.07 1.25 5.92 71.98 0.43 1.68 16 4 C -0.07 -1.40 5.76 29.85 0.17 -1.23 16 5 C -0.02 -0.53 5.17 -19.69 -0.10 -0.63 16 6 C -0.19 -2.97 9.81 22.37 0.22 -2.75 16 7 C 0.12 2.19 11.18 84.63 0.95 3.14 16 8 N -0.53 -13.32 10.39 -193.05 -2.01 -15.32 16 9 C 0.35 10.12 7.51 132.92 1.00 11.12 16 10 N -0.66 -18.92 5.28 -322.19 -1.70 -20.63 16 11 C 0.71 24.61 8.20 179.05 1.47 26.07 16 12 O -0.60 -24.27 12.45 -3.99 -0.05 -24.32 16 13 N -0.61 -20.98 2.98 -837.74 -2.49 -23.47 16 14 C 0.14 5.42 6.41 86.22 0.55 5.97 16 15 C -0.11 -5.30 5.14 30.53 0.16 -5.14 16 16 C 0.05 2.13 2.07 -11.52 -0.02 2.11 16 17 C -0.53 -28.38 8.56 25.60 0.22 -28.17 16 18 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 19 C 0.01 0.75 5.30 84.66 0.45 1.20 16 20 N -0.91 -51.35 11.30 21.45 0.24 -51.11 16 21 Si 0.95 43.12 29.54 68.60 2.03 45.15 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 25 C -0.12 -4.29 5.30 30.67 0.16 -4.13 16 26 C 0.11 3.27 6.35 86.36 0.55 3.82 16 27 C -0.20 -5.84 8.59 22.49 0.19 -5.65 16 28 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 1.58 8.10 -2.39 -0.02 1.56 16 34 H 0.10 1.53 8.10 -2.39 -0.02 1.51 16 35 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 36 H 0.20 1.87 8.06 -2.91 -0.02 1.85 16 37 H 0.42 9.91 6.42 -92.71 -0.59 9.32 16 38 H 0.07 2.96 6.99 -2.39 -0.02 2.95 16 39 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.08 4.04 6.03 -2.39 -0.01 4.03 16 41 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 44 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 45 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.10 2.17 5.74 -2.39 -0.01 2.16 16 48 H 0.15 5.13 5.19 -7.92 -0.04 5.09 16 Total: -1.00 -67.92 384.53 2.40 -65.51 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.35 Total: 24.90 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 7.63 Total: 8.97 kcal Atomic # 7 Polarization: -104.57 SS G_CDS: -5.96 Total: -110.53 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -1.64 Total: -34.00 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -67.92 2.40 -65.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548767682.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.019 kcal (2) G-P(sol) polarization free energy of solvation -67.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds